Wall clock time and date at job start Sat Apr 11 2020 06:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46906 * 110.99728 * 2 1 4 4 C 1.50699 * 109.47140 * 66.04805 * 3 2 1 5 5 H 1.08003 * 119.99962 * 359.97438 * 4 3 2 6 6 C 1.37873 * 119.99861 * 180.02562 * 4 3 2 7 7 N 1.31522 * 120.00244 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99980 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.46950 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47074 * 119.99839 * 8 6 4 11 11 H 1.48505 * 109.46997 * 239.99833 * 8 6 4 12 12 C 1.46905 * 110.99850 * 236.04849 * 2 1 3 13 13 C 1.53000 * 109.47114 * 293.94896 * 12 2 1 14 14 H 1.09000 * 109.46550 * 60.00064 * 13 12 2 15 15 O 1.42901 * 109.46928 * 300.00575 * 13 12 2 16 16 C 1.52996 * 109.47000 * 180.02562 * 13 12 2 17 17 N 1.46899 * 109.46798 * 185.00066 * 16 13 12 18 18 C 1.46901 * 111.00076 * 179.97438 * 17 16 13 19 19 C 1.52997 * 109.47380 * 180.02562 * 18 17 16 20 20 N 1.46503 * 109.47270 * 180.02562 * 19 18 17 21 21 C 1.34778 * 120.00030 * 179.97438 * 20 19 18 22 22 O 1.21699 * 120.00122 * 0.02562 * 21 20 19 23 23 C 1.46575 * 119.99652 * 179.97438 * 21 20 19 24 24 C 1.36654 * 125.45618 * 180.02562 * 23 21 20 25 25 C 1.37471 * 113.29886 * 179.97438 * 24 23 21 26 26 C 1.33823 * 115.09953 * 359.97438 * 25 24 23 27 27 S 1.70616 * 110.95593 * 359.76316 * 26 25 24 28 28 H 1.08996 * 109.47030 * 59.99921 * 1 2 3 29 29 H 1.08999 * 109.46702 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46890 * 299.99929 * 1 2 3 31 31 H 1.09004 * 109.47040 * 186.04743 * 3 2 1 32 32 H 1.09000 * 109.47033 * 306.04695 * 3 2 1 33 33 H 0.96992 * 120.00038 * 179.97438 * 7 6 4 34 34 H 1.08997 * 109.46807 * 53.95411 * 12 2 1 35 35 H 1.09000 * 109.46636 * 173.95277 * 12 2 1 36 36 H 0.96697 * 113.99735 * 299.99403 * 15 13 12 37 37 H 1.08995 * 109.47058 * 304.99907 * 16 13 12 38 38 H 1.08998 * 109.46953 * 65.00454 * 16 13 12 39 39 H 1.00903 * 111.00138 * 56.05087 * 17 16 13 40 40 H 1.09005 * 109.47140 * 300.00367 * 18 17 16 41 41 H 1.09001 * 109.46992 * 59.99753 * 18 17 16 42 42 H 1.09005 * 109.47126 * 300.00183 * 19 18 17 43 43 H 1.09001 * 109.47417 * 59.99821 * 19 18 17 44 44 H 0.97001 * 119.99732 * 359.97438 * 20 19 18 45 45 H 1.08001 * 123.35040 * 359.93815 * 24 23 21 46 46 H 1.07997 * 122.45439 * 180.02562 * 25 24 23 47 47 H 1.07998 * 124.52271 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 1.2984 5 1 1.0739 1.5115 2.0485 6 6 2.0267 3.3495 1.5284 7 7 2.7118 4.0020 0.6149 8 14 1.5829 4.1868 3.1382 9 1 0.8157 3.2441 3.9915 10 1 2.8249 4.5945 3.8430 11 1 0.7549 5.3877 2.8597 12 6 1.9954 -0.7660 -1.1377 13 6 1.6315 -2.2426 -0.9704 14 1 0.5472 -2.3474 -0.9323 15 8 2.2010 -2.7391 0.2426 16 6 2.1803 -3.0404 -2.1549 17 7 1.7299 -4.4352 -2.0566 18 6 2.2384 -5.2331 -3.1803 19 6 1.7491 -6.6763 -3.0438 20 7 2.2567 -7.4722 -4.1641 21 6 1.9516 -8.7819 -4.2531 22 8 1.2541 -9.3034 -3.4030 23 6 2.4591 -9.5780 -5.3743 24 6 2.2198 -10.9085 -5.5743 25 6 2.8182 -11.4042 -6.7083 26 6 3.5232 -10.5123 -7.4143 27 16 3.4665 -8.9723 -6.6821 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 3.0797 1.3445 -0.1083 32 1 1.5610 1.9274 -0.8309 33 1 2.9857 4.9183 0.7765 34 1 1.5611 -0.3871 -2.0628 35 1 3.0797 -0.6610 -1.1757 36 1 3.1653 -2.6770 0.2786 37 1 1.8160 -2.6058 -3.0857 38 1 3.2698 -3.0086 -2.1409 39 1 0.7237 -4.4873 -2.0027 40 1 1.8742 -4.8135 -4.1181 41 1 3.3283 -5.2165 -3.1739 42 1 2.1129 -7.0962 -2.1059 43 1 0.6592 -6.6926 -3.0504 44 1 2.8124 -7.0564 -4.8418 45 1 1.6206 -11.5108 -4.9075 46 1 2.7256 -12.4376 -7.0081 47 1 4.0541 -10.7365 -8.3276 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000573236835.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:49 Heat of formation + Delta-G solvation = -44.445200 kcal Electronic energy + Delta-G solvation = -25691.150868 eV Core-core repulsion = 21807.755187 eV Total energy + Delta-G solvation = -3883.395682 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.18208 -38.41135 -38.00323 -36.60468 -35.43024 -34.39305 -32.51045 -31.09438 -30.04457 -28.33482 -27.03317 -25.89883 -25.07940 -23.50860 -22.60559 -21.78473 -21.26543 -20.16278 -19.82505 -19.04566 -16.87903 -16.65063 -16.46540 -16.25203 -15.96985 -15.75032 -15.38078 -15.16304 -14.83945 -14.54182 -14.29518 -14.08953 -13.94114 -13.49759 -13.36723 -13.31312 -13.17181 -12.82099 -12.80061 -12.26539 -11.95637 -11.85634 -11.74023 -11.55538 -11.33043 -11.12821 -10.89814 -10.74975 -10.64845 -10.55025 -10.29813 -9.97007 -9.65595 -9.57177 -9.36456 -9.15851 -9.09816 -8.67209 -8.43509 -7.19717 -6.02597 -4.03382 -0.03348 0.90528 1.30736 1.87601 2.55975 2.76340 3.31999 3.39374 3.45294 3.89135 4.26395 4.43394 4.43493 4.54512 4.63359 4.75662 4.80384 4.84304 4.93512 5.06203 5.14694 5.27887 5.34177 5.39567 5.48795 5.52485 5.56426 5.60115 5.65294 5.66266 5.77066 5.88555 6.03799 6.18108 6.29107 6.39571 6.66547 6.76734 6.93986 7.07124 7.26604 7.32182 7.68536 7.81195 8.04737 8.14795 8.21064 8.55722 9.05188 9.61094 11.08472 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.038565 B = 0.001333 C = 0.001305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.875314 B =20993.654980 C =21447.169705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.528 5.528 3 C 0.192 3.808 4 C -0.504 4.504 5 H 0.065 0.935 6 C 0.054 3.946 7 N -0.901 5.901 8 Si 0.898 3.102 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.285 1.285 12 C 0.024 3.976 13 C 0.117 3.883 14 H 0.092 0.908 15 O -0.535 6.535 16 C 0.028 3.972 17 N -0.674 5.674 18 C 0.048 3.952 19 C 0.121 3.879 20 N -0.726 5.726 21 C 0.591 3.409 22 O -0.525 6.525 23 C -0.268 4.268 24 C -0.054 4.054 25 C -0.150 4.150 26 C -0.228 4.228 27 S 0.199 5.801 28 H 0.008 0.992 29 H 0.046 0.954 30 H 0.073 0.927 31 H 0.028 0.972 32 H -0.011 1.011 33 H 0.260 0.740 34 H 0.026 0.974 35 H 0.070 0.930 36 H 0.369 0.631 37 H 0.037 0.963 38 H 0.077 0.923 39 H 0.344 0.656 40 H 0.034 0.966 41 H 0.079 0.921 42 H 0.084 0.916 43 H 0.071 0.929 44 H 0.397 0.603 45 H 0.155 0.845 46 H 0.147 0.853 47 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.214 -28.508 -19.839 34.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.252 5.252 3 C 0.067 3.933 4 C -0.543 4.543 5 H 0.083 0.917 6 C -0.147 4.147 7 N -0.541 5.541 8 Si 0.726 3.274 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.212 1.212 12 C -0.106 4.106 13 C 0.056 3.944 14 H 0.110 0.890 15 O -0.338 6.338 16 C -0.102 4.102 17 N -0.306 5.306 18 C -0.082 4.082 19 C -0.002 4.002 20 N -0.378 5.378 21 C 0.377 3.623 22 O -0.402 6.402 23 C -0.388 4.388 24 C -0.087 4.087 25 C -0.181 4.181 26 C -0.365 4.365 27 S 0.466 5.534 28 H 0.027 0.973 29 H 0.065 0.935 30 H 0.092 0.908 31 H 0.046 0.954 32 H 0.007 0.993 33 H 0.070 0.930 34 H 0.044 0.956 35 H 0.089 0.911 36 H 0.215 0.785 37 H 0.056 0.944 38 H 0.096 0.904 39 H 0.163 0.837 40 H 0.053 0.947 41 H 0.097 0.903 42 H 0.102 0.898 43 H 0.089 0.911 44 H 0.232 0.768 45 H 0.173 0.827 46 H 0.165 0.835 47 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 2.452 -27.785 -18.606 33.530 hybrid contribution -0.633 0.220 -1.160 1.340 sum 1.819 -27.565 -19.766 33.968 Atomic orbital electron populations 1.22237 0.89006 0.99176 1.00680 1.62019 1.06823 1.17385 1.39012 1.19760 0.95275 0.81612 0.96645 1.21217 1.34557 0.96830 1.01683 0.91704 1.24994 0.95319 0.97358 0.97025 1.69970 1.38649 1.11377 1.34102 0.86436 0.78160 0.79261 0.83552 1.19575 1.21009 1.21177 1.22716 1.00564 0.93878 0.93422 1.21863 0.98202 0.90782 0.83544 0.88995 1.86597 1.24939 1.84894 1.37403 1.22755 1.01306 0.87674 0.98430 1.60235 1.16788 1.10637 1.42935 1.22093 1.01136 0.92225 0.92787 1.21328 0.99436 0.89989 0.89491 1.45758 1.54189 1.09366 1.28465 1.16904 0.80029 0.81279 0.84084 1.90864 1.37727 1.71131 1.40504 1.24647 1.11832 0.99281 1.03063 1.20855 0.97973 0.92977 0.96939 1.20094 1.00443 1.01730 0.95833 1.25359 1.06768 0.98201 1.06208 1.83026 1.45530 1.09659 1.15198 0.97341 0.93506 0.90798 0.95362 0.99344 0.93034 0.95576 0.91146 0.78479 0.94447 0.90421 0.83732 0.94738 0.90267 0.89820 0.91089 0.76849 0.82743 0.83527 0.81238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.74 9.16 60.06 0.55 1.29 16 2 N -0.53 -11.34 4.62 -244.36 -1.13 -12.47 16 3 C 0.19 5.01 4.72 -4.97 -0.02 4.99 16 4 C -0.50 -14.30 8.52 -34.44 -0.29 -14.59 16 5 H 0.06 1.84 7.10 -52.48 -0.37 1.47 16 6 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 7 N -0.90 -26.82 13.29 55.43 0.74 -26.08 16 8 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 9 H -0.27 -6.49 7.11 56.52 0.40 -6.08 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 12 C 0.02 0.40 4.62 -3.82 -0.02 0.39 16 13 C 0.12 1.60 3.02 -26.73 -0.08 1.52 16 14 H 0.09 1.30 6.47 -51.93 -0.34 0.96 16 15 O -0.53 -8.35 13.15 -35.23 -0.46 -8.81 16 16 C 0.03 0.29 5.32 -3.83 -0.02 0.27 16 17 N -0.67 -6.48 6.45 -113.78 -0.73 -7.21 16 18 C 0.05 0.35 5.80 -3.82 -0.02 0.33 16 19 C 0.12 1.00 5.93 -4.04 -0.02 0.98 16 20 N -0.73 -5.56 5.55 -61.65 -0.34 -5.90 16 21 C 0.59 5.93 7.78 -12.90 -0.10 5.83 16 22 O -0.52 -7.23 16.84 5.19 0.09 -7.15 16 23 C -0.27 -2.11 6.45 -36.79 -0.24 -2.35 16 24 C -0.05 -0.39 10.01 -40.43 -0.40 -0.79 16 25 C -0.15 -0.78 10.15 -41.41 -0.42 -1.20 16 26 C -0.23 -1.02 10.92 29.18 0.32 -0.70 16 27 S 0.20 0.98 22.16 -107.50 -2.38 -1.40 16 28 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 29 H 0.05 0.80 6.30 -51.93 -0.33 0.47 16 30 H 0.07 1.57 6.86 -51.93 -0.36 1.22 16 31 H 0.03 0.78 7.93 -51.93 -0.41 0.37 16 32 H -0.01 -0.31 8.12 -51.93 -0.42 -0.73 16 33 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 34 H 0.03 0.43 8.12 -51.93 -0.42 0.01 16 35 H 0.07 1.16 7.93 -51.93 -0.41 0.75 16 36 H 0.37 4.81 9.04 45.56 0.41 5.23 16 37 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 38 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.34 3.17 8.73 -39.29 -0.34 2.83 16 40 H 0.03 0.23 8.14 -51.93 -0.42 -0.19 16 41 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 42 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 43 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.40 2.09 7.59 -40.82 -0.31 1.78 16 45 H 0.15 1.08 8.06 -52.49 -0.42 0.66 16 46 H 0.15 0.46 8.06 -52.49 -0.42 0.04 16 47 H 0.17 0.36 8.06 -52.49 -0.42 -0.06 16 LS Contribution 404.46 15.07 6.10 6.10 Total: -1.00 -34.48 404.46 -10.69 -45.17 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -6.66 Total: 3.58 kcal Atomic # 6 Polarization: -1.72 SS G_CDS: -0.87 Total: -2.59 kcal Atomic # 7 Polarization: -50.20 SS G_CDS: -1.47 Total: -51.67 kcal Atomic # 8 Polarization: -15.58 SS G_CDS: -0.38 Total: -15.95 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Atomic # 16 Polarization: 0.98 SS G_CDS: -2.38 Total: -1.40 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.48 -10.69 -45.17 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573236835.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.727 kcal (2) G-P(sol) polarization free energy of solvation -34.484 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.757 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.445 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds