Wall clock time and date at job start Sat Apr 11 2020 06:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35549 * 117.00089 * 2 1 4 4 N 1.29505 * 124.94111 * 359.97438 * 3 2 1 5 5 C 1.32077 * 116.92307 * 180.02562 * 4 3 2 6 6 C 1.33369 * 114.56051 * 359.97438 * 5 4 3 7 7 C 1.50699 * 125.97342 * 179.97438 * 6 5 4 8 8 N 1.46903 * 109.46745 * 90.00198 * 7 6 5 9 9 C 1.46899 * 111.00102 * 66.05143 * 8 7 6 10 10 C 1.50698 * 109.47154 * 199.24468 * 9 8 7 11 11 H 1.08004 * 120.00194 * 355.23233 * 10 9 8 12 12 C 1.37875 * 120.00364 * 175.23181 * 10 9 8 13 13 N 1.31513 * 120.00399 * 179.97438 * 12 10 9 14 14 Si 1.86799 * 119.99675 * 0.02562 * 12 10 9 15 15 H 1.48500 * 109.47204 * 89.99835 * 14 12 10 16 16 H 1.48506 * 109.47202 * 209.99823 * 14 12 10 17 17 H 1.48500 * 109.47167 * 329.99563 * 14 12 10 18 18 C 1.46907 * 110.99742 * 190.00251 * 8 7 6 19 19 C 1.53000 * 109.47240 * 75.85590 * 18 8 7 20 20 N 1.46895 * 109.47129 * 175.37748 * 19 18 8 21 21 C 1.47019 * 110.99895 * 293.63171 * 20 19 18 22 22 C 1.53097 * 109.25695 * 177.60434 * 21 20 19 23 23 O 1.43016 * 109.25632 * 56.85335 * 22 21 20 24 24 C 1.43023 * 113.73838 * 301.32791 * 23 22 21 25 25 C 1.47015 * 111.00116 * 169.99913 * 20 19 18 26 26 S 1.70975 * 124.93918 * 180.30685 * 3 2 1 27 27 H 1.09005 * 109.46807 * 60.00060 * 1 2 3 28 28 H 1.08996 * 109.47221 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46949 * 300.00193 * 1 2 3 30 30 H 1.08004 * 122.71895 * 180.02562 * 5 4 3 31 31 H 1.08996 * 109.47157 * 330.00436 * 7 6 5 32 32 H 1.09001 * 109.47656 * 210.00328 * 7 6 5 33 33 H 1.09004 * 109.46764 * 319.24025 * 9 8 7 34 34 H 1.08998 * 109.47610 * 79.23844 * 9 8 7 35 35 H 0.96998 * 120.00474 * 180.02562 * 13 12 10 36 36 H 1.09004 * 109.46757 * 315.85069 * 18 8 7 37 37 H 1.08999 * 109.46667 * 195.85730 * 18 8 7 38 38 H 1.08995 * 109.47153 * 55.37157 * 19 18 8 39 39 H 1.09001 * 109.46667 * 295.37520 * 19 18 8 40 40 H 1.08993 * 109.50637 * 297.54710 * 21 20 19 41 41 H 1.09002 * 109.50539 * 57.67533 * 21 20 19 42 42 H 1.08996 * 109.51235 * 296.91531 * 22 21 20 43 43 H 1.08999 * 109.54305 * 176.80552 * 22 21 20 44 44 H 1.09001 * 109.50581 * 298.73488 * 24 23 22 45 45 H 1.09001 * 109.54242 * 178.62747 * 24 23 22 46 46 H 1.08997 * 109.50317 * 302.32395 * 25 20 19 47 47 H 1.09000 * 109.50613 * 62.40902 * 25 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0444 1.2077 0.0000 4 7 1.4353 2.3506 -0.0005 5 6 2.1932 3.4322 -0.0009 6 6 3.5047 3.1902 -0.0003 7 6 4.5966 4.2288 -0.0011 8 7 4.9510 4.5677 1.3837 9 6 5.5615 3.4195 2.0670 10 6 5.4794 3.6207 3.5582 11 1 5.0901 4.5455 3.9578 12 6 5.9013 2.6242 4.4126 13 7 5.8302 2.7999 5.7139 14 14 6.5753 1.0249 3.7215 15 1 8.0438 1.1456 3.5364 16 1 6.2849 -0.0838 4.6658 17 1 5.9331 0.7415 2.4129 18 6 5.8366 5.7390 1.4288 19 6 5.0192 7.0067 1.1725 20 7 5.8821 8.1853 1.3268 21 6 6.3224 8.3370 2.7213 22 6 7.2649 9.5390 2.8253 23 8 6.5965 10.7060 2.3385 24 6 6.1546 10.5931 0.9830 25 6 5.2010 9.4018 0.8603 26 16 3.7378 1.4439 -0.0075 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 1.7840 4.4318 -0.0009 31 1 4.2466 5.1235 -0.5159 32 1 5.4735 3.8339 -0.5143 33 1 5.0288 2.5087 1.7934 34 1 6.6063 3.3328 1.7690 35 1 6.1273 2.0990 6.3150 36 1 6.6065 5.6420 0.6633 37 1 6.3062 5.8017 2.4104 38 1 4.1987 7.0608 1.8880 39 1 4.6169 6.9809 0.1597 40 1 5.4550 8.4981 3.3613 41 1 6.8465 7.4352 3.0376 42 1 8.1573 9.3547 2.2273 43 1 7.5494 9.6903 3.8665 44 1 7.0148 10.4394 0.3314 45 1 5.6357 11.5063 0.6914 46 1 4.9065 9.2771 -0.1817 47 1 4.3151 9.5794 1.4701 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589820514.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:03 Heat of formation + Delta-G solvation = -7.303322 kcal Electronic energy + Delta-G solvation = -27926.347996 eV Core-core repulsion = 24044.562907 eV Total energy + Delta-G solvation = -3881.785089 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.95569 -39.52496 -38.08070 -37.11434 -35.42345 -32.60033 -31.29645 -30.86856 -29.58889 -28.08835 -27.38216 -26.05271 -24.57935 -23.99606 -23.27439 -21.80375 -20.58585 -20.21568 -19.66574 -18.46794 -16.97653 -16.68078 -16.49328 -16.18630 -16.12111 -15.29668 -15.07382 -15.03381 -14.94816 -14.73020 -14.48873 -14.14024 -13.91246 -13.54570 -13.24983 -13.01203 -12.83833 -12.46906 -12.21607 -12.17714 -12.02148 -11.85405 -11.53528 -11.38780 -11.24615 -11.15303 -10.98171 -10.78427 -10.62255 -10.44460 -10.03345 -9.86953 -9.63299 -9.59994 -9.42004 -8.90058 -8.57842 -8.29749 -8.14743 -7.53528 -6.08062 -4.05033 0.99422 1.12566 1.97044 3.06618 3.25896 3.34564 3.36238 3.53686 3.73713 3.90637 4.39714 4.54967 4.76119 4.90117 5.03307 5.05557 5.13966 5.15870 5.22401 5.23931 5.25031 5.30392 5.39224 5.46204 5.51524 5.55772 5.60865 5.70920 5.74054 5.78302 5.93567 6.00465 6.02541 6.04233 6.18692 6.29716 6.43395 6.75598 6.78714 6.99655 7.02646 7.08126 7.15078 7.55337 7.77585 7.84099 7.90489 8.59899 9.00025 9.53448 11.04901 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.010073 B = 0.003511 C = 0.002771 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2779.089129 B = 7972.730261 C =10102.075989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.284 6.284 3 C 0.208 3.792 4 N -0.535 5.535 5 C 0.076 3.924 6 C -0.221 4.221 7 C 0.132 3.868 8 N -0.522 5.522 9 C 0.156 3.844 10 C -0.503 4.503 11 H 0.079 0.921 12 C 0.071 3.929 13 N -0.899 5.899 14 Si 0.862 3.138 15 H -0.277 1.277 16 H -0.285 1.285 17 H -0.259 1.259 18 C 0.066 3.934 19 C 0.062 3.938 20 N -0.538 5.538 21 C 0.014 3.986 22 C 0.064 3.936 23 O -0.389 6.389 24 C 0.065 3.935 25 C 0.019 3.981 26 S 0.186 5.814 27 H 0.059 0.941 28 H 0.099 0.901 29 H 0.061 0.939 30 H 0.176 0.824 31 H 0.088 0.912 32 H 0.037 0.963 33 H 0.035 0.965 34 H -0.014 1.014 35 H 0.263 0.737 36 H 0.031 0.969 37 H 0.090 0.910 38 H 0.047 0.953 39 H 0.067 0.933 40 H 0.045 0.955 41 H 0.097 0.903 42 H 0.058 0.942 43 H 0.098 0.902 44 H 0.057 0.943 45 H 0.093 0.907 46 H 0.082 0.918 47 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.485 5.727 -14.064 15.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.191 6.191 3 C -0.107 4.107 4 N -0.267 5.267 5 C -0.073 4.073 6 C -0.342 4.342 7 C 0.001 3.999 8 N -0.246 5.246 9 C 0.030 3.970 10 C -0.542 4.542 11 H 0.097 0.903 12 C -0.131 4.131 13 N -0.538 5.538 14 Si 0.689 3.311 15 H -0.202 1.202 16 H -0.210 1.210 17 H -0.184 1.184 18 C -0.062 4.062 19 C -0.066 4.066 20 N -0.264 5.264 21 C -0.114 4.114 22 C -0.013 4.013 23 O -0.308 6.308 24 C -0.012 4.012 25 C -0.110 4.110 26 S 0.438 5.562 27 H 0.077 0.923 28 H 0.117 0.883 29 H 0.080 0.920 30 H 0.193 0.807 31 H 0.106 0.894 32 H 0.055 0.945 33 H 0.053 0.947 34 H 0.003 0.997 35 H 0.073 0.927 36 H 0.050 0.950 37 H 0.109 0.891 38 H 0.065 0.935 39 H 0.086 0.914 40 H 0.063 0.937 41 H 0.115 0.885 42 H 0.076 0.924 43 H 0.116 0.884 44 H 0.075 0.925 45 H 0.112 0.888 46 H 0.100 0.900 47 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -3.127 4.848 -13.831 14.986 hybrid contribution -0.368 -0.483 -0.133 0.622 sum -3.495 4.365 -13.963 15.041 Atomic orbital electron populations 1.22966 0.77027 1.03135 1.02684 1.86297 1.22870 1.21448 1.88491 1.25200 0.95456 0.88510 1.01511 1.66604 1.39376 0.97251 1.23475 1.21056 0.88438 0.96978 1.00836 1.25597 0.99198 0.95423 1.13985 1.20439 0.93041 0.94241 0.92180 1.61954 1.44746 1.06656 1.11288 1.20379 0.91846 0.88941 0.95850 1.20936 1.41678 1.03766 0.87786 0.90261 1.24859 0.95450 0.98056 0.94704 1.69879 1.47880 1.34059 1.01940 0.87043 0.79792 0.84324 0.79912 1.20242 1.21038 1.18372 1.21964 0.93148 0.88598 1.02470 1.22110 0.94507 0.89127 1.00890 1.62166 1.40664 1.02805 1.20733 1.22863 0.99509 1.00043 0.89030 1.22699 0.94347 0.84247 0.99959 1.87961 1.76598 1.38079 1.28163 1.22625 0.97232 0.97513 0.83846 1.22740 0.96243 0.90865 1.01138 1.84259 0.99535 1.02503 1.69926 0.92252 0.88308 0.91985 0.80704 0.89395 0.94477 0.94699 0.99660 0.92659 0.95030 0.89132 0.93506 0.91447 0.93655 0.88492 0.92388 0.88439 0.92480 0.88846 0.89952 0.94037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.45 10.63 101.05 1.07 1.52 16 2 O -0.28 -4.32 10.56 -18.34 -0.19 -4.52 16 3 C 0.21 3.51 8.13 51.78 0.42 3.93 16 4 N -0.54 -9.07 9.88 -16.01 -0.16 -9.23 16 5 C 0.08 1.22 11.24 -19.15 -0.22 1.01 16 6 C -0.22 -3.64 5.36 -36.01 -0.19 -3.84 16 7 C 0.13 2.06 5.32 -4.98 -0.03 2.04 16 8 N -0.52 -10.00 4.35 -237.51 -1.03 -11.03 16 9 C 0.16 3.59 3.68 -4.98 -0.02 3.58 16 10 C -0.50 -13.82 9.06 -34.44 -0.31 -14.13 16 11 H 0.08 2.38 7.99 -52.48 -0.42 1.96 16 12 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 13 N -0.90 -27.15 13.96 55.43 0.77 -26.37 16 14 Si 0.86 21.06 27.57 -169.99 -4.69 16.37 16 15 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 16 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 17 H -0.26 -5.99 6.41 56.52 0.36 -5.63 16 18 C 0.07 1.14 4.85 -3.82 -0.02 1.12 16 19 C 0.06 0.89 5.00 -3.83 -0.02 0.87 16 20 N -0.54 -7.23 4.73 -234.32 -1.11 -8.34 16 21 C 0.01 0.19 5.44 -3.71 -0.02 0.17 16 22 C 0.06 0.79 7.01 37.21 0.26 1.05 16 23 O -0.39 -5.07 10.83 -35.23 -0.38 -5.45 16 24 C 0.06 0.68 7.01 37.21 0.26 0.94 16 25 C 0.02 0.21 5.64 -3.71 -0.02 0.19 16 26 S 0.19 3.14 21.41 -107.50 -2.30 0.84 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 28 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.18 2.38 8.06 -52.48 -0.42 1.96 16 31 H 0.09 1.15 6.71 -51.93 -0.35 0.80 16 32 H 0.04 0.57 8.12 -51.93 -0.42 0.14 16 33 H 0.04 0.82 3.95 -51.93 -0.21 0.61 16 34 H -0.01 -0.33 7.67 -51.93 -0.40 -0.73 16 35 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 36 H 0.03 0.52 8.00 -51.93 -0.42 0.10 16 37 H 0.09 1.78 5.40 -51.93 -0.28 1.50 16 38 H 0.05 0.76 8.12 -51.93 -0.42 0.34 16 39 H 0.07 0.86 6.84 -51.93 -0.36 0.51 16 40 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.10 1.46 6.30 -51.93 -0.33 1.13 16 42 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 46 H 0.08 0.79 8.09 -51.93 -0.42 0.37 16 47 H 0.04 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 384.56 15.07 5.80 5.80 Total: -1.00 -31.87 384.56 -9.63 -41.50 By element: Atomic # 1 Polarization: 7.48 SS G_CDS: -7.41 Total: 0.06 kcal Atomic # 6 Polarization: -0.70 SS G_CDS: 1.08 Total: 0.37 kcal Atomic # 7 Polarization: -53.45 SS G_CDS: -1.52 Total: -54.97 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: -0.58 Total: -9.97 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -4.69 Total: 16.37 kcal Atomic # 16 Polarization: 3.14 SS G_CDS: -2.30 Total: 0.84 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.87 -9.63 -41.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589820514.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.194 kcal (2) G-P(sol) polarization free energy of solvation -31.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds