Wall clock time and date at job start Sat Apr 11 2020 06:22:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.50704 * 120.00254 * 2 1 4 4 N 1.46502 * 109.46983 * 124.99456 * 3 2 1 5 5 C 1.46496 * 120.00139 * 270.00035 * 4 3 2 6 6 C 1.50703 * 109.47131 * 270.00387 * 5 4 3 7 7 H 1.08003 * 120.00166 * 359.97438 * 6 5 4 8 8 C 1.37883 * 119.99919 * 179.97438 * 6 5 4 9 9 N 1.31513 * 120.00104 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 119.99898 * 180.02562 * 8 6 5 11 11 H 1.48492 * 109.47182 * 59.99906 * 10 8 6 12 12 H 1.48501 * 109.47131 * 180.02562 * 10 8 6 13 13 H 1.48497 * 109.46967 * 300.00082 * 10 8 6 14 14 C 1.34771 * 119.99687 * 90.00484 * 4 3 2 15 15 O 1.21590 * 119.99726 * 179.97438 * 14 4 3 16 16 N 1.34774 * 120.00135 * 359.97438 * 14 4 3 17 17 C 1.39963 * 120.00061 * 185.29844 * 16 14 4 18 18 C 1.38966 * 120.01026 * 213.23661 * 17 16 14 19 19 C 1.38176 * 120.16505 * 180.02562 * 18 17 16 20 20 C 1.38092 * 120.19082 * 0.02562 * 19 18 17 21 21 C 1.39328 * 120.02338 * 359.95073 * 20 19 18 22 22 C 1.48452 * 120.08474 * 180.02562 * 21 20 19 23 23 C 1.36483 * 126.90302 * 4.99586 * 22 21 20 24 24 N 1.35207 * 106.04342 * 179.97438 * 23 22 21 25 25 C 1.46505 * 125.74909 * 180.02562 * 24 23 22 26 26 N 1.28647 * 108.50113 * 0.02562 * 24 23 22 27 27 N 1.28615 * 110.47950 * 359.97438 * 26 24 23 28 28 C 1.38643 * 120.00901 * 33.47186 * 17 16 14 29 29 H 1.07998 * 119.99510 * 0.02562 * 1 2 3 30 30 H 1.08002 * 119.99909 * 179.97438 * 1 2 3 31 31 H 1.08003 * 120.00383 * 179.97438 * 2 1 3 32 32 H 1.09000 * 109.46702 * 4.99869 * 3 2 1 33 33 H 1.08996 * 109.46915 * 244.99644 * 3 2 1 34 34 H 1.09004 * 109.47456 * 30.00331 * 5 4 3 35 35 H 1.08997 * 109.47261 * 150.00340 * 5 4 3 36 36 H 0.96999 * 119.99954 * 180.02562 * 9 8 6 37 37 H 0.97001 * 120.00368 * 5.30015 * 16 14 4 38 38 H 1.07995 * 119.91496 * 0.02562 * 18 17 16 39 39 H 1.07997 * 119.89972 * 179.97438 * 19 18 17 40 40 H 1.08006 * 119.98216 * 179.97438 * 20 19 18 41 41 H 1.08001 * 126.98178 * 0.02562 * 23 22 21 42 42 H 1.09004 * 109.47175 * 90.00492 * 25 24 23 43 43 H 1.09010 * 109.47007 * 209.99888 * 25 24 23 44 44 H 1.08993 * 109.47423 * 329.99653 * 25 24 23 45 45 H 1.07998 * 120.09570 * 359.97244 * 28 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 7 2.9938 1.3319 1.1315 5 6 2.5588 1.8649 2.4249 6 6 2.8442 3.3437 2.4804 7 1 3.3040 3.8370 1.6368 8 6 2.5183 4.0668 3.6082 9 7 1.9588 3.4661 4.6357 10 14 2.8714 5.8999 3.6767 11 1 2.1357 6.5868 2.5850 12 1 2.4306 6.4402 4.9878 13 1 4.3292 6.1296 3.5121 14 6 4.2497 0.8662 0.9825 15 8 5.0218 0.8888 1.9215 16 7 4.6497 0.3753 -0.2072 17 6 5.9150 -0.2094 -0.3333 18 6 6.6189 -0.0928 -1.5258 19 6 7.8681 -0.6693 -1.6540 20 6 8.4236 -1.3647 -0.5982 21 6 7.7251 -1.4861 0.6012 22 6 8.3212 -2.2329 1.7372 23 6 9.5735 -2.7725 1.7963 24 7 9.6738 -3.3515 3.0140 25 6 10.8473 -4.0602 3.5307 26 7 8.5653 -3.1751 3.6425 27 7 7.7360 -2.5137 2.9152 28 6 6.4645 -0.9093 0.7299 29 1 -0.5399 0.9353 -0.0004 30 1 -0.5400 -0.9353 -0.0004 31 1 1.8501 -0.9353 0.0004 32 1 1.3586 2.1316 0.0895 33 1 2.6214 1.4025 -0.9313 34 1 1.4887 1.6967 2.5460 35 1 3.0988 1.3604 3.2260 36 1 1.7292 3.9749 5.4289 37 1 4.0607 0.4274 -0.9762 38 1 6.1884 0.4497 -2.3545 39 1 8.4111 -0.5764 -2.5829 40 1 9.4001 -1.8143 -0.7022 41 1 10.3309 -2.7424 1.0270 42 1 11.4988 -3.3557 4.0478 43 1 10.5263 -4.8358 4.2262 44 1 11.3898 -4.5166 2.7028 45 1 5.9177 -1.0039 1.6564 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597118620.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:11 Heat of formation + Delta-G solvation = 107.968482 kcal Electronic energy + Delta-G solvation = -28664.871583 eV Core-core repulsion = 24684.933854 eV Total energy + Delta-G solvation = -3979.937729 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -44.21026 -41.68969 -39.72377 -37.34473 -36.17042 -35.54524 -34.96986 -33.75196 -33.20798 -31.10937 -30.29201 -29.11124 -28.70926 -26.97343 -25.26468 -24.82823 -23.71258 -22.39422 -22.01537 -21.27304 -20.61517 -19.34051 -18.64404 -18.52079 -17.82973 -17.57778 -17.11596 -16.79224 -16.55549 -16.14190 -15.83937 -15.74203 -15.49800 -14.86337 -14.70208 -14.56465 -14.31324 -14.25523 -14.10522 -13.79231 -13.65977 -13.34401 -13.13711 -12.91231 -12.89975 -12.61782 -12.53171 -12.30276 -12.25885 -12.20506 -11.83038 -11.75027 -11.60391 -11.09849 -10.96722 -10.69805 -10.64659 -10.37344 -9.59945 -9.32287 -8.89170 -8.21713 -6.37223 0.03454 0.50404 0.67581 1.23799 1.34859 1.40394 1.47495 1.55339 1.66815 1.84602 2.21944 2.39144 3.02090 3.05556 3.08082 3.24159 3.68777 3.91467 3.99846 4.09324 4.17952 4.18671 4.30906 4.31765 4.34552 4.38267 4.57968 4.63658 4.67935 4.76320 4.83486 4.85187 4.95503 5.01686 5.15963 5.19982 5.42956 5.47949 5.51386 5.62385 5.65253 5.67662 5.72213 5.73266 5.89864 6.05268 6.09180 6.16391 6.71273 7.04467 7.29755 7.45284 7.64056 8.85062 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009857 B = 0.003004 C = 0.002656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2839.806266 B = 9319.253690 C =10539.286698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.189 4.189 3 C 0.135 3.865 4 N -0.609 5.609 5 C 0.282 3.718 6 C -0.543 4.543 7 H 0.054 0.946 8 C 0.006 3.994 9 N -0.929 5.929 10 Si 0.970 3.030 11 H -0.256 1.256 12 H -0.278 1.278 13 H -0.280 1.280 14 C 0.692 3.308 15 O -0.620 6.620 16 N -0.676 5.676 17 C 0.151 3.849 18 C -0.141 4.141 19 C -0.085 4.085 20 C -0.115 4.115 21 C -0.009 4.009 22 C -0.010 4.010 23 C -0.009 4.009 24 N -0.285 5.285 25 C 0.068 3.932 26 N -0.127 5.127 27 N -0.315 5.315 28 C -0.133 4.133 29 H 0.104 0.896 30 H 0.116 0.884 31 H 0.105 0.895 32 H 0.086 0.914 33 H 0.101 0.899 34 H 0.026 0.974 35 H -0.009 1.009 36 H 0.267 0.733 37 H 0.419 0.581 38 H 0.155 0.845 39 H 0.177 0.823 40 H 0.169 0.831 41 H 0.253 0.747 42 H 0.107 0.893 43 H 0.104 0.896 44 H 0.142 0.858 45 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.985 -15.103 -18.454 29.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.209 4.209 3 C 0.013 3.987 4 N -0.342 5.342 5 C 0.161 3.839 6 C -0.581 4.581 7 H 0.072 0.928 8 C -0.192 4.192 9 N -0.569 5.569 10 Si 0.793 3.207 11 H -0.180 1.180 12 H -0.203 1.203 13 H -0.206 1.206 14 C 0.394 3.606 15 O -0.499 6.499 16 N -0.327 5.327 17 C 0.056 3.944 18 C -0.162 4.162 19 C -0.103 4.103 20 C -0.135 4.135 21 C -0.011 4.011 22 C -0.149 4.149 23 C -0.161 4.161 24 N -0.078 5.078 25 C -0.071 4.071 26 N -0.106 5.106 27 N -0.180 5.180 28 C -0.155 4.155 29 H 0.122 0.878 30 H 0.134 0.866 31 H 0.123 0.877 32 H 0.104 0.896 33 H 0.119 0.881 34 H 0.044 0.956 35 H 0.009 0.991 36 H 0.076 0.924 37 H 0.259 0.741 38 H 0.173 0.827 39 H 0.194 0.806 40 H 0.187 0.813 41 H 0.269 0.731 42 H 0.126 0.874 43 H 0.123 0.877 44 H 0.160 0.840 45 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 16.613 -15.334 -16.152 27.785 hybrid contribution -0.191 1.079 0.134 1.104 sum 16.422 -14.256 -16.018 27.009 Atomic orbital electron populations 1.24058 0.95309 1.03045 0.97583 1.23309 0.96999 0.98037 1.02523 1.20792 0.92752 0.96649 0.88514 1.47420 1.09647 1.63176 1.13981 1.18605 0.93684 0.92575 0.79084 1.21681 1.40608 0.94293 1.01550 0.92775 1.25893 0.94638 1.03975 0.94742 1.70062 1.42772 1.38243 1.05780 0.85445 0.78370 0.78807 0.78033 1.18009 1.20263 1.20620 1.16165 0.82740 0.78477 0.83190 1.90915 1.54182 1.63369 1.41430 1.42621 1.17074 1.61880 1.11110 1.17761 0.85924 0.94770 0.95940 1.21304 0.95873 1.02731 0.96332 1.21311 0.93776 0.95342 0.99868 1.21399 1.01081 1.00589 0.90380 1.17752 0.93366 0.97702 0.92315 1.20886 0.94283 1.05262 0.94422 1.24208 0.99750 1.00746 0.91438 1.47713 1.13150 1.35747 1.11162 1.22837 0.82234 0.98069 1.03920 1.78188 0.92025 1.18408 1.21987 1.75355 1.25326 1.13041 1.04313 1.21071 0.97252 0.98366 0.98795 0.87787 0.86630 0.87688 0.89554 0.88088 0.95568 0.99086 0.92408 0.74106 0.82708 0.80554 0.81342 0.73134 0.87441 0.87741 0.83969 0.89269 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.13 14.32 67.78 0.97 -3.16 16 2 C -0.19 -5.53 9.85 25.65 0.25 -5.28 16 3 C 0.13 4.49 5.66 85.63 0.48 4.97 16 4 N -0.61 -28.27 2.44 -848.57 -2.07 -30.34 16 5 C 0.28 16.36 5.16 85.63 0.44 16.80 16 6 C -0.54 -32.91 9.39 25.60 0.24 -32.67 16 7 H 0.05 3.23 7.81 -2.91 -0.02 3.20 16 8 C 0.01 0.39 5.46 84.66 0.46 0.85 16 9 N -0.93 -58.91 13.29 21.45 0.28 -58.62 16 10 Si 0.97 46.85 29.54 68.60 2.03 48.88 16 11 H -0.26 -11.42 7.11 99.48 0.71 -10.71 16 12 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 13 H -0.28 -13.66 7.11 99.48 0.71 -12.95 16 14 C 0.69 33.08 8.01 179.06 1.43 34.51 16 15 O -0.62 -36.93 13.62 -4.00 -0.05 -36.98 16 16 N -0.68 -23.69 5.22 -317.26 -1.66 -25.35 16 17 C 0.15 5.03 6.27 38.11 0.24 5.27 16 18 C -0.14 -3.12 9.95 22.43 0.22 -2.90 16 19 C -0.08 -1.38 10.03 22.22 0.22 -1.15 16 20 C -0.11 -2.14 9.58 22.50 0.22 -1.93 16 21 C -0.01 -0.27 5.87 -20.06 -0.12 -0.39 16 22 C -0.01 -0.32 6.98 41.05 0.29 -0.04 16 23 C -0.01 -0.17 11.00 83.76 0.92 0.75 16 24 N -0.28 -5.82 3.73 -368.34 -1.37 -7.19 16 25 C 0.07 0.43 11.38 127.77 1.45 1.88 16 26 N -0.13 -4.24 13.14 37.02 0.49 -3.76 16 27 N -0.31 -12.69 12.17 -49.31 -0.60 -13.29 16 28 C -0.13 -5.24 8.31 22.60 0.19 -5.06 16 29 H 0.10 2.56 7.84 -2.91 -0.02 2.54 16 30 H 0.12 2.46 8.06 -2.91 -0.02 2.44 16 31 H 0.11 3.06 8.06 -2.91 -0.02 3.04 16 32 H 0.09 2.95 7.72 -2.39 -0.02 2.93 16 33 H 0.10 2.57 6.29 -2.39 -0.02 2.55 16 34 H 0.03 1.53 8.07 -2.39 -0.02 1.51 16 35 H -0.01 -0.61 7.42 -2.39 -0.02 -0.63 16 36 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 37 H 0.42 10.99 6.51 -92.71 -0.60 10.38 16 38 H 0.16 2.40 8.06 -2.91 -0.02 2.38 16 39 H 0.18 1.21 8.06 -2.91 -0.02 1.18 16 40 H 0.17 1.43 7.13 -2.91 -0.02 1.41 16 41 H 0.25 1.24 7.43 -2.91 -0.02 1.22 16 42 H 0.11 0.40 8.14 -2.38 -0.02 0.39 16 43 H 0.10 0.64 8.14 -2.38 -0.02 0.62 16 44 H 0.14 -0.32 8.14 -2.39 -0.02 -0.33 16 45 H 0.09 4.55 6.27 -2.91 -0.02 4.53 16 Total: -1.00 -100.97 389.14 5.38 -95.59 By element: Atomic # 1 Polarization: 18.17 SS G_CDS: 0.42 Total: 18.59 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: 7.92 Total: 12.47 kcal Atomic # 7 Polarization: -133.62 SS G_CDS: -4.93 Total: -138.55 kcal Atomic # 8 Polarization: -36.93 SS G_CDS: -0.05 Total: -36.98 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 2.03 Total: 48.88 kcal Total: -100.97 5.38 -95.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597118620.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 203.562 kcal (2) G-P(sol) polarization free energy of solvation -100.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds