Wall clock time and date at job start Sat Apr 11 2020 06:22:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46498 * 120.00118 * 2 1 4 4 C 1.50702 * 109.47502 * 270.00207 * 3 2 1 5 5 H 1.07995 * 119.99838 * 359.97438 * 4 3 2 6 6 C 1.37875 * 119.99968 * 179.97438 * 4 3 2 7 7 N 1.31509 * 120.00491 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 119.99696 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.47035 * 60.00117 * 8 6 4 10 10 H 1.48504 * 109.47205 * 180.02562 * 8 6 4 11 11 H 1.48505 * 109.47112 * 300.00068 * 8 6 4 12 12 C 1.39545 * 120.00197 * 180.02562 * 2 1 3 13 13 C 1.39074 * 119.91361 * 0.02562 * 12 2 1 14 14 C 1.37761 * 120.08176 * 180.02562 * 13 12 2 15 15 C 1.39774 * 119.91554 * 359.97088 * 14 13 12 16 16 C 1.47386 * 120.08202 * 179.97438 * 15 14 13 17 17 N 1.29875 * 119.99864 * 179.97438 * 16 15 14 18 18 N 1.40095 * 119.99907 * 179.97438 * 17 16 15 19 19 C 1.38656 * 120.00225 * 179.97438 * 18 17 16 20 20 N 1.31725 * 120.45141 * 0.02562 * 19 18 17 21 21 C 1.33204 * 120.74119 * 179.97438 * 20 19 18 22 22 C 1.35044 * 121.73689 * 359.97438 * 21 20 19 23 23 N 1.36366 * 120.87874 * 359.97438 * 22 21 20 24 24 C 1.46507 * 120.43289 * 180.02562 * 23 22 21 25 25 C 1.35180 * 119.13702 * 359.76542 * 23 22 21 26 26 O 1.21930 * 120.79339 * 180.22878 * 25 23 22 27 27 C 1.39778 * 119.83563 * 0.25452 * 15 14 13 28 28 C 1.37763 * 119.91219 * 359.51723 * 27 15 14 29 29 H 1.08992 * 109.47038 * 269.99873 * 1 2 3 30 30 H 1.08996 * 109.47272 * 30.00110 * 1 2 3 31 31 H 1.08998 * 109.46797 * 149.99900 * 1 2 3 32 32 H 1.09005 * 109.46822 * 30.00289 * 3 2 1 33 33 H 1.09000 * 109.47601 * 149.99845 * 3 2 1 34 34 H 0.96999 * 120.00477 * 179.97438 * 7 6 4 35 35 H 1.07996 * 119.95880 * 359.97142 * 13 12 2 36 36 H 1.08002 * 120.03825 * 179.97438 * 14 13 12 37 37 H 1.07999 * 120.00008 * 0.02562 * 16 15 14 38 38 H 0.97004 * 120.00474 * 0.02562 * 18 17 16 39 39 H 1.08002 * 119.13303 * 179.97438 * 21 20 19 40 40 H 1.07996 * 119.56317 * 179.97438 * 22 21 20 41 41 H 1.08998 * 109.46853 * 359.97438 * 24 23 22 42 42 H 1.08994 * 109.46849 * 119.99927 * 24 23 22 43 43 H 1.08997 * 109.46730 * 239.99772 * 24 23 22 44 44 H 1.08000 * 120.04517 * 179.74314 * 27 15 14 45 45 H 1.07997 * 119.95952 * 180.22993 * 28 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 -1.4208 5 1 2.0981 1.0959 -2.2417 6 6 3.1260 2.8780 -1.6726 7 7 3.5534 3.6181 -0.6731 8 14 3.4367 3.4177 -3.4338 9 1 2.1389 3.5950 -4.1334 10 1 4.1793 4.7037 -3.4338 11 1 4.2394 2.3831 -4.1343 12 6 2.1628 -1.2085 -0.0005 13 6 1.4656 -2.4119 -0.0016 14 6 2.1509 -3.6069 -0.0016 15 6 3.5487 -3.6089 -0.0012 16 6 4.2856 -4.8853 -0.0006 17 7 5.5844 -4.8852 -0.0007 18 7 6.2849 -6.0985 0.0004 19 6 7.6714 -6.0985 -0.0002 20 7 8.3390 -4.9630 -0.0013 21 6 9.6711 -4.9563 -0.0014 22 6 10.3872 -6.1012 0.0002 23 7 9.7661 -7.3152 0.0024 24 6 10.5526 -8.5512 0.0046 25 6 8.4151 -7.3634 0.0079 26 8 7.8286 -8.4323 0.0142 27 6 4.2458 -2.3974 0.0047 28 6 3.5535 -1.2064 -0.0001 29 1 -0.3633 0.0000 1.0276 30 1 -0.3633 0.8899 -0.5138 31 1 -0.3633 -0.8900 -0.5138 32 1 1.6084 2.0283 0.5139 33 1 3.1499 1.1384 0.5138 34 1 4.0302 4.4440 -0.8503 35 1 0.3856 -2.4095 -0.0016 36 1 1.6088 -4.5410 -0.0020 37 1 3.7456 -5.8206 -0.0009 38 1 5.7999 -6.9386 0.0009 39 1 10.1921 -4.0103 -0.0027 40 1 11.4662 -6.0548 -0.0004 41 1 11.6146 -8.3060 0.0037 42 1 10.3142 -9.1319 0.8956 43 1 10.3141 -9.1352 -0.8843 44 1 5.3258 -2.3950 0.0093 45 1 4.0914 -0.2699 0.0007 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000748078932.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:44 Heat of formation + Delta-G solvation = 99.591084 kcal Electronic energy + Delta-G solvation = -27492.409815 eV Core-core repulsion = 23512.108815 eV Total energy + Delta-G solvation = -3980.301000 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.61492 -39.02059 -37.74794 -37.55657 -36.06244 -35.09996 -32.85581 -32.24165 -30.55565 -29.81391 -28.81783 -28.15453 -27.77599 -25.41360 -23.99541 -23.63141 -22.87318 -21.89969 -21.03349 -19.71036 -18.77603 -18.13790 -17.17836 -16.77219 -16.60147 -16.48654 -16.41253 -15.70628 -14.98122 -14.61823 -14.54928 -14.22449 -14.20896 -13.78173 -13.75592 -13.57969 -13.32634 -13.01031 -12.96725 -12.76218 -12.69804 -12.16434 -12.01405 -11.54189 -11.46117 -11.29092 -11.23582 -11.11505 -10.93800 -10.70031 -10.35362 -10.12662 -10.00336 -9.79786 -9.55428 -9.33937 -8.71546 -8.50886 -8.35323 -7.46550 -6.44112 -6.02821 -4.18525 0.52868 1.49713 1.55761 1.78721 2.10596 2.68007 2.92886 3.29047 3.33572 3.37073 3.53410 3.83522 4.06677 4.21353 4.40303 4.42004 4.56452 4.57709 4.77585 4.90671 5.06979 5.14739 5.20577 5.21629 5.41737 5.51064 5.66619 5.74557 5.93782 6.00227 6.03599 6.05416 6.21426 6.32226 6.37434 6.38324 6.59597 6.77777 6.92196 6.96650 7.11433 7.20709 7.32184 7.39532 7.50813 7.76552 7.79432 8.11640 8.18817 8.34546 8.38960 8.89271 9.48384 10.94943 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013018 B = 0.002144 C = 0.001903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2150.360354 B =13055.258145 C =14708.331904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.607 5.607 3 C 0.246 3.754 4 C -0.534 4.534 5 H 0.059 0.941 6 C 0.063 3.937 7 N -0.894 5.894 8 Si 0.897 3.103 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.275 1.275 12 C 0.259 3.741 13 C -0.228 4.228 14 C -0.039 4.039 15 C -0.152 4.152 16 C 0.134 3.866 17 N -0.241 5.241 18 N -0.544 5.544 19 C 0.359 3.641 20 N -0.463 5.463 21 C 0.023 3.977 22 C -0.004 4.004 23 N -0.482 5.482 24 C 0.072 3.928 25 C 0.485 3.515 26 O -0.538 6.538 27 C -0.025 4.025 28 C -0.196 4.196 29 H 0.039 0.961 30 H 0.069 0.931 31 H 0.057 0.943 32 H 0.032 0.968 33 H 0.039 0.961 34 H 0.265 0.735 35 H 0.119 0.881 36 H 0.115 0.885 37 H 0.108 0.892 38 H 0.398 0.602 39 H 0.172 0.828 40 H 0.164 0.836 41 H 0.092 0.908 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.128 0.872 45 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.491 -21.088 3.037 23.324 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.310 5.310 3 C 0.126 3.874 4 C -0.573 4.573 5 H 0.078 0.922 6 C -0.140 4.140 7 N -0.532 5.532 8 Si 0.724 3.276 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.200 1.200 12 C 0.148 3.852 13 C -0.251 4.251 14 C -0.060 4.060 15 C -0.157 4.157 16 C -0.076 4.076 17 N -0.046 5.046 18 N -0.269 5.269 19 C 0.095 3.905 20 N -0.187 5.187 21 C -0.117 4.117 22 C -0.130 4.130 23 N -0.199 5.199 24 C -0.069 4.069 25 C 0.274 3.726 26 O -0.416 6.416 27 C -0.046 4.046 28 C -0.218 4.218 29 H 0.057 0.943 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.050 0.950 33 H 0.057 0.943 34 H 0.075 0.925 35 H 0.137 0.863 36 H 0.133 0.867 37 H 0.125 0.875 38 H 0.239 0.761 39 H 0.189 0.811 40 H 0.181 0.819 41 H 0.111 0.889 42 H 0.099 0.901 43 H 0.099 0.901 44 H 0.145 0.855 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 9.797 -20.028 3.089 22.509 hybrid contribution -0.076 -1.269 -1.044 1.645 sum 9.721 -21.297 2.045 23.500 Atomic orbital electron populations 1.21542 0.81247 1.02199 0.99978 1.47235 1.04680 1.04851 1.74220 1.19368 0.92245 0.78579 0.97211 1.21501 1.36774 1.06509 0.92469 0.92231 1.24953 0.95321 0.96263 0.97448 1.69911 1.38105 1.14374 1.30852 0.86571 0.78429 0.77907 0.84650 1.20271 1.21184 1.20001 1.18168 0.91639 0.86034 0.89332 1.20460 0.99212 0.91083 1.14382 1.20712 0.92290 0.97049 0.95951 1.17813 0.92119 0.90054 1.15724 1.24421 0.90339 0.97638 0.95152 1.75121 1.08978 1.04590 1.15907 1.44847 1.01392 1.05287 1.75359 1.20499 0.84940 0.87813 0.97213 1.67670 1.08395 1.26268 1.16398 1.21691 0.88448 0.97569 1.04000 1.22532 1.00027 0.84005 1.06433 1.45089 1.06612 1.08205 1.59966 1.22125 0.95547 0.84914 1.04328 1.18894 0.82061 0.90109 0.81516 1.90938 1.67672 1.30768 1.52181 1.21102 0.99792 0.90675 0.92996 1.20896 0.92445 0.99097 1.09402 0.94270 0.91231 0.92422 0.94993 0.94308 0.92528 0.86343 0.86693 0.87494 0.76105 0.81132 0.81889 0.88915 0.90128 0.90132 0.85457 0.84600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.56 10.18 59.85 0.61 2.17 16 2 N -0.61 -12.46 2.99 -180.94 -0.54 -13.00 16 3 C 0.25 6.00 4.90 -5.19 -0.03 5.97 16 4 C -0.53 -14.30 9.39 -34.44 -0.32 -14.63 16 5 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 6 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 7 N -0.89 -25.35 13.29 55.43 0.74 -24.61 16 8 Si 0.90 21.19 29.54 -169.99 -5.02 16.17 16 9 H -0.28 -6.46 7.11 56.52 0.40 -6.05 16 10 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 11 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 12 C 0.26 5.02 6.56 -83.73 -0.55 4.47 16 13 C -0.23 -3.68 9.19 -39.45 -0.36 -4.04 16 14 C -0.04 -0.55 9.78 -39.18 -0.38 -0.94 16 15 C -0.15 -2.37 5.87 -105.02 -0.62 -2.98 16 16 C 0.13 1.84 10.75 -14.66 -0.16 1.68 16 17 N -0.24 -3.73 10.21 32.16 0.33 -3.40 16 18 N -0.54 -7.60 6.42 32.57 0.21 -7.39 16 19 C 0.36 5.02 7.85 -152.83 -1.20 3.82 16 20 N -0.46 -6.54 10.03 -11.06 -0.11 -6.65 16 21 C 0.02 0.22 11.02 -18.09 -0.20 0.03 16 22 C 0.00 -0.03 10.33 -16.67 -0.17 -0.20 16 23 N -0.48 -4.28 3.02 -124.83 -0.38 -4.65 16 24 C 0.07 0.37 10.22 59.85 0.61 0.98 16 25 C 0.48 6.05 7.66 -12.65 -0.10 5.95 16 26 O -0.54 -7.69 16.71 4.98 0.08 -7.61 16 27 C -0.02 -0.44 9.57 -39.18 -0.37 -0.81 16 28 C -0.20 -3.92 9.19 -39.44 -0.36 -4.28 16 29 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 1.18 8.07 -51.93 -0.42 0.76 16 31 H 0.06 0.83 6.18 -51.93 -0.32 0.51 16 32 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 33 H 0.04 1.00 6.18 -51.93 -0.32 0.68 16 34 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 35 H 0.12 1.67 6.12 -52.49 -0.32 1.35 16 36 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 37 H 0.11 1.11 8.02 -52.49 -0.42 0.69 16 38 H 0.40 4.77 8.24 -182.60 -1.50 3.27 16 39 H 0.17 1.24 8.06 -52.49 -0.42 0.82 16 40 H 0.16 0.48 7.87 -52.49 -0.41 0.06 16 41 H 0.09 0.17 7.78 -51.93 -0.40 -0.24 16 42 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 43 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 44 H 0.13 2.28 7.55 -52.49 -0.40 1.89 16 45 H 0.14 3.00 6.12 -52.49 -0.32 2.68 16 LS Contribution 388.29 15.07 5.85 5.85 Total: -1.00 -33.57 388.29 -9.46 -43.03 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -6.92 Total: 3.46 kcal Atomic # 6 Polarization: 2.50 SS G_CDS: -3.70 Total: -1.20 kcal Atomic # 7 Polarization: -59.96 SS G_CDS: 0.25 Total: -59.71 kcal Atomic # 8 Polarization: -7.69 SS G_CDS: 0.08 Total: -7.61 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -33.57 -9.46 -43.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000748078932.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.622 kcal (2) G-P(sol) polarization free energy of solvation -33.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.031 kcal (6) G-S(sol) free energy of system = (1) + (5) 99.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds