Wall clock time and date at job start Sat Apr 11 2020 06:22:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34585 * 125.84702 * 2 1 4 4 C 1.36718 * 107.59446 * 179.97438 * 3 2 1 5 5 C 1.48032 * 126.26856 * 179.97438 * 4 3 2 6 6 N 1.32630 * 119.84273 * 317.04199 * 5 4 3 7 7 C 1.31753 * 121.75672 * 179.75797 * 6 5 4 8 8 C 1.38454 * 121.23671 * 0.52204 * 7 6 5 9 9 C 1.38367 * 119.53813 * 359.74323 * 8 7 6 10 10 C 1.39924 * 118.37911 * 0.02562 * 9 8 7 11 11 C 1.47540 * 120.61283 * 179.97438 * 10 9 8 12 12 O 1.21589 * 119.99675 * 122.80884 * 11 10 9 13 13 N 1.34779 * 119.99628 * 302.81014 * 11 10 9 14 14 C 1.46961 * 120.59552 * 4.19826 * 13 11 10 15 15 C 1.53810 * 108.39648 * 124.75969 * 14 13 11 16 16 N 1.46953 * 108.58314 * 49.63587 * 15 14 13 17 17 C 1.36942 * 120.59635 * 124.66645 * 16 15 14 18 18 H 1.08005 * 119.99861 * 210.85585 * 17 16 15 19 19 C 1.38813 * 119.99787 * 30.85886 * 17 16 15 20 20 N 1.31612 * 120.00074 * 10.52388 * 19 17 16 21 21 Si 1.86795 * 119.99751 * 190.52595 * 19 17 16 22 22 H 1.48503 * 109.47408 * 60.00147 * 21 19 17 23 23 H 1.48503 * 109.46979 * 179.97438 * 21 19 17 24 24 H 1.48502 * 109.47437 * 300.00106 * 21 19 17 25 25 C 1.46972 * 118.81206 * 304.64794 * 16 15 14 26 26 C 1.46957 * 120.58874 * 184.48022 * 13 11 10 27 27 C 1.41041 * 107.45683 * 0.23905 * 4 3 2 28 28 N 1.30592 * 108.04236 * 359.59557 * 27 4 3 29 29 H 1.09003 * 109.47450 * 89.99825 * 1 2 3 30 30 H 1.09006 * 109.47256 * 209.99757 * 1 2 3 31 31 H 1.08999 * 109.46813 * 329.99625 * 1 2 3 32 32 H 1.08001 * 126.20607 * 0.02562 * 3 2 1 33 33 H 1.08001 * 119.38011 * 180.26657 * 7 6 5 34 34 H 1.07996 * 120.23006 * 179.72233 * 8 7 6 35 35 H 1.07994 * 120.80870 * 180.02562 * 9 8 7 36 36 H 1.09001 * 109.61191 * 244.53971 * 14 13 11 37 37 H 1.09001 * 109.61358 * 5.05137 * 14 13 11 38 38 H 1.09003 * 109.73962 * 289.84375 * 15 14 13 39 39 H 1.09002 * 109.53349 * 169.30319 * 15 14 13 40 40 H 0.97002 * 120.00562 * 180.02562 * 20 19 17 41 41 H 1.08995 * 109.61095 * 295.47946 * 25 16 15 42 42 H 1.09001 * 109.60798 * 174.96538 * 25 16 15 43 43 H 1.09003 * 109.61289 * 354.94206 * 26 13 11 44 44 H 1.08995 * 109.61577 * 115.46153 * 26 13 11 45 45 H 1.07996 * 125.97423 * 179.74109 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2532 1.0909 0.0000 4 6 3.5515 0.6627 0.0006 5 6 4.7570 1.5219 0.0003 6 7 4.8060 2.5900 -0.7844 7 6 5.8577 3.3831 -0.8113 8 6 6.9687 3.1292 -0.0250 9 6 6.9759 2.0257 0.8097 10 6 5.8478 1.1981 0.8277 11 6 5.8028 0.0080 1.6987 12 8 4.9117 -0.1130 2.5170 13 7 6.7496 -0.9447 1.5872 14 6 7.8827 -0.7693 0.6680 15 6 9.1863 -0.9303 1.4683 16 7 9.1008 -2.1658 2.2593 17 6 10.0626 -3.1339 2.1460 18 1 9.8033 -4.1724 2.2907 19 6 11.3709 -2.7806 1.8454 20 7 11.7339 -1.5158 1.8730 21 14 12.6163 -4.1003 1.4018 22 1 12.1551 -4.8300 0.1934 23 1 13.9310 -3.4674 1.1255 24 1 12.7527 -5.0526 2.5331 25 6 7.9645 -2.3437 3.1744 26 6 6.6638 -2.1803 2.3782 27 6 3.5320 -0.7475 -0.0047 28 7 2.2848 -1.1348 0.0006 29 1 -0.3634 0.0000 -1.0277 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8900 0.5139 32 1 1.9204 2.1184 0.0004 33 1 5.8548 4.2452 -1.4618 34 1 7.8238 3.7877 -0.0632 35 1 7.8313 1.8084 1.4320 36 1 7.8370 -1.5238 -0.1173 37 1 7.8440 0.2260 0.2252 38 1 9.3169 -0.0776 2.1346 39 1 10.0303 -0.9934 0.7813 40 1 12.6481 -1.2688 1.6626 41 1 8.0081 -1.5918 3.9622 42 1 8.0016 -3.3404 3.6140 43 1 5.8200 -2.1171 3.0652 44 1 6.5333 -3.0330 1.7119 45 1 4.3971 -1.3940 -0.0096 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597274878.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:17 Heat of formation + Delta-G solvation = 125.838247 kcal Electronic energy + Delta-G solvation = -30033.504962 eV Core-core repulsion = 26054.342124 eV Total energy + Delta-G solvation = -3979.162837 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.39807 -40.29167 -38.88945 -36.73973 -33.98127 -33.66809 -32.79298 -32.04214 -31.10346 -30.09840 -29.44877 -27.13600 -26.82437 -24.65753 -23.59409 -23.33713 -22.69748 -21.07468 -20.76720 -20.46497 -18.91275 -17.59302 -17.38644 -16.51594 -16.18261 -15.90636 -15.71761 -15.49407 -14.80128 -14.67579 -14.29715 -14.13199 -13.93803 -13.74530 -13.49513 -13.38545 -13.35505 -13.02367 -12.96759 -12.80125 -12.61071 -12.34560 -12.11167 -11.69796 -11.29329 -10.87378 -10.83830 -10.75632 -10.53900 -10.25624 -10.15538 -9.95313 -9.86862 -9.67816 -9.58426 -9.48799 -9.12246 -8.61779 -8.25782 -8.14829 -6.70006 -5.87627 -3.36981 0.78137 1.12802 1.88652 2.39577 2.76123 2.96655 3.33463 3.36897 3.38972 3.41182 3.81964 4.17089 4.40615 4.42413 4.70786 4.74853 4.83122 4.87836 4.91770 5.06562 5.10329 5.17555 5.27882 5.32295 5.43899 5.49105 5.64038 5.77940 5.84643 5.85924 5.93989 6.06099 6.08975 6.13823 6.20683 6.32921 6.42334 6.47471 6.60073 6.77460 6.86461 6.92009 7.18981 7.46367 7.61349 7.68692 7.83301 7.91395 8.35880 8.51512 9.10711 9.71208 10.29015 11.19564 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015487 B = 0.003272 C = 0.002884 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1807.533214 B = 8554.480360 C = 9706.729135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.375 5.375 3 C 0.100 3.900 4 C -0.197 4.197 5 C 0.250 3.750 6 N -0.486 5.486 7 C 0.116 3.884 8 C -0.183 4.183 9 C -0.039 4.039 10 C -0.160 4.160 11 C 0.559 3.441 12 O -0.538 6.538 13 N -0.590 5.590 14 C 0.071 3.929 15 C 0.160 3.840 16 N -0.591 5.591 17 C -0.254 4.254 18 H 0.067 0.933 19 C 0.005 3.995 20 N -0.906 5.906 21 Si 0.907 3.093 22 H -0.283 1.283 23 H -0.290 1.290 24 H -0.282 1.282 25 C 0.132 3.868 26 C 0.096 3.904 27 C 0.091 3.909 28 N -0.294 5.294 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.178 0.822 33 H 0.159 0.841 34 H 0.141 0.859 35 H 0.146 0.854 36 H 0.064 0.936 37 H 0.074 0.926 38 H 0.022 0.978 39 H 0.105 0.895 40 H 0.256 0.744 41 H 0.024 0.976 42 H 0.067 0.933 43 H 0.083 0.917 44 H 0.064 0.936 45 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.306 9.496 -6.146 19.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.155 5.155 3 C -0.049 4.049 4 C -0.209 4.209 5 C 0.112 3.888 6 N -0.195 5.195 7 C -0.042 4.042 8 C -0.203 4.203 9 C -0.065 4.065 10 C -0.166 4.166 11 C 0.346 3.654 12 O -0.417 6.417 13 N -0.322 5.322 14 C -0.053 4.053 15 C 0.033 3.967 16 N -0.314 5.314 17 C -0.384 4.384 18 H 0.084 0.916 19 C -0.194 4.194 20 N -0.551 5.551 21 Si 0.737 3.263 22 H -0.209 1.209 23 H -0.216 1.216 24 H -0.208 1.208 25 C 0.005 3.995 26 C -0.028 4.028 27 C -0.097 4.097 28 N -0.114 5.114 29 H 0.093 0.907 30 H 0.108 0.892 31 H 0.105 0.895 32 H 0.195 0.805 33 H 0.176 0.824 34 H 0.159 0.841 35 H 0.163 0.837 36 H 0.082 0.918 37 H 0.092 0.908 38 H 0.040 0.960 39 H 0.123 0.877 40 H 0.066 0.934 41 H 0.042 0.958 42 H 0.085 0.915 43 H 0.101 0.899 44 H 0.083 0.917 45 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -18.273 8.638 -6.260 21.159 hybrid contribution 2.237 0.029 0.290 2.256 sum -16.035 8.667 -5.970 19.181 Atomic orbital electron populations 1.21865 0.74039 1.04613 1.03355 1.48295 1.06778 1.03829 1.56612 1.22443 0.90130 0.93296 0.99039 1.18315 0.91130 0.92365 1.19094 1.18818 0.90270 0.90273 0.89392 1.67768 1.27458 1.04374 1.19867 1.22824 0.88465 0.97019 0.95931 1.22090 1.00579 0.98880 0.98747 1.21813 0.96349 0.92470 0.95872 1.20872 0.96144 0.98802 1.00738 1.17961 0.81848 0.82533 0.83087 1.90767 1.36034 1.78172 1.36685 1.48037 1.23675 1.18383 1.42084 1.23014 0.88367 1.00957 0.92970 1.21295 0.93034 0.88149 0.94230 1.43944 1.24258 1.19046 1.44116 1.19175 0.87233 0.87750 1.44237 0.91580 1.25158 0.96905 0.96234 1.01077 1.69911 1.17739 1.15239 1.52183 0.86297 0.80453 0.80966 0.78578 1.20898 1.21564 1.20820 1.21310 0.86835 0.99633 0.91737 1.22250 1.00479 0.84856 0.95224 1.23822 0.95110 0.93524 0.97238 1.77234 1.01501 1.07722 1.24965 0.90658 0.89167 0.89453 0.80461 0.82410 0.84114 0.83652 0.91766 0.90784 0.95994 0.87743 0.93386 0.95798 0.91474 0.89859 0.91746 0.80440 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.72 11.45 59.85 0.69 1.41 16 2 N -0.37 -4.64 3.99 -67.88 -0.27 -4.92 16 3 C 0.10 1.26 11.43 -16.89 -0.19 1.06 16 4 C -0.20 -2.99 5.11 -105.37 -0.54 -3.52 16 5 C 0.25 3.80 6.67 -82.58 -0.55 3.25 16 6 N -0.49 -6.58 10.28 -9.50 -0.10 -6.68 16 7 C 0.12 1.26 11.16 -17.51 -0.20 1.06 16 8 C -0.18 -1.98 10.09 -39.45 -0.40 -2.38 16 9 C -0.04 -0.53 7.56 -38.90 -0.29 -0.82 16 10 C -0.16 -2.52 4.93 -104.55 -0.51 -3.04 16 11 C 0.56 10.08 5.13 -12.47 -0.06 10.02 16 12 O -0.54 -11.11 15.33 5.29 0.08 -11.03 16 13 N -0.59 -10.64 2.94 -173.45 -0.51 -11.15 16 14 C 0.07 1.27 6.14 -3.37 -0.02 1.25 16 15 C 0.16 3.51 5.48 -3.37 -0.02 3.50 16 16 N -0.59 -14.11 2.96 -171.76 -0.51 -14.62 16 17 C -0.25 -6.65 9.59 -15.06 -0.14 -6.79 16 18 H 0.07 1.70 7.85 -52.48 -0.41 1.28 16 19 C 0.00 0.13 5.06 -17.43 -0.09 0.04 16 20 N -0.91 -24.87 10.96 55.49 0.61 -24.26 16 21 Si 0.91 20.88 29.57 -169.99 -5.03 15.85 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 23 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 25 C 0.13 2.73 6.67 -3.59 -0.02 2.70 16 26 C 0.10 1.75 6.60 -3.60 -0.02 1.72 16 27 C 0.09 1.46 10.14 -17.02 -0.17 1.28 16 28 N -0.29 -4.58 12.53 30.83 0.39 -4.19 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.18 1.67 8.06 -52.49 -0.42 1.25 16 33 H 0.16 1.15 8.06 -52.49 -0.42 0.73 16 34 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 35 H 0.15 1.98 7.57 -52.49 -0.40 1.58 16 36 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.07 1.17 4.40 -51.93 -0.23 0.94 16 38 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.10 2.56 5.96 -51.93 -0.31 2.25 16 40 H 0.26 6.83 8.31 -40.82 -0.34 6.49 16 41 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.07 1.33 7.93 -51.93 -0.41 0.91 16 43 H 0.08 1.50 6.99 -51.93 -0.36 1.14 16 44 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 45 H 0.18 2.84 7.44 -52.49 -0.39 2.45 16 LS Contribution 370.72 15.07 5.59 5.59 Total: -1.00 -33.43 370.72 -8.18 -41.61 By element: Atomic # 1 Polarization: 8.94 SS G_CDS: -5.88 Total: 3.06 kcal Atomic # 6 Polarization: 13.29 SS G_CDS: -2.56 Total: 10.73 kcal Atomic # 7 Polarization: -65.42 SS G_CDS: -0.39 Total: -65.81 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.08 Total: -11.03 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -5.03 Total: 15.85 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.43 -8.18 -41.61 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597274878.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.450 kcal (2) G-P(sol) polarization free energy of solvation -33.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.182 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 125.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds