Wall clock time and date at job start Sat Apr 11 2020 06:22:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.35211 * 125.75664 * 2 1 4 4 C 1.36478 * 106.04920 * 180.13986 * 3 2 1 5 5 C 1.48456 * 126.90528 * 179.89078 * 4 3 2 6 6 C 1.39375 * 120.08177 * 359.68536 * 5 4 3 7 7 C 1.38047 * 120.01477 * 180.02562 * 6 5 4 8 8 C 1.38215 * 120.19654 * 359.67966 * 7 6 5 9 9 C 1.38923 * 120.16226 * 0.59626 * 8 7 6 10 10 N 1.39967 * 120.00787 * 179.69640 * 9 8 7 11 11 C 1.34773 * 120.00059 * 332.58210 * 10 9 8 12 12 O 1.21592 * 119.99821 * 5.68222 * 11 10 9 13 13 N 1.34772 * 120.00237 * 185.68076 * 11 10 9 14 14 C 1.46501 * 120.00337 * 176.28080 * 13 11 10 15 15 C 1.53001 * 109.47327 * 185.50101 * 14 13 11 16 16 C 1.50705 * 115.54709 * 68.83107 * 15 14 13 17 17 H 1.07992 * 120.00164 * 264.34561 * 16 15 14 18 18 C 1.37883 * 119.99695 * 84.34045 * 16 15 14 19 19 N 1.31516 * 119.99846 * 174.37057 * 18 16 15 20 20 Si 1.86804 * 120.00053 * 354.36426 * 18 16 15 21 21 H 1.48503 * 109.46856 * 88.34544 * 20 18 16 22 22 H 1.48495 * 109.46907 * 208.34541 * 20 18 16 23 23 H 1.48498 * 109.47087 * 328.34477 * 20 18 16 24 24 C 1.52993 * 117.50256 * 283.16490 * 15 14 13 25 25 C 1.53000 * 117.50138 * 214.49988 * 15 14 13 26 26 C 1.38676 * 119.98040 * 359.43042 * 9 8 7 27 27 N 1.34500 * 106.18730 * 359.62931 * 4 3 2 28 28 N 1.28607 * 108.78797 * 0.23671 * 27 4 3 29 29 H 1.09000 * 109.47422 * 270.31069 * 1 2 3 30 30 H 1.09002 * 109.47141 * 30.30776 * 1 2 3 31 31 H 1.09000 * 109.47624 * 150.30824 * 1 2 3 32 32 H 1.08004 * 126.96999 * 0.02854 * 3 2 1 33 33 H 1.07997 * 119.99206 * 0.02967 * 6 5 4 34 34 H 1.08003 * 119.89682 * 179.97438 * 7 6 5 35 35 H 1.08000 * 119.92198 * 180.32241 * 8 7 6 36 36 H 0.97000 * 119.99768 * 152.58211 * 10 9 8 37 37 H 0.97004 * 119.99797 * 356.00651 * 13 11 10 38 38 H 1.08998 * 109.47464 * 305.50471 * 14 13 11 39 39 H 1.09002 * 109.46770 * 65.50520 * 14 13 11 40 40 H 0.97000 * 119.99849 * 180.02562 * 19 18 16 41 41 H 1.08997 * 117.50045 * 359.97438 * 24 15 14 42 42 H 1.09002 * 117.49930 * 145.01915 * 24 15 14 43 43 H 1.09004 * 117.49614 * 214.98206 * 25 15 14 44 44 H 1.08996 * 117.50028 * 359.97438 * 25 15 14 45 45 H 1.08005 * 120.09462 * 180.25256 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2550 1.0972 0.0000 4 6 3.5399 0.6370 -0.0032 5 6 4.7794 1.4540 -0.0068 6 6 4.6990 2.8454 -0.0137 7 6 5.8526 3.6037 -0.0175 8 6 7.0897 2.9874 -0.0078 9 6 7.1789 1.6010 -0.0067 10 7 8.4334 0.9803 -0.0033 11 6 9.4981 1.6097 -0.5386 12 8 9.3929 2.7558 -0.9308 13 7 10.6794 0.9688 -0.6393 14 6 11.8145 1.6233 -1.2947 15 6 12.9813 0.6389 -1.3971 16 6 12.7784 -0.5127 -2.3479 17 1 12.4237 -1.4629 -1.9772 18 6 13.0457 -0.3530 -3.6911 19 7 12.9757 -1.3854 -4.5028 20 14 13.5072 1.3298 -4.3580 21 1 14.9776 1.5142 -4.2615 22 1 13.0877 1.4312 -5.7788 23 1 12.8232 2.3816 -3.5636 24 6 13.7947 0.3730 -0.1290 25 6 14.3966 1.2046 -1.2645 26 6 6.0247 0.8324 -0.0033 27 7 3.4573 -0.7054 0.0034 28 7 2.2166 -1.0441 0.0051 29 1 -0.3634 0.0056 1.0276 30 1 -0.3633 0.8872 -0.5186 31 1 -0.3634 -0.8927 -0.5090 32 1 1.9343 2.1286 0.0004 33 1 3.7341 3.3304 -0.0160 34 1 5.7881 4.6818 -0.0233 35 1 7.9893 3.5850 -0.0056 36 1 8.5364 0.0972 0.3844 37 1 10.7793 0.0756 -0.2742 38 1 11.5212 1.9444 -2.2942 39 1 12.1211 2.4905 -0.7098 40 1 13.1641 -1.2731 -5.4476 41 1 13.4990 0.8997 0.7783 42 1 14.1836 -0.6347 0.0175 43 1 15.1811 0.7436 -1.8647 44 1 14.4966 2.2781 -1.1047 45 1 6.0919 -0.2456 0.0017 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597117769.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:09 Heat of formation + Delta-G solvation = 109.028086 kcal Electronic energy + Delta-G solvation = -27975.756434 eV Core-core repulsion = 23995.864653 eV Total energy + Delta-G solvation = -3979.891781 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.19889 -41.68014 -39.79562 -38.72948 -36.04357 -35.52296 -35.09473 -34.21529 -33.19120 -31.19176 -30.04622 -28.70805 -28.33495 -26.96195 -24.89928 -23.86585 -23.33270 -22.74056 -22.20064 -21.47889 -20.98483 -19.38634 -18.98734 -18.32305 -17.63589 -17.56001 -17.16792 -16.99682 -16.50914 -16.22697 -16.00945 -15.66406 -15.30114 -15.00049 -14.85258 -14.73611 -14.52892 -14.31833 -14.21416 -13.86780 -13.78451 -13.61856 -13.09163 -13.04440 -12.63579 -12.54578 -12.32201 -12.17174 -11.97876 -11.85748 -11.70606 -11.64551 -11.17382 -10.98159 -10.95550 -10.68551 -10.65985 -10.36876 -9.97111 -9.39209 -8.88674 -8.30338 -6.35940 0.03015 0.42904 0.68916 1.34456 1.39591 1.48302 1.53056 1.60063 1.67279 2.13787 2.36461 3.01198 3.02578 3.07687 3.20457 3.41561 3.70047 3.92161 4.03587 4.06075 4.15613 4.31821 4.36958 4.37400 4.37916 4.44010 4.52454 4.55643 4.63320 4.67426 4.80140 4.82792 4.86231 4.90033 5.11694 5.15260 5.32768 5.35660 5.43974 5.50246 5.54906 5.61152 5.65751 5.69162 5.70080 6.02773 6.11832 6.28172 6.72227 7.00726 7.34046 7.44356 7.47992 8.84557 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.017165 B = 0.002169 C = 0.002074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1630.862748 B =12905.783911 C =13495.888963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.285 5.285 3 C -0.012 4.012 4 C -0.005 4.005 5 C 0.004 3.996 6 C -0.115 4.115 7 C -0.094 4.094 8 C -0.150 4.150 9 C 0.157 3.843 10 N -0.677 5.677 11 C 0.700 3.300 12 O -0.613 6.613 13 N -0.712 5.712 14 C 0.180 3.820 15 C -0.044 4.044 16 C -0.477 4.477 17 H 0.041 0.959 18 C 0.023 3.977 19 N -0.946 5.946 20 Si 0.927 3.073 21 H -0.262 1.262 22 H -0.304 1.304 23 H -0.238 1.238 24 C -0.150 4.150 25 C -0.187 4.187 26 C -0.140 4.140 27 N -0.302 5.302 28 N -0.121 5.121 29 H 0.111 0.889 30 H 0.135 0.865 31 H 0.104 0.896 32 H 0.244 0.756 33 H 0.167 0.833 34 H 0.156 0.844 35 H 0.135 0.865 36 H 0.419 0.581 37 H 0.408 0.592 38 H 0.040 0.960 39 H 0.060 0.940 40 H 0.264 0.736 41 H 0.106 0.894 42 H 0.084 0.916 43 H 0.077 0.923 44 H 0.101 0.899 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.756 10.893 13.710 31.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 N -0.078 5.078 3 C -0.164 4.164 4 C -0.143 4.143 5 C 0.001 3.999 6 C -0.135 4.135 7 C -0.113 4.113 8 C -0.171 4.171 9 C 0.061 3.939 10 N -0.324 5.324 11 C 0.400 3.600 12 O -0.494 6.494 13 N -0.365 5.365 14 C 0.056 3.944 15 C -0.045 4.045 16 C -0.514 4.514 17 H 0.060 0.940 18 C -0.175 4.175 19 N -0.586 5.586 20 Si 0.752 3.248 21 H -0.187 1.187 22 H -0.231 1.231 23 H -0.162 1.162 24 C -0.187 4.187 25 C -0.225 4.225 26 C -0.162 4.162 27 N -0.168 5.168 28 N -0.100 5.100 29 H 0.130 0.870 30 H 0.154 0.846 31 H 0.123 0.877 32 H 0.260 0.740 33 H 0.184 0.816 34 H 0.174 0.826 35 H 0.153 0.847 36 H 0.256 0.744 37 H 0.244 0.756 38 H 0.058 0.942 39 H 0.079 0.921 40 H 0.073 0.927 41 H 0.124 0.876 42 H 0.102 0.898 43 H 0.096 0.904 44 H 0.120 0.880 45 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -25.778 10.199 13.143 30.680 hybrid contribution 0.657 0.009 -0.691 0.954 sum -25.121 10.208 12.451 29.838 Atomic orbital electron populations 1.22817 0.69315 1.08005 1.06968 1.47637 1.11232 1.04060 1.44852 1.24195 0.89001 0.96414 1.06822 1.20635 0.94156 0.90255 1.09253 1.17509 0.88375 0.92624 1.01385 1.21338 1.00256 0.90860 1.01000 1.21272 0.90660 1.01362 0.97961 1.21800 1.00414 0.93198 1.01673 1.17640 0.83413 0.92454 1.00389 1.42488 1.06010 1.21990 1.61863 1.16057 0.80800 0.84537 0.78588 1.90782 1.84108 1.17719 1.56794 1.44948 1.09569 1.20555 1.61395 1.20923 0.84512 0.93540 0.95428 1.19451 0.89292 0.96768 0.99025 1.20352 1.43675 0.96089 0.91329 0.94037 1.25739 0.94722 0.99569 0.97439 1.70034 1.51424 1.32188 1.04918 0.86093 0.79764 0.82109 0.76831 1.18654 1.23116 1.16171 1.22847 1.03622 1.00418 0.91831 1.23035 0.96578 0.99285 1.03589 1.20810 0.90692 0.99809 1.04902 1.75233 1.10348 1.13466 1.17786 1.78179 0.96461 1.13775 1.21602 0.87050 0.84636 0.87725 0.73959 0.81586 0.82643 0.84734 0.74372 0.75637 0.94198 0.92149 0.92742 0.87600 0.89758 0.90428 0.88025 0.85890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.10 11.38 127.77 1.45 1.55 16 2 N -0.28 -3.94 3.73 -368.38 -1.37 -5.32 16 3 C -0.01 -0.15 11.01 83.76 0.92 0.77 16 4 C -0.01 -0.12 6.99 41.05 0.29 0.17 16 5 C 0.00 0.09 5.87 -20.05 -0.12 -0.03 16 6 C -0.11 -1.98 9.58 22.50 0.22 -1.76 16 7 C -0.09 -1.93 10.03 22.22 0.22 -1.71 16 8 C -0.15 -4.32 8.78 22.43 0.20 -4.13 16 9 C 0.16 4.68 6.43 38.11 0.24 4.93 16 10 N -0.68 -20.55 5.37 -317.27 -1.70 -22.25 16 11 C 0.70 25.81 8.45 179.06 1.51 27.33 16 12 O -0.61 -26.07 13.31 -4.00 -0.05 -26.13 16 13 N -0.71 -26.01 5.52 -478.54 -2.64 -28.65 16 14 C 0.18 7.35 5.06 86.38 0.44 7.79 16 15 C -0.04 -1.87 0.80 -52.93 -0.04 -1.92 16 16 C -0.48 -25.61 9.35 25.60 0.24 -25.37 16 17 H 0.04 2.46 8.06 -2.91 -0.02 2.44 16 18 C 0.02 1.32 5.47 84.66 0.46 1.79 16 19 N -0.95 -58.72 13.96 21.45 0.30 -58.42 16 20 Si 0.93 44.58 25.31 68.60 1.74 46.31 16 21 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 22 H -0.30 -15.06 7.11 99.48 0.71 -14.35 16 23 H -0.24 -10.76 5.37 99.48 0.53 -10.23 16 24 C -0.15 -5.25 9.96 30.62 0.30 -4.95 16 25 C -0.19 -7.08 7.86 30.62 0.24 -6.84 16 26 C -0.14 -3.90 9.60 22.60 0.22 -3.68 16 27 N -0.30 -8.66 12.16 -49.31 -0.60 -9.26 16 28 N -0.12 -2.94 13.14 37.02 0.49 -2.45 16 29 H 0.11 -0.20 8.14 -2.39 -0.02 -0.22 16 30 H 0.14 -0.73 8.14 -2.39 -0.02 -0.75 16 31 H 0.10 0.16 8.14 -2.39 -0.02 0.14 16 32 H 0.24 0.28 7.40 -2.91 -0.02 0.26 16 33 H 0.17 1.26 7.11 -2.91 -0.02 1.24 16 34 H 0.16 2.23 8.06 -2.91 -0.02 2.21 16 35 H 0.14 4.51 5.59 -2.91 -0.02 4.49 16 36 H 0.42 10.34 8.81 -92.71 -0.82 9.52 16 37 H 0.41 13.49 8.50 -92.70 -0.79 12.71 16 38 H 0.04 1.87 5.98 -2.39 -0.01 1.85 16 39 H 0.06 2.25 8.07 -2.39 -0.02 2.24 16 40 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 41 H 0.11 3.07 8.14 -2.39 -0.02 3.05 16 42 H 0.08 3.03 8.14 -2.39 -0.02 3.01 16 43 H 0.08 3.16 7.74 -2.38 -0.02 3.14 16 44 H 0.10 3.32 8.14 -2.39 -0.02 3.30 16 45 H 0.12 3.55 7.90 -2.91 -0.02 3.53 16 Total: -1.00 -83.24 379.05 2.22 -81.02 By element: Atomic # 1 Polarization: 31.94 SS G_CDS: -0.72 Total: 31.22 kcal Atomic # 6 Polarization: -12.86 SS G_CDS: 6.80 Total: -6.07 kcal Atomic # 7 Polarization: -120.82 SS G_CDS: -5.53 Total: -126.36 kcal Atomic # 8 Polarization: -26.07 SS G_CDS: -0.05 Total: -26.13 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 1.74 Total: 46.31 kcal Total: -83.24 2.22 -81.02 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597117769.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.048 kcal (2) G-P(sol) polarization free energy of solvation -83.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.803 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.020 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds