Wall clock time and date at job start Sat Apr 11 2020 06:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42899 * 113.99835 * 2 1 4 4 C 1.52998 * 109.47256 * 177.19544 * 3 2 1 5 5 N 1.46896 * 109.47374 * 64.00693 * 4 3 2 6 6 C 1.46900 * 111.00034 * 75.57220 * 5 4 3 7 7 C 1.53000 * 109.47267 * 190.00424 * 6 5 4 8 8 C 1.50699 * 109.47560 * 180.02562 * 7 6 5 9 9 O 1.21282 * 119.99660 * 359.97438 * 8 7 6 10 10 N 1.34775 * 120.00458 * 179.97438 * 8 7 6 11 11 C 1.46493 * 119.99707 * 0.02562 * 10 8 7 12 12 C 1.46497 * 119.99885 * 179.97438 * 10 8 7 13 13 C 1.50704 * 109.46916 * 90.00429 * 12 10 8 14 14 H 1.08004 * 119.99989 * 359.97438 * 13 12 10 15 15 C 1.37880 * 119.99883 * 179.97438 * 13 12 10 16 16 N 1.31517 * 119.99738 * 180.02562 * 15 13 12 17 17 Si 1.86797 * 120.00125 * 359.97438 * 15 13 12 18 18 H 1.48503 * 109.46867 * 90.00082 * 17 15 13 19 19 H 1.48496 * 109.47385 * 210.00077 * 17 15 13 20 20 H 1.48504 * 109.47154 * 330.00385 * 17 15 13 21 21 C 1.46897 * 111.00328 * 199.52785 * 5 4 3 22 22 C 1.50702 * 109.47418 * 76.03807 * 21 5 4 23 23 C 1.33632 * 126.03931 * 85.59217 * 22 21 5 24 24 N 1.31780 * 114.50104 * 179.97438 * 23 22 21 25 25 C 1.29027 * 117.12427 * 0.02562 * 24 23 22 26 26 S 1.70975 * 110.16656 * 359.71937 * 25 24 23 27 27 H 1.09002 * 109.46638 * 182.94280 * 1 2 3 28 28 H 1.08998 * 109.47469 * 302.94272 * 1 2 3 29 29 H 1.09001 * 109.47165 * 62.94512 * 1 2 3 30 30 H 1.09000 * 109.47462 * 57.19641 * 3 2 1 31 31 H 1.08999 * 109.47152 * 297.19483 * 3 2 1 32 32 H 1.09000 * 109.47380 * 304.00428 * 4 3 2 33 33 H 1.09003 * 109.47155 * 184.00421 * 4 3 2 34 34 H 1.09000 * 109.47122 * 309.99779 * 6 5 4 35 35 H 1.09001 * 109.47025 * 70.00332 * 6 5 4 36 36 H 1.09009 * 109.47025 * 299.99970 * 7 6 5 37 37 H 1.09001 * 109.47174 * 59.99998 * 7 6 5 38 38 H 1.09003 * 109.47373 * 89.99990 * 11 10 8 39 39 H 1.09003 * 109.46824 * 209.99872 * 11 10 8 40 40 H 1.08999 * 109.47633 * 329.99516 * 11 10 8 41 41 H 1.08997 * 109.46923 * 209.99884 * 12 10 8 42 42 H 1.08997 * 109.47469 * 330.00187 * 12 10 8 43 43 H 0.97001 * 119.99491 * 180.02562 * 16 15 13 44 44 H 1.09004 * 109.47363 * 196.03944 * 21 5 4 45 45 H 1.09000 * 109.47108 * 316.03369 * 21 5 4 46 46 H 1.07998 * 122.75019 * 0.02562 * 23 22 21 47 47 H 1.07997 * 124.91505 * 179.97438 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5338 1.1854 0.0706 5 7 4.0290 0.5173 -1.1403 6 6 4.0069 1.4296 -2.2914 7 6 4.2873 0.6414 -3.5724 8 6 4.2653 1.5773 -4.7533 9 8 4.0464 2.7586 -4.5867 10 7 4.4889 1.1019 -5.9944 11 6 4.7528 -0.3250 -6.1956 12 6 4.4669 2.0118 -7.1423 13 6 5.8514 2.5596 -7.3756 14 1 6.6660 2.2603 -6.7328 15 6 6.0780 3.4430 -8.4097 16 7 7.2863 3.9207 -8.6136 17 14 4.6692 3.9602 -9.5220 18 1 4.0149 5.1700 -8.9619 19 1 5.1944 4.2641 -10.8773 20 1 3.6782 2.8577 -9.6108 21 6 5.3760 -0.0286 -0.9269 22 6 5.2837 -1.2858 -0.1012 23 6 5.0587 -2.5178 -0.5673 24 7 5.0232 -3.4545 0.3590 25 6 5.2052 -3.0811 1.5805 26 16 5.4607 -1.3919 1.6487 27 1 -0.3633 -1.0264 0.0528 28 1 -0.3634 0.5588 0.8624 29 1 -0.3633 0.4674 -0.9152 30 1 1.6493 1.8639 0.8638 31 1 1.7289 1.8284 -0.9141 32 1 3.8120 0.6010 0.9476 33 1 3.9737 2.1802 0.1423 34 1 3.0269 1.9014 -2.3624 35 1 4.7708 2.1963 -2.1620 36 1 5.2674 0.1695 -3.5015 37 1 3.5235 -0.1254 -3.7018 38 1 3.8114 -0.8487 -6.3618 39 1 5.3996 -0.4560 -7.0631 40 1 5.2438 -0.7319 -5.3116 41 1 4.1363 1.4704 -8.0287 42 1 3.7800 2.8338 -6.9413 43 1 7.4456 4.5424 -9.3409 44 1 5.8314 -0.2591 -1.8901 45 1 5.9870 0.7063 -0.4028 46 1 4.9183 -2.7287 -1.6171 47 1 5.2013 -3.7407 2.4357 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000516847326.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:44 Heat of formation + Delta-G solvation = -43.404890 kcal Electronic energy + Delta-G solvation = -27741.551325 eV Core-core repulsion = 23858.200754 eV Total energy + Delta-G solvation = -3883.350570 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.89126 -40.46145 -39.32632 -37.94484 -36.61225 -34.71957 -33.08358 -32.52794 -30.60703 -29.50699 -27.56679 -27.31355 -26.79649 -25.37722 -24.51115 -23.50268 -21.92511 -20.72579 -19.90480 -19.15149 -18.99272 -18.08024 -17.45270 -17.32027 -17.06363 -16.72447 -16.39423 -16.27609 -15.95061 -15.76441 -15.30739 -14.93856 -14.88030 -14.75350 -14.55042 -14.37307 -14.01433 -13.74109 -13.62833 -13.61717 -13.29582 -13.23956 -12.92841 -12.77077 -12.54161 -12.49857 -12.30631 -12.22508 -12.03588 -11.91977 -11.75225 -11.65760 -10.83568 -10.65372 -10.54966 -10.51626 -10.16041 -9.77431 -9.38779 -9.34770 -8.34530 -6.39398 -0.15396 0.50774 0.87114 1.32700 1.36276 1.45038 1.82043 1.96398 2.29119 2.30936 2.88102 2.99524 3.00720 3.54374 3.75957 3.85770 3.93451 4.04636 4.10480 4.21593 4.28535 4.38523 4.45821 4.48728 4.51903 4.53627 4.58992 4.62902 4.68433 4.74782 4.83351 4.84165 4.87673 4.89084 4.92530 4.99203 5.01144 5.01776 5.30140 5.45789 5.62773 5.92893 5.96042 6.23639 6.36028 6.61879 6.71847 6.84645 7.21470 7.43444 8.82451 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014382 B = 0.002596 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1946.396612 B =10785.116936 C =11710.060520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.395 6.395 3 C 0.067 3.933 4 C 0.051 3.949 5 N -0.524 5.524 6 C 0.081 3.919 7 C -0.118 4.118 8 C 0.498 3.502 9 O -0.597 6.597 10 N -0.608 5.608 11 C 0.077 3.923 12 C 0.222 3.778 13 C -0.535 4.535 14 H 0.029 0.971 15 C 0.010 3.990 16 N -0.946 5.946 17 Si 0.948 3.052 18 H -0.276 1.276 19 H -0.275 1.275 20 H -0.238 1.238 21 C 0.123 3.877 22 C -0.207 4.207 23 C 0.038 3.962 24 N -0.502 5.502 25 C 0.015 3.985 26 S 0.135 5.865 27 H 0.089 0.911 28 H 0.050 0.950 29 H 0.038 0.962 30 H 0.068 0.932 31 H 0.043 0.957 32 H 0.085 0.915 33 H 0.062 0.938 34 H 0.074 0.926 35 H 0.029 0.971 36 H 0.109 0.891 37 H 0.120 0.880 38 H 0.078 0.922 39 H 0.064 0.936 40 H 0.091 0.909 41 H 0.049 0.951 42 H 0.018 0.982 43 H 0.268 0.732 44 H 0.104 0.896 45 H 0.056 0.944 46 H 0.180 0.820 47 H 0.224 0.776 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.915 -13.863 23.005 28.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.314 6.314 3 C -0.010 4.010 4 C -0.077 4.077 5 N -0.248 5.248 6 C -0.047 4.047 7 C -0.157 4.157 8 C 0.287 3.713 9 O -0.478 6.478 10 N -0.339 5.339 11 C -0.065 4.065 12 C 0.100 3.900 13 C -0.574 4.574 14 H 0.047 0.953 15 C -0.188 4.188 16 N -0.586 5.586 17 Si 0.771 3.229 18 H -0.202 1.202 19 H -0.200 1.200 20 H -0.161 1.161 21 C -0.006 4.006 22 C -0.329 4.329 23 C -0.113 4.113 24 N -0.215 5.215 25 C -0.282 4.282 26 S 0.387 5.613 27 H 0.108 0.892 28 H 0.069 0.931 29 H 0.057 0.943 30 H 0.086 0.914 31 H 0.061 0.939 32 H 0.104 0.896 33 H 0.080 0.920 34 H 0.092 0.908 35 H 0.047 0.953 36 H 0.127 0.873 37 H 0.138 0.862 38 H 0.096 0.904 39 H 0.083 0.917 40 H 0.109 0.891 41 H 0.067 0.933 42 H 0.036 0.964 43 H 0.077 0.923 44 H 0.122 0.878 45 H 0.074 0.926 46 H 0.196 0.804 47 H 0.240 0.760 Dipole moment (debyes) X Y Z Total from point charges -10.027 -13.636 23.576 29.023 hybrid contribution 0.181 1.365 -1.508 2.042 sum -9.845 -12.271 22.068 27.102 Atomic orbital electron populations 1.22833 0.80602 1.03212 1.00279 1.87957 1.20195 1.27867 1.95399 1.22575 0.93042 0.84955 1.00476 1.22284 0.94139 0.98357 0.92952 1.61893 1.22973 1.35888 1.04046 1.21680 1.01629 0.92673 0.88733 1.21590 1.05675 0.98111 0.90371 1.21324 0.75958 0.88933 0.85105 1.90630 1.51806 1.19652 1.85760 1.47971 1.68840 1.10276 1.06844 1.21970 1.02129 0.78734 1.03657 1.19328 0.95210 0.90046 0.85452 1.21569 0.94719 1.26965 1.14104 0.95266 1.25860 0.98517 0.95349 0.99063 1.70052 1.23098 1.32863 1.32617 0.85712 0.79479 0.79875 0.77871 1.20186 1.20038 1.16120 1.20537 0.89919 0.90925 0.99236 1.25819 1.10809 0.99834 0.96427 1.21850 1.01467 0.87135 1.00838 1.66353 1.16962 1.37385 1.00834 1.28846 1.02870 0.97748 0.98715 1.83838 1.65335 1.08034 1.04109 0.89204 0.93104 0.94318 0.91359 0.93867 0.89633 0.91971 0.90769 0.95254 0.87346 0.86193 0.90358 0.91713 0.89061 0.93320 0.96368 0.92278 0.87772 0.92628 0.80354 0.75969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 113.37 1.25 1.68 16 2 O -0.40 -8.59 10.64 -148.98 -1.58 -10.17 16 3 C 0.07 1.25 6.12 71.98 0.44 1.69 16 4 C 0.05 0.94 5.19 86.30 0.45 1.39 16 5 N -0.52 -10.91 4.29 -900.80 -3.86 -14.77 16 6 C 0.08 2.07 4.07 86.30 0.35 2.42 16 7 C -0.12 -3.06 4.22 29.85 0.13 -2.93 16 8 C 0.50 19.43 7.67 87.66 0.67 20.10 16 9 O -0.60 -29.15 15.56 -3.04 -0.05 -29.19 16 10 N -0.61 -24.22 2.86 -851.16 -2.43 -26.65 16 11 C 0.08 2.14 10.24 127.77 1.31 3.44 16 12 C 0.22 10.80 4.23 85.63 0.36 11.17 16 13 C -0.53 -31.49 9.94 25.60 0.25 -31.23 16 14 H 0.03 1.92 8.06 -2.91 -0.02 1.89 16 15 C 0.01 0.59 5.47 84.66 0.46 1.05 16 16 N -0.95 -59.94 13.96 21.45 0.30 -59.64 16 17 Si 0.95 44.50 27.47 68.60 1.88 46.39 16 18 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 19 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 20 H -0.24 -10.03 6.54 99.48 0.65 -9.38 16 21 C 0.12 2.29 5.37 85.56 0.46 2.75 16 22 C -0.21 -3.85 5.57 24.64 0.14 -3.71 16 23 C 0.04 0.78 11.25 83.66 0.94 1.72 16 24 N -0.50 -10.67 10.54 -203.76 -2.15 -12.82 16 25 C 0.02 0.24 12.23 130.65 1.60 1.84 16 26 S 0.13 2.00 22.05 -56.49 -1.25 0.75 16 27 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 28 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 31 H 0.04 0.89 6.67 -2.39 -0.02 0.88 16 32 H 0.09 1.51 6.24 -2.39 -0.01 1.50 16 33 H 0.06 1.08 8.00 -2.39 -0.02 1.06 16 34 H 0.07 2.07 6.52 -2.39 -0.02 2.06 16 35 H 0.03 0.85 8.08 -2.39 -0.02 0.83 16 36 H 0.11 2.40 5.51 -2.38 -0.01 2.39 16 37 H 0.12 2.62 8.11 -2.39 -0.02 2.60 16 38 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.06 1.94 8.07 -2.39 -0.02 1.92 16 40 H 0.09 1.96 6.44 -2.39 -0.02 1.94 16 41 H 0.05 2.18 7.13 -2.39 -0.02 2.16 16 42 H 0.02 0.95 6.85 -2.39 -0.02 0.94 16 43 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 44 H 0.10 1.85 5.87 -2.38 -0.01 1.83 16 45 H 0.06 0.98 7.99 -2.39 -0.02 0.96 16 46 H 0.18 3.26 8.06 -2.91 -0.02 3.23 16 47 H 0.22 1.85 8.06 -2.91 -0.02 1.82 16 Total: -1.00 -80.56 395.38 0.58 -79.97 By element: Atomic # 1 Polarization: 13.84 SS G_CDS: 0.91 Total: 14.75 kcal Atomic # 6 Polarization: 2.57 SS G_CDS: 8.81 Total: 11.38 kcal Atomic # 7 Polarization: -105.73 SS G_CDS: -8.14 Total: -113.88 kcal Atomic # 8 Polarization: -37.74 SS G_CDS: -1.63 Total: -39.37 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 1.88 Total: 46.39 kcal Atomic # 16 Polarization: 2.00 SS G_CDS: -1.25 Total: 0.75 kcal Total: -80.56 0.58 -79.97 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000516847326.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.568 kcal (2) G-P(sol) polarization free energy of solvation -80.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds