Wall clock time and date at job start Sat Apr 11 2020 06:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46898 * 111.00176 * 2 1 4 4 C 1.46899 * 110.99627 * 123.95737 * 2 1 3 5 5 C 1.53007 * 109.46815 * 170.00063 * 4 2 1 6 6 C 1.53000 * 109.47041 * 180.02562 * 5 4 2 7 7 S 1.81394 * 109.46838 * 179.97438 * 6 5 4 8 8 O 1.42102 * 110.54862 * 68.37277 * 7 6 5 9 9 O 1.42103 * 110.54525 * 291.61737 * 7 6 5 10 10 N 1.65606 * 104.44882 * 179.97438 * 7 6 5 11 11 C 1.46503 * 120.00116 * 270.00115 * 10 7 6 12 12 C 1.50701 * 109.46930 * 264.99818 * 11 10 7 13 13 H 1.08001 * 119.99813 * 0.02562 * 12 11 10 14 14 C 1.37879 * 119.99911 * 179.97438 * 12 11 10 15 15 N 1.31515 * 119.99808 * 0.02562 * 14 12 11 16 16 Si 1.86794 * 119.99949 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.47265 * 60.00667 * 16 14 12 18 18 H 1.48503 * 109.47322 * 180.02562 * 16 14 12 19 19 H 1.48497 * 109.47536 * 300.00357 * 16 14 12 20 20 C 1.46503 * 120.00136 * 89.99608 * 10 7 6 21 21 C 1.50695 * 109.47313 * 265.00465 * 20 10 7 22 22 C 1.38678 * 120.41675 * 270.25293 * 21 20 10 23 23 C 1.38627 * 118.41930 * 180.24221 * 22 21 20 24 24 C 1.38232 * 119.16085 * 359.75178 * 23 22 21 25 25 N 1.31857 * 120.76541 * 359.97438 * 24 23 22 26 26 C 1.31889 * 121.72235 * 0.02562 * 25 24 23 27 27 H 1.09002 * 109.47345 * 296.04740 * 1 2 3 28 28 H 1.09005 * 109.46898 * 56.04506 * 1 2 3 29 29 H 1.09001 * 109.47627 * 176.04411 * 1 2 3 30 30 H 1.08993 * 109.47246 * 183.95715 * 3 2 1 31 31 H 1.08997 * 109.47130 * 303.95485 * 3 2 1 32 32 H 1.09001 * 109.46696 * 63.95272 * 3 2 1 33 33 H 1.09000 * 109.47494 * 50.00219 * 4 2 1 34 34 H 1.08995 * 109.47235 * 289.99656 * 4 2 1 35 35 H 1.08996 * 109.47382 * 59.99227 * 5 4 2 36 36 H 1.09002 * 109.47003 * 299.99407 * 5 4 2 37 37 H 1.08993 * 109.47385 * 59.99631 * 6 5 4 38 38 H 1.09002 * 109.46603 * 299.99486 * 6 5 4 39 39 H 1.09008 * 109.46620 * 24.99572 * 11 10 7 40 40 H 1.08997 * 109.47488 * 144.99479 * 11 10 7 41 41 H 0.97001 * 119.99938 * 179.97438 * 15 14 12 42 42 H 1.09001 * 109.46632 * 145.00274 * 20 10 7 43 43 H 1.08996 * 109.46728 * 25.00268 * 20 10 7 44 44 H 1.07994 * 120.78944 * 359.96926 * 22 21 20 45 45 H 1.07997 * 120.42083 * 179.72800 * 23 22 21 46 46 H 1.07999 * 119.61954 * 180.02562 * 24 23 22 47 47 H 1.08002 * 119.61237 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7661 1.1376 5 6 3.5044 -0.9554 0.9703 6 6 4.0526 -1.7538 2.1548 7 16 5.8415 -1.9790 1.9561 8 8 6.5191 -0.7378 2.0966 9 8 6.1169 -2.8443 0.8630 10 7 6.2995 -2.8469 3.2900 11 6 6.7082 -2.1503 4.5123 12 6 8.2086 -2.0107 4.5331 13 1 8.7986 -2.4014 3.7172 14 6 8.8280 -1.3833 5.5932 15 7 8.1094 -0.9072 6.5864 16 14 10.6878 -1.2109 5.6192 17 1 11.1294 -0.4326 4.4341 18 1 11.1022 -0.5047 6.8581 19 1 11.3104 -2.5586 5.5864 20 6 6.2958 -4.3113 3.2479 21 6 4.9936 -4.8266 3.8045 22 6 4.8661 -5.0944 5.1592 23 6 3.6512 -5.5719 5.6258 24 6 2.6130 -5.7589 4.7325 25 7 2.7686 -5.4883 3.4514 26 6 3.9099 -5.0328 2.9724 27 1 -0.3634 0.4513 0.9233 28 1 -0.3633 0.5740 -0.8525 29 1 -0.3634 -1.0252 -0.0709 30 1 3.0828 1.3432 -0.0709 31 1 1.5899 1.9163 -0.8524 32 1 1.7044 1.8723 0.9233 33 1 1.5089 -1.7407 1.1755 34 1 1.7975 -0.2249 2.0627 35 1 3.9909 0.0192 0.9322 36 1 3.7024 -1.4967 0.0451 37 1 3.5661 -2.7284 2.1923 38 1 3.8547 -1.2130 3.0802 39 1 6.2508 -1.1611 4.5370 40 1 6.3844 -2.7221 5.3820 41 1 8.5452 -0.4661 7.3324 42 1 7.1232 -4.6940 3.8455 43 1 6.4075 -4.6453 2.2164 44 1 5.6950 -4.9390 5.8338 45 1 3.5176 -5.7953 6.6740 46 1 1.6632 -6.1301 5.0881 47 1 3.9997 -4.8228 1.9169 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601292084.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:19 Heat of formation + Delta-G solvation = -53.437624 kcal Electronic energy + Delta-G solvation = -28646.065439 eV Core-core repulsion = 24762.279817 eV Total energy + Delta-G solvation = -3883.785622 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.10568 -38.79361 -38.16435 -37.59384 -36.91092 -34.78518 -34.59240 -33.29676 -32.43448 -29.25430 -28.55736 -28.32794 -26.89876 -24.78571 -24.18519 -24.03116 -22.80061 -21.90046 -19.80162 -18.74352 -18.48411 -17.91045 -17.61110 -17.50409 -17.00474 -16.78997 -16.34322 -16.22836 -16.02428 -15.69609 -15.55851 -15.23055 -14.71763 -14.54651 -14.25533 -13.99267 -13.85782 -13.67416 -13.41984 -13.32403 -13.27630 -13.12805 -13.09272 -12.93885 -12.90076 -12.84755 -12.61847 -12.52545 -12.38863 -12.35703 -11.97866 -11.82574 -11.78268 -11.46125 -10.71176 -10.57153 -10.48550 -9.98640 -9.74792 -9.38421 -8.18444 -6.28361 -0.71783 0.14511 0.36193 1.40021 1.43293 1.49963 1.78709 2.42504 2.78422 2.91001 3.02589 3.12309 3.18514 3.53507 3.64858 3.72500 3.84696 3.87041 3.92343 4.10229 4.12119 4.18367 4.28758 4.29334 4.44891 4.46141 4.58156 4.63424 4.64109 4.72464 4.78956 4.79580 4.88719 4.94151 4.95694 5.01029 5.03531 5.17469 5.28443 5.35378 5.52333 5.69136 5.79154 5.88914 5.97810 6.04494 6.13988 6.78899 7.00938 7.39743 8.88723 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.008786 B = 0.004390 C = 0.003301 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3186.262455 B = 6376.736682 C = 8479.956739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.563 5.563 3 C 0.012 3.988 4 C 0.066 3.934 5 C -0.112 4.112 6 C -0.610 4.610 7 S 2.598 3.402 8 O -0.987 6.987 9 O -0.983 6.983 10 N -0.985 5.985 11 C 0.273 3.727 12 C -0.543 4.543 13 H 0.051 0.949 14 C 0.016 3.984 15 N -0.923 5.923 16 Si 0.950 3.050 17 H -0.281 1.281 18 H -0.278 1.278 19 H -0.264 1.264 20 C 0.158 3.842 21 C -0.158 4.158 22 C -0.065 4.065 23 C -0.165 4.165 24 C 0.091 3.909 25 N -0.499 5.499 26 C 0.086 3.914 27 H 0.028 0.972 28 H 0.080 0.920 29 H 0.075 0.925 30 H 0.065 0.935 31 H 0.083 0.917 32 H 0.029 0.971 33 H 0.089 0.911 34 H 0.040 0.960 35 H 0.074 0.926 36 H 0.089 0.911 37 H 0.147 0.853 38 H 0.138 0.862 39 H 0.015 0.985 40 H 0.035 0.965 41 H 0.266 0.734 42 H 0.092 0.908 43 H 0.103 0.897 44 H 0.134 0.866 45 H 0.161 0.839 46 H 0.185 0.815 47 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.349 -5.375 -5.784 18.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.287 5.287 3 C -0.136 4.136 4 C -0.063 4.063 5 C -0.151 4.151 6 C -0.742 4.742 7 S 2.695 3.305 8 O -0.978 6.978 9 O -0.974 6.974 10 N -0.821 5.821 11 C 0.150 3.850 12 C -0.582 4.582 13 H 0.069 0.931 14 C -0.184 4.184 15 N -0.563 5.563 16 Si 0.775 3.225 17 H -0.206 1.206 18 H -0.203 1.203 19 H -0.189 1.189 20 C 0.032 3.968 21 C -0.162 4.162 22 C -0.092 4.092 23 C -0.185 4.185 24 C -0.066 4.066 25 N -0.208 5.208 26 C -0.071 4.071 27 H 0.046 0.954 28 H 0.099 0.901 29 H 0.094 0.906 30 H 0.084 0.916 31 H 0.102 0.898 32 H 0.047 0.953 33 H 0.108 0.892 34 H 0.058 0.942 35 H 0.092 0.908 36 H 0.108 0.892 37 H 0.165 0.835 38 H 0.157 0.843 39 H 0.033 0.967 40 H 0.053 0.947 41 H 0.075 0.925 42 H 0.110 0.890 43 H 0.121 0.879 44 H 0.152 0.848 45 H 0.179 0.821 46 H 0.202 0.798 47 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -16.255 -5.350 -7.294 18.602 hybrid contribution 1.212 0.873 2.040 2.529 sum -15.043 -4.477 -5.254 16.551 Atomic orbital electron populations 1.22448 0.85765 1.03079 1.01161 1.61983 1.09315 1.14473 1.42957 1.22558 1.01129 0.88554 1.01349 1.22041 0.93104 0.99373 0.91754 1.21378 0.97987 1.00043 0.95700 1.30543 1.23926 1.11160 1.08564 1.05121 0.78699 0.73410 0.73287 1.93572 1.72069 1.46239 1.85872 1.93486 1.84790 1.66375 1.52723 1.57352 1.80383 1.14155 1.30186 1.18624 0.93729 0.90845 0.81776 1.21780 0.93728 1.37405 1.05327 0.93074 1.25638 1.02624 0.94915 0.95183 1.69985 1.37112 1.39304 1.09899 0.85735 0.80624 0.78792 0.77328 1.20629 1.20301 1.18864 1.20189 0.94563 0.79004 1.03021 1.21383 0.97878 1.01264 0.95647 1.21788 0.98757 0.93818 0.94789 1.22471 0.93246 0.99929 1.02822 1.23301 0.99949 0.95162 0.88162 1.67737 1.24444 1.11803 1.16768 1.22828 0.88073 0.95715 1.00484 0.95358 0.90136 0.90622 0.91611 0.89801 0.95263 0.89228 0.94189 0.90787 0.89208 0.83539 0.84342 0.96696 0.94667 0.92486 0.88959 0.87868 0.84827 0.82109 0.79792 0.82233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.36 9.57 127.69 1.22 1.58 16 2 N -0.56 -11.40 5.02 -948.84 -4.76 -16.17 16 3 C 0.01 0.23 9.32 127.69 1.19 1.42 16 4 C 0.07 1.41 4.96 86.31 0.43 1.84 16 5 C -0.11 -2.79 5.15 30.60 0.16 -2.63 16 6 C -0.61 -16.62 6.18 71.98 0.44 -16.18 16 7 S 2.60 98.57 5.37 -56.49 -0.30 98.27 16 8 O -0.99 -47.23 16.98 -127.65 -2.17 -49.40 16 9 O -0.98 -38.48 16.53 -127.65 -2.11 -40.59 16 10 N -0.98 -38.88 2.68 -523.90 -1.41 -40.28 16 11 C 0.27 13.23 5.01 85.63 0.43 13.66 16 12 C -0.54 -29.99 9.38 25.60 0.24 -29.75 16 13 H 0.05 2.86 7.81 -2.91 -0.02 2.83 16 14 C 0.02 0.88 5.46 84.65 0.46 1.34 16 15 N -0.92 -52.78 13.29 21.45 0.28 -52.49 16 16 Si 0.95 44.12 29.54 68.60 2.03 46.15 16 17 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 18 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 19 H -0.26 -11.64 7.11 99.48 0.71 -10.93 16 20 C 0.16 5.19 5.81 85.63 0.50 5.69 16 21 C -0.16 -4.43 5.48 -19.77 -0.11 -4.54 16 22 C -0.06 -1.71 9.54 22.47 0.21 -1.49 16 23 C -0.17 -3.42 10.11 22.36 0.23 -3.19 16 24 C 0.09 1.86 11.18 84.69 0.95 2.80 16 25 N -0.50 -12.40 10.36 -195.83 -2.03 -14.43 16 26 C 0.09 2.23 9.18 84.67 0.78 3.00 16 27 H 0.03 0.42 8.14 -2.39 -0.02 0.40 16 28 H 0.08 1.04 8.12 -2.38 -0.02 1.02 16 29 H 0.08 1.06 8.12 -2.39 -0.02 1.04 16 30 H 0.07 1.34 6.47 -2.39 -0.02 1.32 16 31 H 0.08 1.30 8.12 -2.39 -0.02 1.28 16 32 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.09 1.72 8.06 -2.39 -0.02 1.70 16 34 H 0.04 0.84 8.12 -2.39 -0.02 0.82 16 35 H 0.07 1.91 6.55 -2.39 -0.02 1.90 16 36 H 0.09 2.18 8.14 -2.39 -0.02 2.16 16 37 H 0.15 3.46 5.90 -2.39 -0.01 3.45 16 38 H 0.14 3.64 8.14 -2.39 -0.02 3.62 16 39 H 0.02 0.79 7.61 -2.38 -0.02 0.77 16 40 H 0.04 1.69 7.66 -2.39 -0.02 1.67 16 41 H 0.27 14.43 8.31 -92.71 -0.77 13.65 16 42 H 0.09 3.10 8.06 -2.39 -0.02 3.08 16 43 H 0.10 3.16 6.77 -2.39 -0.02 3.14 16 44 H 0.13 3.67 7.93 -2.91 -0.02 3.65 16 45 H 0.16 2.37 8.06 -2.91 -0.02 2.35 16 46 H 0.19 2.42 8.06 -2.91 -0.02 2.40 16 47 H 0.16 3.76 7.68 -2.91 -0.02 3.74 16 Total: -1.00 -71.65 397.41 -2.40 -74.05 By element: Atomic # 1 Polarization: 20.40 SS G_CDS: 0.94 Total: 21.35 kcal Atomic # 6 Polarization: -33.58 SS G_CDS: 7.13 Total: -26.45 kcal Atomic # 7 Polarization: -115.46 SS G_CDS: -7.91 Total: -123.37 kcal Atomic # 8 Polarization: -85.71 SS G_CDS: -4.28 Total: -89.99 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Atomic # 16 Polarization: 98.57 SS G_CDS: -0.30 Total: 98.27 kcal Total: -71.65 -2.40 -74.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601292084.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.613 kcal (2) G-P(sol) polarization free energy of solvation -71.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.042 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds