Wall clock time and date at job start Sat Apr 11 2020 06:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.35211 * 125.75664 * 2 1 4 4 C 1.36478 * 106.04920 * 180.13986 * 3 2 1 5 5 C 1.48456 * 126.90528 * 179.89078 * 4 3 2 6 6 C 1.39375 * 120.08177 * 359.68536 * 5 4 3 7 7 C 1.38047 * 120.01477 * 180.02562 * 6 5 4 8 8 C 1.38215 * 120.19654 * 359.67966 * 7 6 5 9 9 C 1.38923 * 120.16226 * 0.59626 * 8 7 6 10 10 N 1.39967 * 120.00787 * 179.69640 * 9 8 7 11 11 C 1.34773 * 120.00059 * 332.58210 * 10 9 8 12 12 O 1.21592 * 119.99821 * 5.68222 * 11 10 9 13 13 N 1.34772 * 120.00237 * 185.68076 * 11 10 9 14 14 C 1.46501 * 120.00337 * 176.28080 * 13 11 10 15 15 C 1.53001 * 109.47327 * 185.50101 * 14 13 11 16 16 C 1.50705 * 115.54709 * 68.83107 * 15 14 13 17 17 H 1.07992 * 120.00164 * 264.34561 * 16 15 14 18 18 C 1.37883 * 119.99695 * 84.34045 * 16 15 14 19 19 N 1.31516 * 119.99846 * 174.37057 * 18 16 15 20 20 Si 1.86804 * 120.00053 * 354.36426 * 18 16 15 21 21 H 1.48503 * 109.46856 * 88.34544 * 20 18 16 22 22 H 1.48495 * 109.46907 * 208.34541 * 20 18 16 23 23 H 1.48498 * 109.47087 * 328.34477 * 20 18 16 24 24 C 1.52993 * 117.50256 * 283.16490 * 15 14 13 25 25 C 1.53000 * 117.50138 * 214.49988 * 15 14 13 26 26 C 1.38676 * 119.98040 * 359.43042 * 9 8 7 27 27 N 1.34500 * 106.18730 * 359.62931 * 4 3 2 28 28 N 1.28607 * 108.78797 * 0.23671 * 27 4 3 29 29 H 1.09000 * 109.47422 * 270.31069 * 1 2 3 30 30 H 1.09002 * 109.47141 * 30.30776 * 1 2 3 31 31 H 1.09000 * 109.47624 * 150.30824 * 1 2 3 32 32 H 1.08004 * 126.96999 * 0.02854 * 3 2 1 33 33 H 1.07997 * 119.99206 * 0.02967 * 6 5 4 34 34 H 1.08003 * 119.89682 * 179.97438 * 7 6 5 35 35 H 1.08000 * 119.92198 * 180.32241 * 8 7 6 36 36 H 0.97000 * 119.99768 * 152.58211 * 10 9 8 37 37 H 0.97004 * 119.99797 * 356.00651 * 13 11 10 38 38 H 1.08998 * 109.47464 * 305.50471 * 14 13 11 39 39 H 1.09002 * 109.46770 * 65.50520 * 14 13 11 40 40 H 0.97000 * 119.99849 * 180.02562 * 19 18 16 41 41 H 1.08997 * 117.50045 * 359.97438 * 24 15 14 42 42 H 1.09002 * 117.49930 * 145.01915 * 24 15 14 43 43 H 1.09004 * 117.49614 * 214.98206 * 25 15 14 44 44 H 1.08996 * 117.50028 * 359.97438 * 25 15 14 45 45 H 1.08005 * 120.09462 * 180.25256 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2550 1.0972 0.0000 4 6 3.5399 0.6370 -0.0032 5 6 4.7794 1.4540 -0.0068 6 6 4.6990 2.8454 -0.0137 7 6 5.8526 3.6037 -0.0175 8 6 7.0897 2.9874 -0.0078 9 6 7.1789 1.6010 -0.0067 10 7 8.4334 0.9803 -0.0033 11 6 9.4981 1.6097 -0.5386 12 8 9.3929 2.7558 -0.9308 13 7 10.6794 0.9688 -0.6393 14 6 11.8145 1.6233 -1.2947 15 6 12.9813 0.6389 -1.3971 16 6 12.7784 -0.5127 -2.3479 17 1 12.4237 -1.4629 -1.9772 18 6 13.0457 -0.3530 -3.6911 19 7 12.9757 -1.3854 -4.5028 20 14 13.5072 1.3298 -4.3580 21 1 14.9776 1.5142 -4.2615 22 1 13.0877 1.4312 -5.7788 23 1 12.8232 2.3816 -3.5636 24 6 13.7947 0.3730 -0.1290 25 6 14.3966 1.2046 -1.2645 26 6 6.0247 0.8324 -0.0033 27 7 3.4573 -0.7054 0.0034 28 7 2.2166 -1.0441 0.0051 29 1 -0.3634 0.0056 1.0276 30 1 -0.3633 0.8872 -0.5186 31 1 -0.3634 -0.8927 -0.5090 32 1 1.9343 2.1286 0.0004 33 1 3.7341 3.3304 -0.0160 34 1 5.7881 4.6818 -0.0233 35 1 7.9893 3.5850 -0.0056 36 1 8.5364 0.0972 0.3844 37 1 10.7793 0.0756 -0.2742 38 1 11.5212 1.9444 -2.2942 39 1 12.1211 2.4905 -0.7098 40 1 13.1641 -1.2731 -5.4476 41 1 13.4990 0.8997 0.7783 42 1 14.1836 -0.6347 0.0175 43 1 15.1811 0.7436 -1.8647 44 1 14.4966 2.2781 -1.1047 45 1 6.0919 -0.2456 0.0017 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597117769.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:10 Heat of formation + Delta-G solvation = 134.828358 kcal Electronic energy + Delta-G solvation = -27974.637650 eV Core-core repulsion = 23995.864653 eV Total energy + Delta-G solvation = -3978.772997 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.47342 -40.40615 -38.62758 -37.14819 -35.16693 -34.53187 -33.61847 -32.32590 -32.12359 -30.24311 -29.08760 -28.24358 -26.62803 -25.13455 -23.99322 -22.98362 -21.88571 -21.54876 -21.40481 -20.23088 -19.28606 -18.08226 -17.98205 -17.02688 -16.93015 -16.25745 -16.15901 -15.41410 -15.22429 -14.92559 -14.79339 -14.31800 -14.26132 -13.89897 -13.86100 -13.65020 -13.37794 -13.27905 -12.90326 -12.78019 -12.46434 -12.20381 -12.09820 -11.79229 -11.41216 -11.14700 -11.05537 -10.76038 -10.63954 -10.55161 -10.31524 -10.18700 -9.92172 -9.74326 -9.52665 -9.21268 -8.65310 -8.60566 -8.50180 -8.39022 -7.82392 -6.15407 -4.19502 0.87065 1.40125 1.45021 1.98740 2.56204 2.88042 3.30028 3.39826 3.43528 3.47541 3.88493 4.00266 4.16273 4.40342 4.41868 4.45901 4.49915 4.73280 4.75636 4.92991 5.01490 5.09116 5.12732 5.24935 5.37748 5.54543 5.64155 5.66969 5.76075 6.00344 6.03883 6.05398 6.18381 6.20578 6.36322 6.36882 6.41151 6.48865 6.55356 6.62467 6.69299 6.99097 7.05935 7.10128 7.14189 7.28218 7.67651 8.20875 8.33493 8.41241 8.85135 8.87775 9.47708 10.95943 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017165 B = 0.002169 C = 0.002074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.862748 B =12905.783911 C =13495.888963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.295 5.295 3 C -0.041 4.041 4 C 0.029 3.971 5 C 0.006 3.994 6 C -0.131 4.131 7 C -0.099 4.099 8 C -0.127 4.127 9 C 0.180 3.820 10 N -0.687 5.687 11 C 0.701 3.299 12 O -0.584 6.584 13 N -0.712 5.712 14 C 0.169 3.831 15 C -0.018 4.018 16 C -0.490 4.490 17 H 0.077 0.923 18 C 0.080 3.920 19 N -0.894 5.894 20 Si 0.875 3.125 21 H -0.276 1.276 22 H -0.293 1.293 23 H -0.255 1.255 24 C -0.178 4.178 25 C -0.190 4.190 26 C -0.127 4.127 27 N -0.255 5.255 28 N -0.084 5.084 29 H 0.092 0.908 30 H 0.099 0.901 31 H 0.102 0.898 32 H 0.194 0.806 33 H 0.120 0.880 34 H 0.127 0.873 35 H 0.158 0.842 36 H 0.408 0.592 37 H 0.401 0.599 38 H 0.071 0.929 39 H 0.043 0.957 40 H 0.266 0.734 41 H 0.073 0.927 42 H 0.088 0.912 43 H 0.091 0.909 44 H 0.074 0.926 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.228 7.773 12.104 27.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.088 5.088 3 C -0.192 4.192 4 C -0.107 4.107 5 C 0.003 3.997 6 C -0.152 4.152 7 C -0.118 4.118 8 C -0.148 4.148 9 C 0.084 3.916 10 N -0.333 5.333 11 C 0.401 3.599 12 O -0.463 6.463 13 N -0.364 5.364 14 C 0.046 3.954 15 C -0.020 4.020 16 C -0.527 4.527 17 H 0.095 0.905 18 C -0.123 4.123 19 N -0.530 5.530 20 Si 0.702 3.298 21 H -0.202 1.202 22 H -0.219 1.219 23 H -0.179 1.179 24 C -0.215 4.215 25 C -0.228 4.228 26 C -0.149 4.149 27 N -0.122 5.122 28 N -0.064 5.064 29 H 0.110 0.890 30 H 0.118 0.882 31 H 0.121 0.879 32 H 0.211 0.789 33 H 0.138 0.862 34 H 0.145 0.855 35 H 0.175 0.825 36 H 0.243 0.757 37 H 0.235 0.765 38 H 0.089 0.911 39 H 0.061 0.939 40 H 0.075 0.925 41 H 0.092 0.908 42 H 0.106 0.894 43 H 0.109 0.891 44 H 0.092 0.908 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -23.206 7.122 11.487 26.855 hybrid contribution 0.109 1.026 -0.280 1.069 sum -23.097 8.148 11.206 26.934 Atomic orbital electron populations 1.22286 0.72580 1.06066 1.05063 1.47147 1.09468 1.04861 1.47295 1.23511 0.90585 0.94650 1.10432 1.20425 0.92760 0.90653 1.06884 1.17245 0.88717 0.91436 1.02257 1.20912 0.98643 0.91966 1.03663 1.20937 0.91600 0.99796 0.99469 1.21846 0.99706 0.93462 0.99778 1.17473 0.83584 0.91990 0.98583 1.42663 1.06472 1.21694 1.62471 1.15968 0.80404 0.84804 0.78681 1.90800 1.83558 1.16436 1.55507 1.45063 1.09741 1.20256 1.61349 1.21231 0.84459 0.93267 0.96485 1.19631 0.87757 0.97174 0.97420 1.20163 1.45966 0.95899 0.90680 0.90455 1.24960 0.94044 0.96480 0.96820 1.69892 1.48499 1.29961 1.04689 0.86941 0.79207 0.85583 0.78037 1.20206 1.21938 1.17908 1.22813 1.06510 1.00356 0.91829 1.22971 0.98812 0.97545 1.03425 1.20808 0.90047 1.00209 1.03856 1.75306 1.08994 1.11668 1.16210 1.78270 0.96488 1.12033 1.19609 0.88988 0.88208 0.87914 0.78939 0.86250 0.85540 0.82495 0.75660 0.76484 0.91106 0.93918 0.92462 0.90849 0.89381 0.89066 0.90761 0.84870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.21 11.38 59.84 0.68 0.89 16 2 N -0.29 -2.43 3.73 -67.79 -0.25 -2.69 16 3 C -0.04 -0.34 11.01 -16.70 -0.18 -0.52 16 4 C 0.03 0.35 6.99 -83.12 -0.58 -0.23 16 5 C 0.01 0.08 5.87 -104.91 -0.62 -0.54 16 6 C -0.13 -1.36 9.58 -39.23 -0.38 -1.74 16 7 C -0.10 -1.14 10.03 -39.66 -0.40 -1.54 16 8 C -0.13 -1.84 8.78 -39.34 -0.35 -2.19 16 9 C 0.18 2.63 6.43 -83.73 -0.54 2.09 16 10 N -0.69 -10.08 5.37 -14.25 -0.08 -10.15 16 11 C 0.70 12.70 8.45 -86.93 -0.73 11.96 16 12 O -0.58 -12.21 13.31 5.28 0.07 -12.14 16 13 N -0.71 -12.95 5.52 -65.23 -0.36 -13.31 16 14 C 0.17 3.51 5.06 -4.04 -0.02 3.49 16 15 C -0.02 -0.40 0.80 -155.66 -0.12 -0.53 16 16 C -0.49 -12.84 9.35 -34.44 -0.32 -13.16 16 17 H 0.08 2.19 8.06 -52.49 -0.42 1.77 16 18 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 19 N -0.89 -26.63 13.96 55.43 0.77 -25.86 16 20 Si 0.87 21.38 25.31 -169.99 -4.30 17.08 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 23 H -0.25 -5.97 5.37 56.52 0.30 -5.67 16 24 C -0.18 -3.32 9.96 -26.70 -0.27 -3.58 16 25 C -0.19 -3.81 7.86 -26.69 -0.21 -4.02 16 26 C -0.13 -1.73 9.60 -39.07 -0.38 -2.10 16 27 N -0.25 -3.61 12.16 33.06 0.40 -3.21 16 28 N -0.08 -1.04 13.14 60.35 0.79 -0.25 16 29 H 0.09 0.09 8.14 -51.93 -0.42 -0.33 16 30 H 0.10 -0.01 8.14 -51.93 -0.42 -0.43 16 31 H 0.10 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.19 0.77 7.40 -52.48 -0.39 0.38 16 33 H 0.12 0.83 7.11 -52.49 -0.37 0.45 16 34 H 0.13 1.14 8.06 -52.48 -0.42 0.71 16 35 H 0.16 2.57 5.59 -52.49 -0.29 2.28 16 36 H 0.41 4.79 8.81 -40.82 -0.36 4.43 16 37 H 0.40 6.56 8.50 -40.82 -0.35 6.22 16 38 H 0.07 1.66 5.98 -51.93 -0.31 1.35 16 39 H 0.04 0.84 8.07 -51.93 -0.42 0.42 16 40 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 41 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 42 H 0.09 1.66 8.14 -51.93 -0.42 1.23 16 43 H 0.09 1.94 7.74 -51.93 -0.40 1.53 16 44 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 45 H 0.13 1.78 7.90 -52.48 -0.41 1.36 16 LS Contribution 379.05 15.07 5.71 5.71 Total: -1.00 -35.44 379.05 -7.67 -43.11 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: -5.92 Total: 11.29 kcal Atomic # 6 Polarization: -5.07 SS G_CDS: -4.51 Total: -9.57 kcal Atomic # 7 Polarization: -56.75 SS G_CDS: 1.28 Total: -55.47 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: 0.07 Total: -12.14 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -4.30 Total: 17.08 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -35.44 -7.67 -43.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597117769.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.934 kcal (2) G-P(sol) polarization free energy of solvation -35.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 142.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 134.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds