Wall clock time and date at job start Sat Apr 11 2020 06:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34779 * 120.00418 * 2 1 4 4 O 1.21344 * 120.00388 * 174.92023 * 3 2 1 5 5 C 1.49446 * 119.99505 * 354.92454 * 3 2 1 6 6 O 1.21349 * 120.00382 * 85.37068 * 5 3 2 7 7 N 1.34778 * 119.99938 * 265.36831 * 5 3 2 8 8 C 1.47083 * 120.87992 * 354.60750 * 7 5 3 9 9 C 1.53697 * 108.27586 * 128.75224 * 8 7 5 10 10 N 1.46901 * 109.25852 * 54.08340 * 9 8 7 11 11 C 1.46898 * 111.00107 * 172.61003 * 10 9 8 12 12 C 1.50706 * 109.46820 * 294.29921 * 11 10 9 13 13 H 1.08005 * 120.00015 * 0.02562 * 12 11 10 14 14 C 1.37880 * 120.00054 * 180.02562 * 12 11 10 15 15 N 1.31518 * 119.99579 * 0.02562 * 14 12 11 16 16 Si 1.86794 * 119.99989 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47203 * 0.02562 * 16 14 12 18 18 H 1.48499 * 109.47084 * 120.00104 * 16 14 12 19 19 H 1.48497 * 109.47215 * 240.00071 * 16 14 12 20 20 C 1.46902 * 111.26600 * 296.75753 * 10 9 8 21 21 C 1.47079 * 120.88264 * 174.87895 * 7 5 3 22 22 C 1.46503 * 119.99923 * 180.02562 * 2 1 3 23 23 H 1.09007 * 108.85223 * 180.70205 * 22 2 1 24 24 C 1.52935 * 108.77608 * 62.18654 * 22 2 1 25 25 C 1.55161 * 108.96223 * 209.17985 * 24 22 2 26 26 S 1.83989 * 100.90423 * 41.43962 * 25 24 22 27 27 C 1.53712 * 108.88622 * 299.27585 * 22 2 1 28 28 H 1.09000 * 109.46934 * 275.22235 * 1 2 3 29 29 H 1.08998 * 109.47092 * 35.22315 * 1 2 3 30 30 H 1.09002 * 109.47106 * 155.22289 * 1 2 3 31 31 H 1.09000 * 109.62795 * 248.51842 * 8 7 5 32 32 H 1.09000 * 109.62610 * 9.10456 * 8 7 5 33 33 H 1.09004 * 109.64800 * 294.07646 * 9 8 7 34 34 H 1.08999 * 109.41859 * 173.94907 * 9 8 7 35 35 H 1.08994 * 109.47536 * 54.29721 * 11 10 9 36 36 H 1.08998 * 109.46952 * 174.30684 * 11 10 9 37 37 H 0.96998 * 119.99078 * 180.02562 * 15 14 12 38 38 H 1.09002 * 109.49020 * 303.14158 * 20 10 9 39 39 H 1.08998 * 109.48863 * 183.06535 * 20 10 9 40 40 H 1.08998 * 109.62844 * 350.90220 * 21 7 5 41 41 H 1.09001 * 109.62210 * 111.28407 * 21 7 5 42 42 H 1.09000 * 109.60719 * 329.11323 * 24 22 2 43 43 H 1.09004 * 109.60490 * 89.25439 * 24 22 2 44 44 H 1.08998 * 111.13285 * 283.53411 * 25 24 22 45 45 H 1.08997 * 111.16515 * 159.36646 * 25 24 22 46 46 H 1.09006 * 110.34128 * 242.34824 * 27 22 2 47 47 H 1.09000 * 110.34114 * 4.49770 * 27 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1390 1.1672 0.0000 4 8 3.3488 1.1692 0.0930 5 6 1.3961 2.4589 -0.1145 6 8 0.9409 2.9872 0.8786 7 7 1.2317 3.0371 -1.3208 8 6 1.8740 2.4776 -2.5199 9 6 0.8008 2.3085 -3.6071 10 7 0.1130 3.5902 -3.8123 11 6 -0.7988 3.5202 -4.9620 12 6 -0.0002 3.3271 -6.2254 13 1 1.0769 3.2624 -6.1788 14 6 -0.6446 3.2330 -7.4407 15 7 -1.9562 3.3123 -7.4974 16 14 0.3452 2.9930 -9.0066 17 1 1.7913 2.9352 -8.6741 18 1 -0.0630 1.7237 -9.6605 19 1 0.0941 4.1285 -9.9299 20 6 -0.6005 4.0123 -2.5995 21 6 0.4102 4.2476 -1.4721 22 6 2.1975 -1.2688 -0.0006 23 1 3.2669 -1.0581 0.0122 24 6 1.8585 -2.0323 -1.2816 25 6 1.9719 -3.5550 -1.0059 26 16 1.1973 -3.6659 0.6593 27 6 1.8303 -2.0558 1.2677 28 1 -0.3633 0.0935 1.0234 29 1 -0.3633 0.8395 -0.5927 30 1 -0.3633 -0.9331 -0.4307 31 1 2.6506 3.1575 -2.8703 32 1 2.3120 1.5082 -2.2821 33 1 0.0786 1.5540 -3.2950 34 1 1.2740 1.9965 -4.5381 35 1 -1.4828 2.6815 -4.8328 36 1 -1.3688 4.4468 -5.0306 37 1 -2.4095 3.2457 -8.3523 38 1 -1.3031 3.2341 -2.3016 39 1 -1.1435 4.9359 -2.7999 40 1 -0.1199 4.4491 -0.5413 41 1 1.0493 5.0950 -1.7203 42 1 0.8419 -1.7917 -1.5927 43 1 2.5559 -1.7507 -2.0706 44 1 3.0142 -3.8725 -0.9763 45 1 1.4089 -4.1309 -1.7404 46 1 2.7132 -2.2063 1.8891 47 1 1.0576 -1.5306 1.8291 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601426374.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:24 Heat of formation + Delta-G solvation = -62.379756 kcal Electronic energy + Delta-G solvation = -28889.314033 eV Core-core repulsion = 25005.140651 eV Total energy + Delta-G solvation = -3884.173382 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.27770 -40.45190 -39.05023 -38.15795 -36.12459 -34.75211 -34.40881 -32.32478 -30.61937 -30.12651 -28.31260 -27.81461 -26.48228 -25.07207 -24.68041 -23.50820 -22.01985 -20.99818 -20.08013 -19.04824 -18.48807 -18.43743 -18.04303 -17.57966 -16.77791 -16.52336 -16.33988 -16.13787 -16.02017 -15.54575 -15.48571 -15.36804 -15.09016 -14.85789 -14.41215 -14.30903 -14.06529 -13.89267 -13.58283 -13.46781 -13.30767 -13.08744 -13.03907 -12.90186 -12.87460 -12.67431 -12.64840 -12.44137 -12.33161 -12.14041 -11.89459 -11.78733 -11.26641 -11.02823 -10.80309 -10.60285 -10.13997 -10.02517 -9.06197 -8.77032 -8.18492 -6.27781 0.67723 0.78523 0.89307 1.22691 1.43137 1.43651 1.46166 1.57822 2.06175 2.42394 2.88281 3.13390 3.19983 3.33294 3.65454 3.79263 3.80454 3.87918 3.93585 4.00030 4.11203 4.14780 4.18533 4.35494 4.37777 4.41887 4.46719 4.57148 4.64876 4.67131 4.76764 4.81086 4.87343 4.90800 4.92457 4.96953 5.09216 5.15439 5.21408 5.31347 5.66025 5.74930 5.92320 6.05331 6.27390 6.46311 6.53728 6.56783 6.88349 7.42328 8.92600 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.011491 B = 0.003202 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2436.141363 B = 8742.298056 C =10271.590149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.584 5.584 3 C 0.524 3.476 4 O -0.537 6.537 5 C 0.517 3.483 6 O -0.545 6.545 7 N -0.588 5.588 8 C 0.121 3.879 9 C 0.058 3.942 10 N -0.542 5.542 11 C 0.210 3.790 12 C -0.519 4.519 13 H 0.068 0.932 14 C 0.004 3.996 15 N -0.934 5.934 16 Si 0.964 3.036 17 H -0.260 1.260 18 H -0.281 1.281 19 H -0.284 1.284 20 C 0.045 3.955 21 C 0.124 3.876 22 C 0.134 3.866 23 H 0.107 0.893 24 C -0.137 4.137 25 C -0.052 4.052 26 S -0.322 6.322 27 C -0.072 4.072 28 H 0.073 0.927 29 H 0.063 0.937 30 H 0.107 0.893 31 H 0.089 0.911 32 H 0.092 0.908 33 H 0.028 0.972 34 H 0.087 0.913 35 H -0.034 1.034 36 H 0.007 0.993 37 H 0.263 0.737 38 H 0.027 0.973 39 H 0.088 0.912 40 H 0.100 0.900 41 H 0.087 0.913 42 H 0.089 0.911 43 H 0.101 0.899 44 H 0.108 0.892 45 H 0.124 0.876 46 H 0.106 0.894 47 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.022 -11.873 14.210 19.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.318 5.318 3 C 0.306 3.694 4 O -0.414 6.414 5 C 0.300 3.700 6 O -0.423 6.423 7 N -0.321 5.321 8 C -0.002 4.002 9 C -0.071 4.071 10 N -0.267 5.267 11 C 0.084 3.916 12 C -0.558 4.558 13 H 0.086 0.914 14 C -0.194 4.194 15 N -0.574 5.574 16 Si 0.790 3.210 17 H -0.184 1.184 18 H -0.206 1.206 19 H -0.210 1.210 20 C -0.084 4.084 21 C 0.003 3.997 22 C 0.030 3.970 23 H 0.125 0.875 24 C -0.176 4.176 25 C -0.200 4.200 26 S -0.097 6.097 27 C -0.221 4.221 28 H 0.092 0.908 29 H 0.082 0.918 30 H 0.125 0.875 31 H 0.107 0.893 32 H 0.110 0.890 33 H 0.046 0.954 34 H 0.106 0.894 35 H -0.016 1.016 36 H 0.025 0.975 37 H 0.072 0.928 38 H 0.046 0.954 39 H 0.106 0.894 40 H 0.118 0.882 41 H 0.105 0.895 42 H 0.108 0.892 43 H 0.119 0.881 44 H 0.127 0.873 45 H 0.143 0.857 46 H 0.124 0.876 47 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 6.933 -12.089 15.098 20.546 hybrid contribution -0.034 0.426 -1.214 1.287 sum 6.899 -11.664 13.883 19.401 Atomic orbital electron populations 1.22049 0.77137 1.04760 1.03411 1.47987 1.08338 1.04407 1.71036 1.20178 0.87450 0.85025 0.76734 1.90785 1.13850 1.86673 1.50067 1.20267 0.79771 0.86143 0.83807 1.90773 1.49902 1.65054 1.36558 1.48310 1.48484 1.28451 1.06894 1.22098 0.95296 0.99653 0.83113 1.22356 0.95828 0.90302 0.98622 1.61973 1.31204 1.29638 1.03865 1.19357 0.90270 0.93976 0.87975 1.21488 0.93997 1.48725 0.91571 0.91427 1.25845 0.95813 0.95106 1.02647 1.70085 1.09141 1.51662 1.26559 0.85402 0.79261 0.77492 0.78879 1.18431 1.20643 1.20979 1.22438 0.94913 1.01022 0.90019 1.21856 0.92970 0.86017 0.98877 1.21883 0.98731 0.82410 0.93943 0.87457 1.22739 1.05119 0.92981 0.96752 1.24378 1.04535 0.97693 0.93354 1.88147 1.71042 1.29369 1.21125 1.24290 1.05039 0.93433 0.99337 0.90812 0.91828 0.87488 0.89316 0.88990 0.95399 0.89429 1.01623 0.97491 0.92798 0.95434 0.89374 0.88157 0.89456 0.89224 0.88068 0.87312 0.85734 0.87596 0.87628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.13 8.98 127.77 1.15 2.28 16 2 N -0.58 -11.24 2.64 -822.94 -2.18 -13.42 16 3 C 0.52 13.60 5.49 87.27 0.48 14.08 16 4 O -0.54 -16.37 16.41 -3.23 -0.05 -16.42 16 5 C 0.52 14.86 5.70 87.27 0.50 15.35 16 6 O -0.55 -18.19 16.58 -3.24 -0.05 -18.25 16 7 N -0.59 -16.09 3.00 -818.63 -2.46 -18.55 16 8 C 0.12 3.18 6.56 86.50 0.57 3.75 16 9 C 0.06 1.87 5.47 86.54 0.47 2.34 16 10 N -0.54 -20.54 4.62 -898.88 -4.15 -24.69 16 11 C 0.21 10.19 4.72 85.56 0.40 10.60 16 12 C -0.52 -27.02 8.41 25.60 0.22 -26.80 16 13 H 0.07 3.41 7.13 -2.91 -0.02 3.39 16 14 C 0.00 0.22 5.46 84.65 0.46 0.68 16 15 N -0.93 -53.39 13.29 21.45 0.28 -53.11 16 16 Si 0.96 41.68 29.54 68.60 2.03 43.70 16 17 H -0.26 -10.68 7.11 99.48 0.71 -9.98 16 18 H -0.28 -11.86 7.11 99.48 0.71 -11.16 16 19 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 20 C 0.05 1.41 5.62 86.38 0.49 1.90 16 21 C 0.12 3.36 6.58 86.35 0.57 3.93 16 22 C 0.13 2.08 2.99 45.21 0.13 2.21 16 23 H 0.11 1.89 6.86 -2.38 -0.02 1.87 16 24 C -0.14 -1.65 5.86 31.31 0.18 -1.46 16 25 C -0.05 -0.54 7.52 72.72 0.55 0.01 16 26 S -0.32 -5.02 23.23 -56.49 -1.31 -6.33 16 27 C -0.07 -1.04 6.87 72.22 0.50 -0.55 16 28 H 0.07 1.16 7.99 -2.39 -0.02 1.14 16 29 H 0.06 1.23 6.99 -2.39 -0.02 1.22 16 30 H 0.11 1.40 6.51 -2.39 -0.02 1.38 16 31 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 32 H 0.09 2.13 6.37 -2.39 -0.02 2.12 16 33 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.09 3.07 6.67 -2.39 -0.02 3.06 16 35 H -0.03 -1.79 8.12 -2.39 -0.02 -1.81 16 36 H 0.01 0.37 7.97 -2.39 -0.02 0.35 16 37 H 0.26 14.22 8.31 -92.71 -0.77 13.45 16 38 H 0.03 0.87 8.14 -2.39 -0.02 0.85 16 39 H 0.09 2.72 7.99 -2.39 -0.02 2.71 16 40 H 0.10 2.58 7.10 -2.39 -0.02 2.56 16 41 H 0.09 2.27 8.14 -2.39 -0.02 2.25 16 42 H 0.09 1.14 6.23 -2.39 -0.01 1.12 16 43 H 0.10 1.12 8.14 -2.38 -0.02 1.10 16 44 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 45 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 46 H 0.11 1.41 8.14 -2.38 -0.02 1.39 16 47 H 0.11 1.59 7.15 -2.39 -0.02 1.57 16 Total: -1.00 -66.31 383.37 -0.27 -66.57 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: 0.97 Total: 12.17 kcal Atomic # 6 Polarization: 21.66 SS G_CDS: 6.66 Total: 28.32 kcal Atomic # 7 Polarization: -101.26 SS G_CDS: -8.50 Total: -109.76 kcal Atomic # 8 Polarization: -34.56 SS G_CDS: -0.11 Total: -34.67 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 2.03 Total: 43.70 kcal Atomic # 16 Polarization: -5.02 SS G_CDS: -1.31 Total: -6.33 kcal Total: -66.31 -0.27 -66.57 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601426374.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.191 kcal (2) G-P(sol) polarization free energy of solvation -66.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds