Wall clock time and date at job start Sat Apr 11 2020 06:22:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50704 * 120.00254 * 2 1 4 4 N 1.46502 * 109.46983 * 124.99456 * 3 2 1 5 5 C 1.46496 * 120.00139 * 270.00035 * 4 3 2 6 6 C 1.50703 * 109.47131 * 270.00387 * 5 4 3 7 7 H 1.08003 * 120.00166 * 359.97438 * 6 5 4 8 8 C 1.37883 * 119.99919 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00104 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99898 * 180.02562 * 8 6 5 11 11 H 1.48492 * 109.47182 * 59.99906 * 10 8 6 12 12 H 1.48501 * 109.47131 * 180.02562 * 10 8 6 13 13 H 1.48497 * 109.46967 * 300.00082 * 10 8 6 14 14 C 1.34771 * 119.99687 * 90.00484 * 4 3 2 15 15 O 1.21590 * 119.99726 * 179.97438 * 14 4 3 16 16 N 1.34774 * 120.00135 * 359.97438 * 14 4 3 17 17 C 1.39963 * 120.00061 * 185.29844 * 16 14 4 18 18 C 1.38966 * 120.01026 * 213.23661 * 17 16 14 19 19 C 1.38176 * 120.16505 * 180.02562 * 18 17 16 20 20 C 1.38092 * 120.19082 * 0.02562 * 19 18 17 21 21 C 1.39328 * 120.02338 * 359.95073 * 20 19 18 22 22 C 1.48452 * 120.08474 * 180.02562 * 21 20 19 23 23 C 1.36483 * 126.90302 * 4.99586 * 22 21 20 24 24 N 1.35207 * 106.04342 * 179.97438 * 23 22 21 25 25 C 1.46505 * 125.74909 * 180.02562 * 24 23 22 26 26 N 1.28647 * 108.50113 * 0.02562 * 24 23 22 27 27 N 1.28615 * 110.47950 * 359.97438 * 26 24 23 28 28 C 1.38643 * 120.00901 * 33.47186 * 17 16 14 29 29 H 1.07998 * 119.99510 * 0.02562 * 1 2 3 30 30 H 1.08002 * 119.99909 * 179.97438 * 1 2 3 31 31 H 1.08003 * 120.00383 * 179.97438 * 2 1 3 32 32 H 1.09000 * 109.46702 * 4.99869 * 3 2 1 33 33 H 1.08996 * 109.46915 * 244.99644 * 3 2 1 34 34 H 1.09004 * 109.47456 * 30.00331 * 5 4 3 35 35 H 1.08997 * 109.47261 * 150.00340 * 5 4 3 36 36 H 0.96999 * 119.99954 * 180.02562 * 9 8 6 37 37 H 0.97001 * 120.00368 * 5.30015 * 16 14 4 38 38 H 1.07995 * 119.91496 * 0.02562 * 18 17 16 39 39 H 1.07997 * 119.89972 * 179.97438 * 19 18 17 40 40 H 1.08006 * 119.98216 * 179.97438 * 20 19 18 41 41 H 1.08001 * 126.98178 * 0.02562 * 23 22 21 42 42 H 1.09004 * 109.47175 * 90.00492 * 25 24 23 43 43 H 1.09010 * 109.47007 * 209.99888 * 25 24 23 44 44 H 1.08993 * 109.47423 * 329.99653 * 25 24 23 45 45 H 1.07998 * 120.09570 * 359.97244 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3319 1.1315 5 6 2.5588 1.8649 2.4249 6 6 2.8442 3.3437 2.4804 7 1 3.3040 3.8370 1.6368 8 6 2.5183 4.0668 3.6082 9 7 1.9588 3.4661 4.6357 10 14 2.8714 5.8999 3.6767 11 1 2.1357 6.5868 2.5850 12 1 2.4306 6.4402 4.9878 13 1 4.3292 6.1296 3.5121 14 6 4.2497 0.8662 0.9825 15 8 5.0218 0.8888 1.9215 16 7 4.6497 0.3753 -0.2072 17 6 5.9150 -0.2094 -0.3333 18 6 6.6189 -0.0928 -1.5258 19 6 7.8681 -0.6693 -1.6540 20 6 8.4236 -1.3647 -0.5982 21 6 7.7251 -1.4861 0.6012 22 6 8.3212 -2.2329 1.7372 23 6 9.5735 -2.7725 1.7963 24 7 9.6738 -3.3515 3.0140 25 6 10.8473 -4.0602 3.5307 26 7 8.5653 -3.1751 3.6425 27 7 7.7360 -2.5137 2.9152 28 6 6.4645 -0.9093 0.7299 29 1 -0.5399 0.9353 -0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 1.8501 -0.9353 0.0004 32 1 1.3586 2.1316 0.0895 33 1 2.6214 1.4025 -0.9313 34 1 1.4887 1.6967 2.5460 35 1 3.0988 1.3604 3.2260 36 1 1.7292 3.9749 5.4289 37 1 4.0607 0.4274 -0.9762 38 1 6.1884 0.4497 -2.3545 39 1 8.4111 -0.5764 -2.5829 40 1 9.4001 -1.8143 -0.7022 41 1 10.3309 -2.7424 1.0270 42 1 11.4988 -3.3557 4.0478 43 1 10.5263 -4.8358 4.2262 44 1 11.3898 -4.5166 2.7028 45 1 5.9177 -1.0039 1.6564 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597118620.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:12 Heat of formation + Delta-G solvation = 136.107279 kcal Electronic energy + Delta-G solvation = -28663.651393 eV Core-core repulsion = 24684.933854 eV Total energy + Delta-G solvation = -3978.717539 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.25327 -40.21071 -38.47808 -35.78319 -35.00357 -34.35891 -33.09291 -32.24789 -32.01378 -29.98233 -29.06896 -28.05750 -27.30286 -25.45812 -23.80732 -23.48568 -22.45893 -21.30044 -20.91794 -19.98486 -19.18201 -18.12900 -17.27136 -16.72257 -16.68530 -16.38924 -16.08572 -15.32939 -15.07725 -14.69812 -14.57655 -14.32961 -14.09246 -13.81091 -13.69940 -13.52810 -13.28463 -13.07073 -12.81964 -12.56090 -12.14639 -11.95419 -11.81372 -11.55081 -11.28298 -11.21630 -11.06257 -10.87546 -10.82461 -10.54167 -10.49341 -10.13968 -10.05208 -9.69813 -9.57561 -9.22550 -9.18604 -8.36874 -8.25702 -7.91793 -7.56021 -5.97792 -4.02383 0.98708 1.57488 1.64190 2.18766 2.43702 2.72489 3.27917 3.36074 3.40761 3.44790 3.80191 4.06723 4.18142 4.33948 4.42469 4.54224 4.62027 4.65655 4.89004 4.90653 5.07679 5.20394 5.22179 5.28232 5.36019 5.40589 5.44534 5.54415 5.70261 5.77706 5.89530 5.99298 6.15858 6.18035 6.39251 6.44556 6.51222 6.65413 6.80014 6.81974 6.86970 6.97443 7.29923 7.42690 7.57230 7.72493 7.99985 8.29371 8.45468 8.61851 8.97941 9.29556 9.62510 11.10120 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009857 B = 0.003004 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2839.806266 B = 9319.253690 C =10539.286698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.171 4.171 3 C 0.138 3.862 4 N -0.602 5.602 5 C 0.262 3.738 6 C -0.527 4.527 7 H 0.056 0.944 8 C 0.062 3.938 9 N -0.894 5.894 10 Si 0.897 3.103 11 H -0.278 1.278 12 H -0.286 1.286 13 H -0.277 1.277 14 C 0.696 3.304 15 O -0.559 6.559 16 N -0.697 5.697 17 C 0.185 3.815 18 C -0.151 4.151 19 C -0.099 4.099 20 C -0.133 4.133 21 C 0.007 3.993 22 C 0.029 3.971 23 C -0.044 4.044 24 N -0.297 5.297 25 C 0.082 3.918 26 N -0.084 5.084 27 N -0.244 5.244 28 C -0.092 4.092 29 H 0.099 0.901 30 H 0.094 0.906 31 H 0.105 0.895 32 H 0.091 0.909 33 H 0.066 0.934 34 H 0.035 0.965 35 H 0.046 0.954 36 H 0.263 0.737 37 H 0.402 0.598 38 H 0.124 0.876 39 H 0.126 0.874 40 H 0.119 0.881 41 H 0.193 0.807 42 H 0.091 0.909 43 H 0.101 0.899 44 H 0.098 0.902 45 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.955 -15.114 -14.105 24.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.191 4.191 3 C 0.013 3.987 4 N -0.337 5.337 5 C 0.143 3.857 6 C -0.566 4.566 7 H 0.074 0.926 8 C -0.140 4.140 9 N -0.533 5.533 10 Si 0.725 3.275 11 H -0.203 1.203 12 H -0.212 1.212 13 H -0.202 1.202 14 C 0.398 3.602 15 O -0.434 6.434 16 N -0.346 5.346 17 C 0.089 3.911 18 C -0.173 4.173 19 C -0.118 4.118 20 C -0.154 4.154 21 C 0.004 3.996 22 C -0.107 4.107 23 C -0.195 4.195 24 N -0.090 5.090 25 C -0.059 4.059 26 N -0.064 5.064 27 N -0.111 5.111 28 C -0.114 4.114 29 H 0.118 0.882 30 H 0.112 0.888 31 H 0.123 0.877 32 H 0.109 0.891 33 H 0.084 0.916 34 H 0.053 0.947 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.238 0.762 38 H 0.142 0.858 39 H 0.144 0.856 40 H 0.137 0.863 41 H 0.210 0.790 42 H 0.109 0.891 43 H 0.120 0.880 44 H 0.116 0.884 45 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 13.597 -15.295 -11.747 23.597 hybrid contribution 0.608 1.240 -1.181 1.817 sum 14.205 -14.055 -12.929 23.801 Atomic orbital electron populations 1.23817 0.95803 1.01784 1.00317 1.23459 0.96505 0.98998 1.00098 1.20524 0.93199 0.95687 0.89257 1.47592 1.08613 1.63293 1.14156 1.19236 0.95257 0.93538 0.77689 1.21416 1.40515 0.93407 1.01271 0.92564 1.24918 0.95111 0.98673 0.95321 1.69924 1.41980 1.36195 1.05164 0.86573 0.78818 0.85023 0.77075 1.20321 1.21202 1.20218 1.15966 0.83239 0.78652 0.82325 1.90955 1.52437 1.61097 1.38930 1.43038 1.16135 1.62807 1.12658 1.17449 0.85758 0.93416 0.94520 1.20915 0.95452 1.03320 0.97615 1.20681 0.94833 0.97812 0.98437 1.20859 0.99905 1.02129 0.92480 1.17458 0.94111 0.97615 0.90437 1.20435 0.92130 1.03350 0.94819 1.23456 1.00845 1.04104 0.91065 1.47167 1.13246 1.37206 1.11356 1.22256 0.84014 0.97818 1.01813 1.78315 0.90226 1.16863 1.20989 1.75424 1.22761 1.10877 1.02054 1.21336 0.95249 0.94815 0.99985 0.88244 0.88752 0.87724 0.89051 0.91595 0.94740 0.93616 0.92684 0.76154 0.85821 0.85631 0.86255 0.79038 0.89058 0.88009 0.88362 0.83338 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.35 14.32 29.01 0.42 -1.93 16 2 C -0.17 -2.47 9.85 -36.02 -0.35 -2.82 16 3 C 0.14 2.24 5.66 -5.19 -0.03 2.21 16 4 N -0.60 -13.07 2.44 -182.18 -0.44 -13.52 16 5 C 0.26 7.02 5.16 -5.19 -0.03 6.99 16 6 C -0.53 -15.24 9.39 -34.44 -0.32 -15.56 16 7 H 0.06 1.62 7.81 -52.48 -0.41 1.21 16 8 C 0.06 1.81 5.46 -17.82 -0.10 1.71 16 9 N -0.89 -27.15 13.29 55.43 0.74 -26.41 16 10 Si 0.90 22.38 29.54 -169.99 -5.02 17.36 16 11 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 12 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 13 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 14 C 0.70 15.34 8.01 -86.92 -0.70 14.64 16 15 O -0.56 -14.97 13.62 5.29 0.07 -14.90 16 16 N -0.70 -11.67 5.22 -14.25 -0.07 -11.74 16 17 C 0.19 2.99 6.27 -83.73 -0.53 2.47 16 18 C -0.15 -1.89 9.95 -39.33 -0.39 -2.28 16 19 C -0.10 -1.05 10.03 -39.66 -0.40 -1.45 16 20 C -0.13 -1.51 9.58 -39.23 -0.38 -1.89 16 21 C 0.01 0.10 5.87 -104.92 -0.62 -0.52 16 22 C 0.03 0.45 6.98 -83.12 -0.58 -0.13 16 23 C -0.04 -0.46 11.00 -16.70 -0.18 -0.65 16 24 N -0.30 -3.20 3.73 -67.78 -0.25 -3.45 16 25 C 0.08 0.37 11.38 59.85 0.68 1.05 16 26 N -0.08 -1.32 13.14 60.35 0.79 -0.53 16 27 N -0.24 -4.47 12.17 33.06 0.40 -4.07 16 28 C -0.09 -1.67 8.31 -39.07 -0.32 -1.99 16 29 H 0.10 1.27 7.84 -52.49 -0.41 0.86 16 30 H 0.09 1.08 8.06 -52.49 -0.42 0.65 16 31 H 0.10 1.48 8.06 -52.48 -0.42 1.06 16 32 H 0.09 1.54 7.72 -51.93 -0.40 1.14 16 33 H 0.07 0.87 6.29 -51.93 -0.33 0.54 16 34 H 0.03 0.93 8.07 -51.93 -0.42 0.52 16 35 H 0.05 1.40 7.42 -51.93 -0.39 1.01 16 36 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 37 H 0.40 5.29 6.51 -40.82 -0.27 5.03 16 38 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 39 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 40 H 0.12 0.93 7.13 -52.48 -0.37 0.55 16 41 H 0.19 1.10 7.43 -52.49 -0.39 0.71 16 42 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 43 H 0.10 0.39 8.14 -51.92 -0.42 -0.03 16 44 H 0.10 0.14 8.14 -51.93 -0.42 -0.28 16 45 H 0.15 3.25 6.27 -52.49 -0.33 2.92 16 LS Contribution 389.14 15.07 5.86 5.86 Total: -1.00 -39.12 389.14 -7.56 -46.68 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -5.81 Total: 4.86 kcal Atomic # 6 Polarization: 3.68 SS G_CDS: -3.83 Total: -0.15 kcal Atomic # 7 Polarization: -60.87 SS G_CDS: 1.16 Total: -59.71 kcal Atomic # 8 Polarization: -14.97 SS G_CDS: 0.07 Total: -14.90 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -39.12 -7.56 -46.68 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597118620.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 182.789 kcal (2) G-P(sol) polarization free energy of solvation -39.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 143.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds