Wall clock time and date at job start Sat Apr 11 2020 06:22:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34780 * 119.99766 * 2 1 4 4 O 1.21346 * 119.99859 * 174.91842 * 3 2 1 5 5 C 1.49445 * 119.99984 * 354.91371 * 3 2 1 6 6 O 1.21352 * 119.99964 * 85.37854 * 5 3 2 7 7 N 1.34773 * 120.00299 * 265.37668 * 5 3 2 8 8 C 1.47077 * 120.88145 * 354.60408 * 7 5 3 9 9 C 1.53698 * 108.27732 * 128.75349 * 8 7 5 10 10 N 1.46896 * 109.25680 * 54.08608 * 9 8 7 11 11 C 1.46894 * 111.00216 * 172.60901 * 10 9 8 12 12 C 1.50703 * 109.47270 * 59.31385 * 11 10 9 13 13 H 1.07999 * 119.99929 * 5.02106 * 12 11 10 14 14 C 1.37876 * 120.00290 * 185.01780 * 12 11 10 15 15 N 1.31518 * 119.99642 * 0.02562 * 14 12 11 16 16 Si 1.86802 * 120.00271 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47219 * 59.99812 * 16 14 12 18 18 H 1.48497 * 109.46988 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.46745 * 300.00142 * 16 14 12 20 20 C 1.46901 * 111.26626 * 296.75724 * 10 9 8 21 21 C 1.47087 * 120.88303 * 174.88140 * 7 5 3 22 22 C 1.46503 * 120.00394 * 179.97438 * 2 1 3 23 23 H 1.08998 * 109.99317 * 178.73166 * 22 2 1 24 24 C 1.53861 * 109.97030 * 300.00250 * 22 2 1 25 25 C 1.54273 * 108.77812 * 166.52898 * 24 22 2 26 26 S 1.83101 * 104.65017 * 332.12864 * 25 24 22 27 27 C 1.54727 * 109.76482 * 57.59104 * 22 2 1 28 28 H 1.09001 * 109.47261 * 275.20299 * 1 2 3 29 29 H 1.09003 * 109.47164 * 35.19971 * 1 2 3 30 30 H 1.09004 * 109.47176 * 155.20392 * 1 2 3 31 31 H 1.09000 * 109.63088 * 248.52372 * 8 7 5 32 32 H 1.09006 * 109.62877 * 9.10388 * 8 7 5 33 33 H 1.09001 * 109.64973 * 294.08179 * 9 8 7 34 34 H 1.09000 * 109.44447 * 173.96248 * 9 8 7 35 35 H 1.09003 * 109.47791 * 179.31421 * 11 10 9 36 36 H 1.09004 * 109.47234 * 299.31708 * 11 10 9 37 37 H 0.97007 * 119.99668 * 179.97438 * 15 14 12 38 38 H 1.09002 * 109.49339 * 303.13935 * 20 10 9 39 39 H 1.09004 * 109.49113 * 183.06760 * 20 10 9 40 40 H 1.08994 * 109.62613 * 350.90242 * 21 7 5 41 41 H 1.09001 * 109.62460 * 111.47569 * 21 7 5 42 42 H 1.08995 * 109.60869 * 46.69265 * 24 22 2 43 43 H 1.09003 * 109.60892 * 286.35455 * 24 22 2 44 44 H 1.08996 * 110.40375 * 90.92250 * 25 24 22 45 45 H 1.09002 * 110.39858 * 213.33873 * 25 24 22 46 46 H 1.08998 * 110.88292 * 80.30368 * 27 22 2 47 47 H 1.09000 * 111.07300 * 316.68670 * 27 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1673 0.0000 4 8 3.3487 1.1693 0.0931 5 6 1.3960 2.4589 -0.1147 6 8 0.9407 2.9873 0.8783 7 7 1.2316 3.0369 -1.3211 8 6 1.8739 2.4774 -2.5201 9 6 0.8007 2.3083 -3.6073 10 7 0.1129 3.5899 -3.8127 11 6 -0.7988 3.5198 -4.9623 12 6 -1.8221 2.4388 -4.7268 13 1 -1.8485 1.9170 -3.7817 14 6 -2.7247 2.1161 -5.7179 15 7 -2.6922 2.7514 -6.8690 16 14 -3.9936 0.7768 -5.4257 17 1 -4.8481 1.1482 -4.2694 18 1 -4.8386 0.6227 -6.6370 19 1 -3.3023 -0.5058 -5.1385 20 6 -0.6006 4.0120 -2.6000 21 6 0.4100 4.2476 -1.4725 22 6 2.1976 -1.2687 0.0006 23 1 3.2707 -1.0794 -0.0222 24 6 1.8341 -2.0848 1.2533 25 6 2.3393 -3.5306 1.0678 26 16 2.3328 -3.7947 -0.7440 27 6 1.7834 -2.1126 -1.2284 28 1 -0.3634 0.0932 1.0234 29 1 -0.3633 0.8398 -0.5924 30 1 -0.3634 -0.9329 -0.4310 31 1 2.6505 3.1573 -2.8705 32 1 2.3120 1.5081 -2.2822 33 1 0.0785 1.5538 -3.2952 34 1 1.2736 1.9960 -4.5384 35 1 -1.3040 4.4779 -5.0845 36 1 -0.2300 3.2914 -5.8637 37 1 -3.3270 2.5241 -7.5665 38 1 -1.3033 3.2339 -2.3019 39 1 -1.1437 4.9356 -2.8004 40 1 -0.1200 4.4491 -0.5417 41 1 1.0487 5.0943 -1.7241 42 1 0.7523 -2.0894 1.3857 43 1 2.3080 -1.6413 2.1290 44 1 3.3498 -3.6337 1.4632 45 1 1.6654 -4.2342 1.5568 46 1 2.3056 -1.7768 -2.1242 47 1 0.7039 -2.0848 -1.3771 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601426375.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:26 Heat of formation + Delta-G solvation = -66.137377 kcal Electronic energy + Delta-G solvation = -29171.973158 eV Core-core repulsion = 25287.636833 eV Total energy + Delta-G solvation = -3884.336325 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.25285 -40.42976 -39.07126 -38.16113 -36.17934 -34.88495 -34.32248 -32.25458 -30.59890 -30.04761 -28.33812 -27.63565 -26.48449 -25.02664 -24.59215 -23.68023 -22.05765 -21.07912 -20.13261 -19.13322 -18.56806 -18.30735 -17.89194 -17.63665 -16.79036 -16.61359 -16.25457 -16.01419 -15.97067 -15.75402 -15.55502 -15.22311 -15.05731 -14.92822 -14.38682 -14.28496 -13.80898 -13.78959 -13.66133 -13.59128 -13.46117 -13.05316 -13.00975 -12.96970 -12.75542 -12.74925 -12.59718 -12.43965 -12.23402 -12.03496 -11.91836 -11.82536 -11.63320 -11.19516 -10.77423 -10.58700 -10.13828 -10.01030 -9.06165 -8.77361 -8.14620 -6.33620 0.54934 0.77810 0.90522 1.30096 1.39163 1.40043 1.41990 1.47404 2.10955 2.38077 2.88453 3.11858 3.25331 3.32297 3.55495 3.78513 3.81895 3.86021 3.97332 3.99294 4.10316 4.14090 4.29731 4.35700 4.42905 4.45200 4.49229 4.52032 4.66823 4.69629 4.75501 4.84722 4.85554 4.89385 5.01558 5.05942 5.11331 5.14690 5.29957 5.35346 5.73495 5.74756 5.90959 6.03534 6.21886 6.44079 6.45241 6.55452 6.85893 7.38395 8.87936 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009994 B = 0.003917 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2800.922623 B = 7146.870903 C = 8995.053113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.581 5.581 3 C 0.524 3.476 4 O -0.537 6.537 5 C 0.517 3.483 6 O -0.545 6.545 7 N -0.586 5.586 8 C 0.119 3.881 9 C 0.058 3.942 10 N -0.539 5.539 11 C 0.202 3.798 12 C -0.554 4.554 13 H 0.059 0.941 14 C 0.017 3.983 15 N -0.925 5.925 16 Si 0.950 3.050 17 H -0.271 1.271 18 H -0.287 1.287 19 H -0.267 1.267 20 C 0.055 3.945 21 C 0.123 3.877 22 C 0.135 3.865 23 H 0.107 0.893 24 C -0.135 4.135 25 C -0.058 4.058 26 S -0.316 6.316 27 C -0.078 4.078 28 H 0.080 0.920 29 H 0.061 0.939 30 H 0.107 0.893 31 H 0.093 0.907 32 H 0.088 0.912 33 H 0.033 0.967 34 H 0.079 0.921 35 H 0.007 0.993 36 H 0.011 0.989 37 H 0.264 0.736 38 H 0.027 0.973 39 H 0.083 0.917 40 H 0.097 0.903 41 H 0.090 0.910 42 H 0.095 0.905 43 H 0.096 0.904 44 H 0.106 0.894 45 H 0.118 0.882 46 H 0.107 0.893 47 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.904 -9.798 15.421 19.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.314 5.314 3 C 0.307 3.693 4 O -0.413 6.413 5 C 0.300 3.700 6 O -0.423 6.423 7 N -0.320 5.320 8 C -0.003 4.003 9 C -0.072 4.072 10 N -0.263 5.263 11 C 0.076 3.924 12 C -0.593 4.593 13 H 0.077 0.923 14 C -0.183 4.183 15 N -0.565 5.565 16 Si 0.775 3.225 17 H -0.196 1.196 18 H -0.213 1.213 19 H -0.192 1.192 20 C -0.074 4.074 21 C 0.002 3.998 22 C 0.031 3.969 23 H 0.125 0.875 24 C -0.174 4.174 25 C -0.206 4.206 26 S -0.091 6.091 27 C -0.227 4.227 28 H 0.099 0.901 29 H 0.080 0.920 30 H 0.125 0.875 31 H 0.111 0.889 32 H 0.106 0.894 33 H 0.051 0.949 34 H 0.098 0.902 35 H 0.025 0.975 36 H 0.030 0.970 37 H 0.073 0.927 38 H 0.045 0.955 39 H 0.101 0.899 40 H 0.115 0.885 41 H 0.108 0.892 42 H 0.113 0.887 43 H 0.114 0.886 44 H 0.125 0.875 45 H 0.136 0.864 46 H 0.125 0.875 47 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 8.839 -10.114 15.060 20.180 hybrid contribution -1.774 -0.026 0.264 1.794 sum 7.065 -10.140 15.324 19.686 Atomic orbital electron populations 1.22121 0.76976 1.04807 1.03742 1.47791 1.08349 1.04259 1.71047 1.20202 0.87438 0.85020 0.76658 1.90787 1.13866 1.86703 1.49990 1.20225 0.79817 0.86073 0.83894 1.90770 1.49931 1.65021 1.36571 1.48285 1.48388 1.28466 1.06841 1.22126 0.95318 0.99549 0.83313 1.22276 0.95392 0.91351 0.98136 1.62392 1.30439 1.28689 1.04766 1.19414 0.89587 0.94917 0.88512 1.21913 1.16606 1.20651 1.00167 0.92309 1.25734 0.99406 0.98398 0.94798 1.70049 1.37862 1.42881 1.05669 0.85732 0.79204 0.79971 0.77560 1.19570 1.21303 1.19189 1.22251 0.94639 1.00744 0.89777 1.21917 0.92980 0.85940 0.98985 1.22361 0.98487 0.82048 0.94027 0.87464 1.22563 1.04057 0.93026 0.97746 1.23977 1.06633 0.98678 0.91309 1.87972 1.90328 1.20116 1.10652 1.24539 1.05650 0.91756 1.00719 0.90130 0.92032 0.87504 0.88882 0.89424 0.94872 0.90215 0.97513 0.97043 0.92684 0.95481 0.89911 0.88502 0.89169 0.88686 0.88597 0.87501 0.86392 0.87490 0.87443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.13 9.08 127.77 1.16 2.29 16 2 N -0.58 -11.80 2.81 -819.25 -2.30 -14.10 16 3 C 0.52 14.16 5.49 87.27 0.48 14.63 16 4 O -0.54 -16.91 16.46 -3.23 -0.05 -16.96 16 5 C 0.52 15.33 5.70 87.27 0.50 15.83 16 6 O -0.55 -18.61 16.58 -3.25 -0.05 -18.66 16 7 N -0.59 -16.53 3.00 -818.63 -2.46 -18.99 16 8 C 0.12 3.17 6.56 86.50 0.57 3.74 16 9 C 0.06 1.89 5.17 86.54 0.45 2.33 16 10 N -0.54 -20.24 4.83 -898.88 -4.34 -24.58 16 11 C 0.20 9.64 5.11 85.56 0.44 10.08 16 12 C -0.55 -27.91 7.75 25.60 0.20 -27.71 16 13 H 0.06 2.87 5.88 -2.91 -0.02 2.85 16 14 C 0.02 0.87 5.46 84.65 0.46 1.33 16 15 N -0.93 -52.21 13.29 21.45 0.28 -51.93 16 16 Si 0.95 40.91 29.54 68.60 2.03 42.93 16 17 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 18 H -0.29 -12.41 7.11 99.48 0.71 -11.70 16 19 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 20 C 0.06 1.84 5.24 86.38 0.45 2.29 16 21 C 0.12 3.44 6.58 86.35 0.57 4.01 16 22 C 0.14 2.31 2.93 45.87 0.13 2.44 16 23 H 0.11 2.19 6.96 -2.39 -0.02 2.17 16 24 C -0.13 -1.63 5.89 31.32 0.18 -1.45 16 25 C -0.06 -0.65 7.33 72.41 0.53 -0.12 16 26 S -0.32 -5.61 23.26 -56.49 -1.31 -6.93 16 27 C -0.08 -1.30 6.80 72.57 0.49 -0.81 16 28 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.06 1.32 6.99 -2.39 -0.02 1.31 16 30 H 0.11 1.39 6.21 -2.38 -0.01 1.37 16 31 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 32 H 0.09 2.13 6.37 -2.38 -0.02 2.11 16 33 H 0.03 1.17 6.79 -2.39 -0.02 1.16 16 34 H 0.08 2.66 8.11 -2.39 -0.02 2.64 16 35 H 0.01 0.35 8.07 -2.39 -0.02 0.33 16 36 H 0.01 0.60 8.14 -2.38 -0.02 0.58 16 37 H 0.26 14.22 8.31 -92.70 -0.77 13.45 16 38 H 0.03 0.99 6.92 -2.39 -0.02 0.98 16 39 H 0.08 2.76 8.05 -2.38 -0.02 2.74 16 40 H 0.10 2.64 7.10 -2.39 -0.02 2.62 16 41 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 42 H 0.09 0.97 7.34 -2.39 -0.02 0.95 16 43 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 44 H 0.11 1.03 8.14 -2.39 -0.02 1.02 16 45 H 0.12 0.97 8.14 -2.39 -0.02 0.95 16 46 H 0.11 1.90 8.14 -2.39 -0.02 1.88 16 47 H 0.11 1.65 6.28 -2.39 -0.01 1.64 16 Total: -1.00 -64.58 380.68 -0.62 -65.21 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: 0.97 Total: 15.12 kcal Atomic # 6 Polarization: 22.28 SS G_CDS: 6.61 Total: 28.89 kcal Atomic # 7 Polarization: -100.78 SS G_CDS: -8.82 Total: -109.60 kcal Atomic # 8 Polarization: -35.51 SS G_CDS: -0.11 Total: -35.62 kcal Atomic # 14 Polarization: 40.91 SS G_CDS: 2.03 Total: 42.93 kcal Atomic # 16 Polarization: -5.61 SS G_CDS: -1.31 Total: -6.93 kcal Total: -64.58 -0.62 -65.21 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601426375.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.930 kcal (2) G-P(sol) polarization free energy of solvation -64.585 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds