Wall clock time and date at job start Sat Apr 11 2020 06:21:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46906 * 110.99728 * 2 1 4 4 C 1.50699 * 109.47140 * 66.04805 * 3 2 1 5 5 H 1.08003 * 119.99962 * 359.97438 * 4 3 2 6 6 C 1.37873 * 119.99861 * 180.02562 * 4 3 2 7 7 N 1.31522 * 120.00244 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99980 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.46950 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47074 * 119.99839 * 8 6 4 11 11 H 1.48505 * 109.46997 * 239.99833 * 8 6 4 12 12 C 1.46905 * 110.99850 * 236.04849 * 2 1 3 13 13 C 1.53000 * 109.47114 * 293.94896 * 12 2 1 14 14 H 1.09000 * 109.46550 * 60.00064 * 13 12 2 15 15 O 1.42901 * 109.46928 * 300.00575 * 13 12 2 16 16 C 1.52996 * 109.47000 * 180.02562 * 13 12 2 17 17 N 1.46899 * 109.46798 * 185.00066 * 16 13 12 18 18 C 1.46901 * 111.00076 * 179.97438 * 17 16 13 19 19 C 1.52997 * 109.47380 * 180.02562 * 18 17 16 20 20 N 1.46503 * 109.47270 * 180.02562 * 19 18 17 21 21 C 1.34778 * 120.00030 * 179.97438 * 20 19 18 22 22 O 1.21699 * 120.00122 * 0.02562 * 21 20 19 23 23 C 1.46575 * 119.99652 * 179.97438 * 21 20 19 24 24 C 1.36654 * 125.45618 * 180.02562 * 23 21 20 25 25 C 1.37471 * 113.29886 * 179.97438 * 24 23 21 26 26 C 1.33823 * 115.09953 * 359.97438 * 25 24 23 27 27 S 1.70616 * 110.95593 * 359.76316 * 26 25 24 28 28 H 1.08996 * 109.47030 * 59.99921 * 1 2 3 29 29 H 1.08999 * 109.46702 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.46890 * 299.99929 * 1 2 3 31 31 H 1.09004 * 109.47040 * 186.04743 * 3 2 1 32 32 H 1.09000 * 109.47033 * 306.04695 * 3 2 1 33 33 H 0.96992 * 120.00038 * 179.97438 * 7 6 4 34 34 H 1.08997 * 109.46807 * 53.95411 * 12 2 1 35 35 H 1.09000 * 109.46636 * 173.95277 * 12 2 1 36 36 H 0.96697 * 113.99735 * 299.99403 * 15 13 12 37 37 H 1.08995 * 109.47058 * 304.99907 * 16 13 12 38 38 H 1.08998 * 109.46953 * 65.00454 * 16 13 12 39 39 H 1.00903 * 111.00138 * 56.05087 * 17 16 13 40 40 H 1.09005 * 109.47140 * 300.00367 * 18 17 16 41 41 H 1.09001 * 109.46992 * 59.99753 * 18 17 16 42 42 H 1.09005 * 109.47126 * 300.00183 * 19 18 17 43 43 H 1.09001 * 109.47417 * 59.99821 * 19 18 17 44 44 H 0.97001 * 119.99732 * 359.97438 * 20 19 18 45 45 H 1.08001 * 123.35040 * 359.93815 * 24 23 21 46 46 H 1.07997 * 122.45439 * 180.02562 * 25 24 23 47 47 H 1.07998 * 124.52271 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 1.2984 5 1 1.0739 1.5115 2.0485 6 6 2.0267 3.3495 1.5284 7 7 2.7118 4.0020 0.6149 8 14 1.5829 4.1868 3.1382 9 1 0.8157 3.2441 3.9915 10 1 2.8249 4.5945 3.8430 11 1 0.7549 5.3877 2.8597 12 6 1.9954 -0.7660 -1.1377 13 6 1.6315 -2.2426 -0.9704 14 1 0.5472 -2.3474 -0.9323 15 8 2.2010 -2.7391 0.2426 16 6 2.1803 -3.0404 -2.1549 17 7 1.7299 -4.4352 -2.0566 18 6 2.2384 -5.2331 -3.1803 19 6 1.7491 -6.6763 -3.0438 20 7 2.2567 -7.4722 -4.1641 21 6 1.9516 -8.7819 -4.2531 22 8 1.2541 -9.3034 -3.4030 23 6 2.4591 -9.5780 -5.3743 24 6 2.2198 -10.9085 -5.5743 25 6 2.8182 -11.4042 -6.7083 26 6 3.5232 -10.5123 -7.4143 27 16 3.4665 -8.9723 -6.6821 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 3.0797 1.3445 -0.1083 32 1 1.5610 1.9274 -0.8309 33 1 2.9857 4.9183 0.7765 34 1 1.5611 -0.3871 -2.0628 35 1 3.0797 -0.6610 -1.1757 36 1 3.1653 -2.6770 0.2786 37 1 1.8160 -2.6058 -3.0857 38 1 3.2698 -3.0086 -2.1409 39 1 0.7237 -4.4873 -2.0027 40 1 1.8742 -4.8135 -4.1181 41 1 3.3283 -5.2165 -3.1739 42 1 2.1129 -7.0962 -2.1059 43 1 0.6592 -6.6926 -3.0504 44 1 2.8124 -7.0564 -4.8418 45 1 1.6206 -11.5108 -4.9075 46 1 2.7256 -12.4376 -7.0081 47 1 4.0541 -10.7365 -8.3276 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000573236835.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:49 Heat of formation + Delta-G solvation = -73.657653 kcal Electronic energy + Delta-G solvation = -25692.417615 eV Core-core repulsion = 21807.755187 eV Total energy + Delta-G solvation = -3884.662429 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.90534 -39.57795 -38.52384 -37.67768 -36.72523 -35.25715 -34.60317 -31.91394 -30.90548 -29.54226 -28.70020 -27.14693 -25.90110 -24.86343 -23.29275 -22.76718 -22.31608 -21.71884 -20.33530 -19.60338 -18.56371 -17.68498 -17.37108 -16.95830 -16.88893 -16.82972 -16.62899 -16.06324 -15.96972 -15.90293 -15.59056 -15.19126 -14.85630 -14.65039 -14.50936 -14.09138 -13.86250 -13.80291 -13.70615 -13.32402 -13.21947 -13.18361 -12.85037 -12.61709 -12.60095 -12.52171 -12.40775 -12.36157 -11.99349 -11.97889 -11.59257 -11.37324 -11.34286 -10.63946 -10.62041 -10.37502 -9.85473 -9.53632 -9.39664 -8.94002 -8.20814 -6.30345 -0.52617 0.47036 0.90308 1.38510 1.40801 1.41819 1.55645 1.90088 2.10721 2.40662 3.00248 3.11991 3.47036 3.69022 3.76211 3.91018 3.96056 4.06001 4.13908 4.20288 4.33296 4.34485 4.42889 4.48496 4.53159 4.55504 4.68752 4.73488 4.79153 4.85621 4.89905 5.01888 5.07598 5.16135 5.18210 5.20830 5.21983 5.32680 5.34158 5.65558 5.93142 6.06181 6.31289 6.32699 6.35620 6.65686 6.86274 6.99984 7.07472 7.39633 8.90301 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.038565 B = 0.001333 C = 0.001305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.875314 B =20993.654980 C =21447.169705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.540 5.540 3 C 0.207 3.793 4 C -0.523 4.523 5 H 0.060 0.940 6 C 0.002 3.998 7 N -0.935 5.935 8 Si 0.968 3.032 9 H -0.265 1.265 10 H -0.277 1.277 11 H -0.278 1.278 12 C 0.024 3.976 13 C 0.127 3.873 14 H 0.091 0.909 15 O -0.555 6.555 16 C 0.041 3.959 17 N -0.686 5.686 18 C 0.057 3.943 19 C 0.127 3.873 20 N -0.713 5.713 21 C 0.587 3.413 22 O -0.575 6.575 23 C -0.305 4.305 24 C -0.061 4.061 25 C -0.161 4.161 26 C -0.219 4.219 27 S 0.241 5.759 28 H 0.010 0.990 29 H 0.076 0.924 30 H 0.052 0.948 31 H 0.005 0.995 32 H -0.039 1.039 33 H 0.264 0.736 34 H 0.033 0.967 35 H 0.069 0.931 36 H 0.378 0.622 37 H 0.050 0.950 38 H 0.085 0.915 39 H 0.346 0.654 40 H 0.051 0.949 41 H 0.087 0.913 42 H 0.064 0.936 43 H 0.063 0.937 44 H 0.411 0.589 45 H 0.145 0.855 46 H 0.167 0.833 47 H 0.199 0.801 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.767 -29.242 -21.246 36.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.264 5.264 3 C 0.081 3.919 4 C -0.561 4.561 5 H 0.078 0.922 6 C -0.195 4.195 7 N -0.575 5.575 8 Si 0.793 3.207 9 H -0.190 1.190 10 H -0.203 1.203 11 H -0.203 1.203 12 C -0.106 4.106 13 C 0.067 3.933 14 H 0.108 0.892 15 O -0.360 6.360 16 C -0.089 4.089 17 N -0.318 5.318 18 C -0.072 4.072 19 C 0.003 3.997 20 N -0.365 5.365 21 C 0.375 3.625 22 O -0.457 6.457 23 C -0.425 4.425 24 C -0.096 4.096 25 C -0.191 4.191 26 C -0.357 4.357 27 S 0.508 5.492 28 H 0.029 0.971 29 H 0.095 0.905 30 H 0.071 0.929 31 H 0.023 0.977 32 H -0.021 1.021 33 H 0.073 0.927 34 H 0.051 0.949 35 H 0.088 0.912 36 H 0.226 0.774 37 H 0.069 0.931 38 H 0.103 0.897 39 H 0.165 0.835 40 H 0.070 0.930 41 H 0.105 0.895 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.247 0.753 45 H 0.163 0.837 46 H 0.184 0.816 47 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 3.028 -28.514 -20.048 34.988 hybrid contribution -0.760 0.392 -0.822 1.186 sum 2.268 -28.122 -20.871 35.094 Atomic orbital electron populations 1.22205 0.87944 1.00795 0.99722 1.61919 1.07895 1.14835 1.41742 1.19409 0.93717 0.83950 0.94845 1.21512 1.34694 0.97485 1.02449 0.92204 1.25882 0.95013 0.98016 1.00624 1.70081 1.39484 1.11863 1.36105 0.85350 0.78104 0.78161 0.79099 1.18956 1.20310 1.20348 1.22835 1.00418 0.95310 0.91995 1.21764 0.98179 0.88913 0.84470 0.89168 1.86562 1.25998 1.84902 1.38576 1.22528 1.01563 0.87678 0.97095 1.60176 1.17125 1.10270 1.44260 1.22024 1.01484 0.90982 0.92732 1.21195 0.98989 0.90608 0.88944 1.45634 1.53717 1.08742 1.28422 1.17282 0.79335 0.81798 0.84116 1.90825 1.40144 1.72150 1.42534 1.24581 1.14105 0.99684 1.04116 1.21024 0.97994 0.92965 0.97625 1.20251 1.00629 1.02998 0.95270 1.25805 1.05573 0.97706 1.06602 1.82819 1.43721 1.09459 1.13153 0.97143 0.90500 0.92903 0.97655 1.02092 0.92688 0.94877 0.91211 0.77379 0.93145 0.89680 0.83510 0.93040 0.89452 0.91743 0.91816 0.75262 0.83712 0.81574 0.78376 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.63 9.16 127.69 1.17 2.80 16 2 N -0.54 -23.25 4.62 -927.03 -4.28 -27.53 16 3 C 0.21 11.08 4.72 85.56 0.40 11.48 16 4 C -0.52 -30.13 8.52 25.60 0.22 -29.91 16 5 H 0.06 3.44 7.10 -2.91 -0.02 3.41 16 6 C 0.00 0.14 5.46 84.65 0.46 0.61 16 7 N -0.93 -56.31 13.29 21.45 0.28 -56.02 16 8 Si 0.97 44.78 29.54 68.60 2.03 46.81 16 9 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 10 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 11 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 12 C 0.02 0.78 4.62 86.30 0.40 1.17 16 13 C 0.13 3.29 3.02 30.59 0.09 3.38 16 14 H 0.09 2.38 6.47 -2.39 -0.02 2.36 16 15 O -0.56 -16.69 13.15 -148.98 -1.96 -18.64 16 16 C 0.04 0.76 5.32 86.30 0.46 1.22 16 17 N -0.69 -11.93 6.45 -513.90 -3.32 -15.24 16 18 C 0.06 0.74 5.80 86.30 0.50 1.24 16 19 C 0.13 2.05 5.93 86.38 0.51 2.56 16 20 N -0.71 -10.55 5.55 -467.17 -2.59 -13.14 16 21 C 0.59 12.09 7.78 86.42 0.67 12.76 16 22 O -0.58 -16.84 16.84 -4.35 -0.07 -16.91 16 23 C -0.30 -4.72 6.45 24.08 0.16 -4.57 16 24 C -0.06 -0.89 10.01 21.72 0.22 -0.67 16 25 C -0.16 -1.42 10.15 21.08 0.21 -1.20 16 26 C -0.22 -1.35 10.92 66.82 0.73 -0.62 16 27 S 0.24 1.86 22.16 -56.49 -1.25 0.61 16 28 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 29 H 0.08 2.52 6.30 -2.39 -0.02 2.50 16 30 H 0.05 2.26 6.86 -2.39 -0.02 2.24 16 31 H 0.01 0.31 7.93 -2.38 -0.02 0.29 16 32 H -0.04 -2.23 8.12 -2.39 -0.02 -2.25 16 33 H 0.26 14.91 8.31 -92.71 -0.77 14.14 16 34 H 0.03 1.05 8.12 -2.39 -0.02 1.03 16 35 H 0.07 2.28 7.93 -2.39 -0.02 2.26 16 36 H 0.38 9.51 9.04 -74.06 -0.67 8.84 16 37 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.35 5.83 8.73 -89.69 -0.78 5.04 16 40 H 0.05 0.53 8.14 -2.38 -0.02 0.51 16 41 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 43 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.41 3.69 7.59 -92.71 -0.70 2.99 16 45 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16 46 H 0.17 0.71 8.06 -2.91 -0.02 0.68 16 47 H 0.20 0.04 8.06 -2.91 -0.02 0.02 16 Total: -1.00 -76.12 404.46 -6.11 -82.23 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: -1.16 Total: 17.59 kcal Atomic # 6 Polarization: -5.95 SS G_CDS: 6.21 Total: 0.25 kcal Atomic # 7 Polarization: -102.03 SS G_CDS: -9.91 Total: -111.94 kcal Atomic # 8 Polarization: -33.52 SS G_CDS: -2.03 Total: -35.56 kcal Atomic # 14 Polarization: 44.78 SS G_CDS: 2.03 Total: 46.81 kcal Atomic # 16 Polarization: 1.86 SS G_CDS: -1.25 Total: 0.61 kcal Total: -76.12 -6.11 -82.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573236835.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.573 kcal (2) G-P(sol) polarization free energy of solvation -76.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.114 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds