Wall clock time and date at job start Sat Apr 11 2020 06:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46898 * 111.00176 * 2 1 4 4 C 1.46899 * 110.99627 * 123.95737 * 2 1 3 5 5 C 1.53007 * 109.46815 * 170.00063 * 4 2 1 6 6 C 1.53000 * 109.47041 * 180.02562 * 5 4 2 7 7 S 1.81394 * 109.46838 * 179.97438 * 6 5 4 8 8 O 1.42102 * 110.54862 * 68.37277 * 7 6 5 9 9 O 1.42103 * 110.54525 * 291.61737 * 7 6 5 10 10 N 1.65606 * 104.44882 * 179.97438 * 7 6 5 11 11 C 1.46503 * 120.00116 * 270.00115 * 10 7 6 12 12 C 1.50701 * 109.46930 * 264.99818 * 11 10 7 13 13 H 1.08001 * 119.99813 * 0.02562 * 12 11 10 14 14 C 1.37879 * 119.99911 * 179.97438 * 12 11 10 15 15 N 1.31515 * 119.99808 * 0.02562 * 14 12 11 16 16 Si 1.86794 * 119.99949 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47265 * 60.00667 * 16 14 12 18 18 H 1.48503 * 109.47322 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47536 * 300.00357 * 16 14 12 20 20 C 1.46503 * 120.00136 * 89.99608 * 10 7 6 21 21 C 1.50695 * 109.47313 * 265.00465 * 20 10 7 22 22 C 1.38678 * 120.41675 * 270.25293 * 21 20 10 23 23 C 1.38627 * 118.41930 * 180.24221 * 22 21 20 24 24 C 1.38232 * 119.16085 * 359.75178 * 23 22 21 25 25 N 1.31857 * 120.76541 * 359.97438 * 24 23 22 26 26 C 1.31889 * 121.72235 * 0.02562 * 25 24 23 27 27 H 1.09002 * 109.47345 * 296.04740 * 1 2 3 28 28 H 1.09005 * 109.46898 * 56.04506 * 1 2 3 29 29 H 1.09001 * 109.47627 * 176.04411 * 1 2 3 30 30 H 1.08993 * 109.47246 * 183.95715 * 3 2 1 31 31 H 1.08997 * 109.47130 * 303.95485 * 3 2 1 32 32 H 1.09001 * 109.46696 * 63.95272 * 3 2 1 33 33 H 1.09000 * 109.47494 * 50.00219 * 4 2 1 34 34 H 1.08995 * 109.47235 * 289.99656 * 4 2 1 35 35 H 1.08996 * 109.47382 * 59.99227 * 5 4 2 36 36 H 1.09002 * 109.47003 * 299.99407 * 5 4 2 37 37 H 1.08993 * 109.47385 * 59.99631 * 6 5 4 38 38 H 1.09002 * 109.46603 * 299.99486 * 6 5 4 39 39 H 1.09008 * 109.46620 * 24.99572 * 11 10 7 40 40 H 1.08997 * 109.47488 * 144.99479 * 11 10 7 41 41 H 0.97001 * 119.99938 * 179.97438 * 15 14 12 42 42 H 1.09001 * 109.46632 * 145.00274 * 20 10 7 43 43 H 1.08996 * 109.46728 * 25.00268 * 20 10 7 44 44 H 1.07994 * 120.78944 * 359.96926 * 22 21 20 45 45 H 1.07997 * 120.42083 * 179.72800 * 23 22 21 46 46 H 1.07999 * 119.61954 * 180.02562 * 24 23 22 47 47 H 1.08002 * 119.61237 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7661 1.1376 5 6 3.5044 -0.9554 0.9703 6 6 4.0526 -1.7538 2.1548 7 16 5.8415 -1.9790 1.9561 8 8 6.5191 -0.7378 2.0966 9 8 6.1169 -2.8443 0.8630 10 7 6.2995 -2.8469 3.2900 11 6 6.7082 -2.1503 4.5123 12 6 8.2086 -2.0107 4.5331 13 1 8.7986 -2.4014 3.7172 14 6 8.8280 -1.3833 5.5932 15 7 8.1094 -0.9072 6.5864 16 14 10.6878 -1.2109 5.6192 17 1 11.1294 -0.4326 4.4341 18 1 11.1022 -0.5047 6.8581 19 1 11.3104 -2.5586 5.5864 20 6 6.2958 -4.3113 3.2479 21 6 4.9936 -4.8266 3.8045 22 6 4.8661 -5.0944 5.1592 23 6 3.6512 -5.5719 5.6258 24 6 2.6130 -5.7589 4.7325 25 7 2.7686 -5.4883 3.4514 26 6 3.9099 -5.0328 2.9724 27 1 -0.3634 0.4513 0.9233 28 1 -0.3633 0.5740 -0.8525 29 1 -0.3634 -1.0252 -0.0709 30 1 3.0828 1.3432 -0.0709 31 1 1.5899 1.9163 -0.8524 32 1 1.7044 1.8723 0.9233 33 1 1.5089 -1.7407 1.1755 34 1 1.7975 -0.2249 2.0627 35 1 3.9909 0.0192 0.9322 36 1 3.7024 -1.4967 0.0451 37 1 3.5661 -2.7284 2.1923 38 1 3.8547 -1.2130 3.0802 39 1 6.2508 -1.1611 4.5370 40 1 6.3844 -2.7221 5.3820 41 1 8.5452 -0.4661 7.3324 42 1 7.1232 -4.6940 3.8455 43 1 6.4075 -4.6453 2.2164 44 1 5.6950 -4.9390 5.8338 45 1 3.5176 -5.7953 6.6740 46 1 1.6632 -6.1301 5.0881 47 1 3.9997 -4.8228 1.9169 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601292084.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:20 Heat of formation + Delta-G solvation = -29.960246 kcal Electronic energy + Delta-G solvation = -28645.047383 eV Core-core repulsion = 24762.279817 eV Total energy + Delta-G solvation = -3882.767567 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.08047 -37.93638 -36.58667 -36.08241 -35.31264 -33.54284 -32.92328 -32.11661 -31.21526 -27.80787 -27.53965 -27.33035 -25.43881 -23.59335 -23.08370 -22.58709 -21.62791 -20.94847 -18.27411 -17.16622 -17.02295 -16.61165 -16.31879 -16.08751 -15.91390 -15.51132 -15.18717 -15.01975 -14.75708 -14.70211 -14.25885 -13.98157 -13.51334 -13.34225 -12.90574 -12.74369 -12.59707 -12.49879 -12.31266 -12.20979 -12.00963 -11.80224 -11.73111 -11.67959 -11.65933 -11.48322 -11.24852 -11.09594 -10.83907 -10.71494 -10.59708 -10.26534 -10.06424 -9.84262 -9.66994 -9.39809 -8.95616 -8.57678 -8.47611 -8.15991 -6.10210 -4.13678 0.74055 1.15616 1.39132 3.25020 3.31812 3.35575 3.41181 3.72665 3.92518 4.35224 4.41590 4.47859 4.52134 4.78629 4.81335 4.91079 4.93659 4.98572 5.01136 5.11976 5.15444 5.18632 5.24428 5.27996 5.36888 5.41761 5.44773 5.53382 5.62852 5.65831 5.70639 5.78008 5.80049 5.88185 5.99563 6.10837 6.20077 6.26612 6.54115 6.77232 6.80026 6.81044 7.11226 7.29372 7.48166 7.87375 7.99888 8.15617 8.88693 9.51568 10.98369 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008786 B = 0.004390 C = 0.003301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3186.262455 B = 6376.736682 C = 8479.956739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.550 5.550 3 C 0.016 3.984 4 C 0.063 3.937 5 C -0.105 4.105 6 C -0.644 4.644 7 S 2.603 3.397 8 O -0.934 6.934 9 O -0.970 6.970 10 N -0.979 5.979 11 C 0.257 3.743 12 C -0.526 4.526 13 H 0.062 0.938 14 C 0.063 3.937 15 N -0.897 5.897 16 Si 0.896 3.104 17 H -0.274 1.274 18 H -0.287 1.287 19 H -0.276 1.276 20 C 0.160 3.840 21 C -0.148 4.148 22 C -0.051 4.051 23 C -0.172 4.172 24 C 0.089 3.911 25 N -0.486 5.486 26 C 0.090 3.910 27 H 0.025 0.975 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.068 0.932 32 H 0.027 0.973 33 H 0.079 0.921 34 H 0.039 0.961 35 H 0.077 0.923 36 H 0.085 0.915 37 H 0.126 0.874 38 H 0.129 0.871 39 H 0.037 0.963 40 H 0.036 0.964 41 H 0.264 0.736 42 H 0.100 0.900 43 H 0.095 0.905 44 H 0.142 0.858 45 H 0.133 0.867 46 H 0.151 0.849 47 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.318 -4.448 -5.902 16.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.274 5.274 3 C -0.132 4.132 4 C -0.066 4.066 5 C -0.144 4.144 6 C -0.771 4.771 7 S 2.694 3.306 8 O -0.924 6.924 9 O -0.960 6.960 10 N -0.816 5.816 11 C 0.135 3.865 12 C -0.565 4.565 13 H 0.080 0.920 14 C -0.139 4.139 15 N -0.536 5.536 16 Si 0.724 3.276 17 H -0.200 1.200 18 H -0.213 1.213 19 H -0.202 1.202 20 C 0.033 3.967 21 C -0.153 4.153 22 C -0.077 4.077 23 C -0.192 4.192 24 C -0.069 4.069 25 N -0.194 5.194 26 C -0.067 4.067 27 H 0.043 0.957 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.046 0.954 33 H 0.098 0.902 34 H 0.057 0.943 35 H 0.096 0.904 36 H 0.104 0.896 37 H 0.144 0.856 38 H 0.147 0.853 39 H 0.055 0.945 40 H 0.054 0.946 41 H 0.073 0.927 42 H 0.118 0.882 43 H 0.114 0.886 44 H 0.160 0.840 45 H 0.151 0.849 46 H 0.168 0.832 47 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -14.275 -4.389 -7.399 16.667 hybrid contribution 0.705 0.624 2.114 2.314 sum -13.571 -3.764 -5.285 15.042 Atomic orbital electron populations 1.22381 0.87230 1.02341 1.00444 1.61983 1.07919 1.14162 1.43317 1.22507 1.01550 0.88620 1.00568 1.22102 0.94593 0.98590 0.91320 1.21256 0.96534 1.00368 0.96291 1.30903 1.29343 1.09484 1.07376 1.05247 0.76850 0.74689 0.73800 1.93638 1.69135 1.44271 1.85343 1.93515 1.83487 1.66537 1.52497 1.57548 1.79372 1.12847 1.31806 1.19089 0.95690 0.91545 0.80166 1.21428 0.91776 1.37583 1.05702 0.92000 1.24913 0.98611 0.95065 0.95348 1.69905 1.35651 1.38651 1.09432 0.86583 0.85196 0.78377 0.77471 1.19953 1.21251 1.20175 1.20113 0.93329 0.80793 1.02473 1.21632 0.98619 0.99907 0.95093 1.21699 0.97831 0.93111 0.95102 1.22179 0.94398 1.01339 1.01308 1.22704 0.98702 0.96573 0.88879 1.67669 1.24725 1.11395 1.15660 1.22746 0.88184 0.95592 1.00162 0.95678 0.91330 0.91254 0.90703 0.91301 0.95401 0.90221 0.94308 0.90439 0.89633 0.85599 0.85265 0.94477 0.94624 0.92655 0.88162 0.88645 0.84032 0.84917 0.83159 0.82965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.57 60.07 0.57 0.79 16 2 N -0.55 -6.11 5.02 -251.26 -1.26 -7.37 16 3 C 0.02 0.16 9.32 60.06 0.56 0.72 16 4 C 0.06 0.73 4.96 -3.82 -0.02 0.71 16 5 C -0.11 -1.38 5.15 -26.73 -0.14 -1.51 16 6 C -0.64 -9.10 6.18 37.16 0.23 -8.87 16 7 S 2.60 48.44 5.37 -107.50 -0.58 47.86 16 8 O -0.93 -21.45 16.98 -57.54 -0.98 -22.43 16 9 O -0.97 -18.77 16.53 -57.54 -0.95 -19.72 16 10 N -0.98 -18.87 2.68 -116.94 -0.31 -19.18 16 11 C 0.26 6.02 5.01 -5.19 -0.03 5.99 16 12 C -0.53 -14.11 9.38 -34.44 -0.32 -14.43 16 13 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 14 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 15 N -0.90 -25.29 13.29 55.43 0.74 -24.55 16 16 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 17 H -0.27 -6.61 7.11 56.52 0.40 -6.20 16 18 H -0.29 -6.72 7.11 56.52 0.40 -6.31 16 19 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 20 C 0.16 2.58 5.81 -5.19 -0.03 2.55 16 21 C -0.15 -2.13 5.48 -104.48 -0.57 -2.71 16 22 C -0.05 -0.69 9.54 -39.28 -0.37 -1.07 16 23 C -0.17 -2.01 10.11 -39.44 -0.40 -2.41 16 24 C 0.09 1.05 11.18 -17.54 -0.20 0.85 16 25 N -0.49 -6.68 10.36 -13.25 -0.14 -6.81 16 26 C 0.09 1.24 9.18 -17.55 -0.16 1.08 16 27 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 28 H 0.07 0.53 8.12 -51.93 -0.42 0.11 16 29 H 0.07 0.58 8.12 -51.93 -0.42 0.15 16 30 H 0.07 0.78 6.47 -51.93 -0.34 0.44 16 31 H 0.07 0.59 8.12 -51.93 -0.42 0.17 16 32 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.08 0.88 8.06 -51.93 -0.42 0.46 16 34 H 0.04 0.45 8.12 -51.93 -0.42 0.03 16 35 H 0.08 1.01 6.55 -51.93 -0.34 0.67 16 36 H 0.09 1.09 8.14 -51.93 -0.42 0.66 16 37 H 0.13 1.61 5.90 -51.93 -0.31 1.31 16 38 H 0.13 1.77 8.14 -51.92 -0.42 1.35 16 39 H 0.04 0.94 7.61 -51.92 -0.39 0.54 16 40 H 0.04 0.83 7.66 -51.93 -0.40 0.43 16 41 H 0.26 7.09 8.31 -40.82 -0.34 6.76 16 42 H 0.10 1.62 8.06 -51.93 -0.42 1.20 16 43 H 0.10 1.44 6.77 -51.93 -0.35 1.09 16 44 H 0.14 1.93 7.93 -52.49 -0.42 1.52 16 45 H 0.13 1.21 8.06 -52.49 -0.42 0.79 16 46 H 0.15 1.33 8.06 -52.49 -0.42 0.90 16 47 H 0.15 1.91 7.68 -52.49 -0.40 1.51 16 LS Contribution 397.41 15.07 5.99 5.99 Total: -1.00 -33.06 397.41 -11.04 -44.10 By element: Atomic # 1 Polarization: 10.04 SS G_CDS: -7.55 Total: 2.48 kcal Atomic # 6 Polarization: -15.70 SS G_CDS: -0.97 Total: -16.68 kcal Atomic # 7 Polarization: -56.94 SS G_CDS: -0.98 Total: -57.92 kcal Atomic # 8 Polarization: -40.22 SS G_CDS: -1.93 Total: -42.15 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: 48.44 SS G_CDS: -0.58 Total: 47.86 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -33.06 -11.04 -44.10 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601292084.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.140 kcal (2) G-P(sol) polarization free energy of solvation -33.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.100 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds