Wall clock time and date at job start Sat Apr 11 2020 06:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47298 * 331.80100 * 3 2 1 5 5 C 1.46499 * 119.99816 * 269.99986 * 4 3 2 6 6 C 1.38806 * 119.99712 * 89.99583 * 4 3 2 7 7 C 1.39531 * 119.99120 * 184.97505 * 6 4 3 8 8 N 1.31712 * 120.00670 * 179.70364 * 7 6 4 9 9 C 1.33070 * 120.00479 * 0.60099 * 8 7 6 10 10 C 1.48371 * 120.00919 * 179.70007 * 9 8 7 11 11 N 1.30775 * 126.41732 * 179.70351 * 10 9 8 12 12 O 1.21296 * 110.08978 * 180.02562 * 11 10 9 13 13 C 1.33667 * 110.03244 * 359.97438 * 12 11 10 14 14 C 1.50706 * 126.43559 * 179.97438 * 13 12 11 15 15 C 1.52999 * 109.46953 * 270.02947 * 14 13 12 16 16 C 1.53006 * 109.46623 * 179.97438 * 15 14 13 17 17 C 1.52999 * 109.46626 * 179.97438 * 16 15 14 18 18 C 1.50706 * 109.46957 * 180.02562 * 17 16 15 19 19 H 1.07999 * 119.99816 * 0.02562 * 18 17 16 20 20 C 1.37876 * 120.00340 * 180.02562 * 18 17 16 21 21 N 1.31514 * 119.99773 * 359.97438 * 20 18 17 22 22 Si 1.86800 * 120.00296 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47118 * 89.99310 * 22 20 18 24 24 H 1.48494 * 109.47201 * 209.99478 * 22 20 18 25 25 H 1.48498 * 109.47011 * 329.99452 * 22 20 18 26 26 N 1.30968 * 107.13122 * 0.24419 * 13 12 11 27 27 C 1.39248 * 119.98638 * 359.42176 * 9 8 7 28 28 N 1.32084 * 119.99338 * 0.27498 * 27 9 8 29 29 H 4.40641 * 5.51437 * 179.97438 * 4 1 2 30 30 H 1.08994 * 109.46991 * 211.79772 * 3 2 1 31 31 H 1.09004 * 109.46484 * 91.80312 * 3 2 1 32 32 H 1.08997 * 109.46840 * 269.99854 * 5 4 3 33 33 H 1.08995 * 109.47077 * 30.00147 * 5 4 3 34 34 H 1.09003 * 109.46846 * 150.00398 * 5 4 3 35 35 H 1.08001 * 119.99899 * 359.97438 * 7 6 4 36 36 H 1.09000 * 109.46974 * 150.02695 * 14 13 12 37 37 H 1.09001 * 109.46547 * 30.02785 * 14 13 12 38 38 H 1.09000 * 109.47486 * 60.00062 * 15 14 13 39 39 H 1.09001 * 109.47362 * 299.99339 * 15 14 13 40 40 H 1.08993 * 109.46955 * 300.00075 * 16 15 14 41 41 H 1.09000 * 109.47050 * 59.99904 * 16 15 14 42 42 H 1.08993 * 109.47839 * 299.99931 * 17 16 15 43 43 H 1.09000 * 109.47160 * 60.00369 * 17 16 15 44 44 H 0.97000 * 120.00540 * 180.02562 * 21 20 18 45 45 H 1.08001 * 119.99926 * 180.30016 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1349 -1.2164 0.6527 5 6 3.3791 -1.2253 2.0971 6 6 3.3667 -2.3610 -0.0976 7 6 3.7323 -3.5487 0.5369 8 7 3.9466 -4.6364 -0.1742 9 6 3.8262 -4.5999 -1.4990 10 6 4.0741 -5.8235 -2.3007 11 7 3.9870 -5.9305 -3.6011 12 8 4.2513 -7.0634 -3.9446 13 6 4.5406 -7.8105 -2.8746 14 6 4.9193 -9.2692 -2.8774 15 6 3.6563 -10.1242 -2.7552 16 6 4.0408 -11.6051 -2.7587 17 6 2.7779 -12.4601 -2.6359 18 6 3.1566 -13.9188 -2.6387 19 1 4.1942 -14.2071 -2.7195 20 6 2.1784 -14.8852 -2.5380 21 7 0.9149 -14.5340 -2.4391 22 14 2.6478 -16.6932 -2.5408 23 1 2.8883 -17.1443 -1.1465 24 1 1.5450 -17.4901 -3.1356 25 1 3.8835 -16.8826 -3.3423 26 7 4.4276 -7.0383 -1.8229 27 6 3.4618 -3.4145 -2.1322 28 7 3.2411 -2.3253 -1.4183 29 1 -1.0498 -0.0003 0.0004 30 1 3.0089 0.8742 0.5415 31 1 3.0092 0.0332 -1.0272 32 1 4.4084 -0.9252 2.2934 33 1 2.6980 -0.5282 2.5851 34 1 3.2127 -2.2294 2.4875 35 1 3.8352 -3.5772 1.6116 36 1 5.5800 -9.4747 -2.0352 37 1 5.4321 -9.5096 -3.8087 38 1 2.9955 -9.9187 -3.5974 39 1 3.1435 -9.8838 -1.8239 40 1 4.5534 -11.8452 -3.6901 41 1 4.7018 -11.8109 -1.9168 42 1 2.2656 -12.2199 -1.7043 43 1 2.1166 -12.2544 -3.4776 44 1 0.2266 -15.2138 -2.3679 45 1 3.3593 -3.3858 -3.2070 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000842504489.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:58 Heat of formation + Delta-G solvation = 173.226471 kcal Electronic energy + Delta-G solvation = -26899.816991 eV Core-core repulsion = 22922.709061 eV Total energy + Delta-G solvation = -3977.107930 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -45.54177 -41.50431 -38.03602 -36.19792 -35.52572 -34.44959 -33.77783 -33.36458 -32.16282 -30.78658 -29.34833 -28.95122 -26.88083 -25.82469 -24.82538 -24.07352 -23.16578 -22.33690 -21.15225 -20.14851 -19.05911 -18.32927 -18.05971 -17.90620 -17.50376 -16.48974 -16.19515 -16.08210 -15.32423 -15.19922 -15.06500 -14.78516 -14.59706 -14.30217 -13.96213 -13.69421 -13.53076 -12.99254 -12.89386 -12.72830 -12.33978 -12.22021 -12.03235 -11.88021 -11.68624 -11.45695 -11.09147 -11.05399 -11.00264 -10.72400 -10.64022 -10.62379 -10.55371 -10.49693 -10.00670 -9.68060 -9.51830 -9.28841 -9.02572 -8.32323 -8.24781 -5.97262 -3.99753 0.20765 0.73889 1.26697 1.77125 2.29433 2.37587 2.71434 2.80625 3.12160 3.34062 3.40300 3.43373 3.44890 3.61996 3.80991 3.93233 3.98578 4.33245 4.48015 4.49012 4.57926 4.73142 4.82904 4.95769 4.99867 5.04805 5.15320 5.21703 5.26644 5.38431 5.39704 5.47117 5.64656 5.80367 5.90590 6.03558 6.08617 6.10661 6.38779 6.46431 6.71511 6.86588 7.02367 7.13360 7.13767 7.41982 7.70605 7.84725 8.02988 8.10423 8.44847 9.07732 9.64319 11.14062 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.018689 B = 0.001571 C = 0.001525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1497.808109 B =17821.801965 C =18358.674015 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.211 4.211 3 C 0.233 3.767 4 N -0.595 5.595 5 C 0.087 3.913 6 C 0.365 3.635 7 C 0.005 3.995 8 N -0.361 5.361 9 C 0.079 3.921 10 C 0.226 3.774 11 N -0.378 5.378 12 O 0.083 5.917 13 C 0.200 3.800 14 C -0.031 4.031 15 C -0.116 4.116 16 C -0.108 4.108 17 C 0.019 3.981 18 C -0.521 4.521 19 H 0.056 0.944 20 C 0.056 3.944 21 N -0.896 5.896 22 Si 0.892 3.108 23 H -0.281 1.281 24 H -0.287 1.287 25 H -0.274 1.274 26 N -0.458 5.458 27 C 0.150 3.850 28 N -0.497 5.497 29 H 0.217 0.783 30 H 0.102 0.898 31 H 0.112 0.888 32 H 0.065 0.935 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.175 0.825 36 H 0.111 0.889 37 H 0.103 0.897 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.052 0.948 41 H 0.052 0.948 42 H 0.016 0.984 43 H 0.016 0.984 44 H 0.260 0.740 45 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.152 32.773 6.056 33.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.212 4.212 3 C 0.111 3.889 4 N -0.308 5.308 5 C -0.055 4.055 6 C 0.126 3.874 7 C -0.166 4.166 8 N -0.075 5.075 9 C -0.061 4.061 10 C -0.045 4.045 11 N -0.087 5.087 12 O 0.022 5.978 13 C -0.020 4.020 14 C -0.069 4.069 15 C -0.155 4.155 16 C -0.146 4.146 17 C -0.018 4.018 18 C -0.559 4.559 19 H 0.074 0.926 20 C -0.145 4.145 21 N -0.535 5.535 22 Si 0.720 3.280 23 H -0.207 1.207 24 H -0.213 1.213 25 H -0.199 1.199 26 N -0.191 5.191 27 C -0.013 4.013 28 N -0.218 5.218 29 H 0.234 0.766 30 H 0.120 0.880 31 H 0.130 0.870 32 H 0.083 0.917 33 H 0.097 0.903 34 H 0.096 0.904 35 H 0.192 0.808 36 H 0.129 0.871 37 H 0.121 0.879 38 H 0.084 0.916 39 H 0.086 0.914 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.034 0.966 43 H 0.035 0.965 44 H 0.070 0.930 45 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 5.776 33.593 6.079 34.624 hybrid contribution -0.226 -1.142 0.032 1.165 sum 5.550 32.451 6.111 33.484 Atomic orbital electron populations 1.25032 0.96050 0.98608 1.00342 1.23621 0.95033 1.01689 1.00906 1.18325 0.83533 0.86441 1.00639 1.46336 1.68301 1.08948 1.07168 1.21916 1.01873 1.03846 0.77890 1.19558 0.90649 0.87735 0.89455 1.23255 1.04992 0.86975 1.01414 1.68101 1.06151 1.27732 1.05489 1.18425 1.07399 0.90400 0.89845 1.23037 1.01360 0.92818 0.87313 1.74827 1.20596 0.99015 1.14221 1.85280 1.61743 1.14583 1.36217 1.29227 0.94088 0.98729 0.79962 1.20572 1.01048 0.79474 1.05854 1.21749 0.94596 0.96308 1.02838 1.21630 1.01064 0.91133 1.00758 1.19109 0.91767 0.93645 0.97289 1.21268 0.93135 0.91438 1.50063 0.92614 1.25035 0.95012 0.99096 0.95395 1.69966 0.99632 1.33399 1.50508 0.86600 0.78073 0.85201 0.78160 1.20703 1.21289 1.19863 1.72161 1.19011 1.00032 1.27868 1.23376 0.90377 0.86381 1.01197 1.68039 1.19743 1.29345 1.04705 0.76617 0.88035 0.86999 0.91686 0.90269 0.90421 0.80841 0.87125 0.87913 0.91614 0.91415 0.92878 0.92892 0.96556 0.96542 0.93037 0.80555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.32 19.25 29.55 0.57 -0.75 16 2 C -0.21 -1.63 13.68 -37.12 -0.51 -2.14 16 3 C 0.23 1.36 5.95 -6.83 -0.04 1.32 16 4 N -0.60 -3.90 2.94 -184.93 -0.54 -4.44 16 5 C 0.09 0.28 10.29 59.85 0.62 0.89 16 6 C 0.37 3.45 7.37 -154.79 -1.14 2.31 16 7 C 0.01 0.05 10.42 -17.12 -0.18 -0.13 16 8 N -0.36 -4.84 10.43 -9.40 -0.10 -4.94 16 9 C 0.08 1.08 6.75 -82.78 -0.56 0.52 16 10 C 0.23 3.43 7.91 -156.11 -1.24 2.19 16 11 N -0.38 -5.52 11.84 30.97 0.37 -5.15 16 12 O 0.08 1.17 11.29 18.04 0.20 1.37 16 13 C 0.20 2.82 7.75 -12.98 -0.10 2.72 16 14 C -0.03 -0.38 5.84 -27.88 -0.16 -0.54 16 15 C -0.12 -1.83 5.20 -26.73 -0.14 -1.97 16 16 C -0.11 -2.06 5.15 -26.73 -0.14 -2.20 16 17 C 0.02 0.48 4.97 -27.88 -0.14 0.34 16 18 C -0.52 -14.64 9.11 -34.44 -0.31 -14.95 16 19 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 20 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 21 N -0.90 -27.08 13.29 55.43 0.74 -26.34 16 22 Si 0.89 21.64 29.54 -169.99 -5.02 16.61 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 26 N -0.46 -7.34 11.57 -9.88 -0.11 -7.45 16 27 C 0.15 1.71 10.86 -17.07 -0.19 1.53 16 28 N -0.50 -5.37 9.23 -11.99 -0.11 -5.48 16 29 H 0.22 0.94 7.80 -54.10 -0.42 0.52 16 30 H 0.10 0.30 8.07 -51.93 -0.42 -0.12 16 31 H 0.11 0.73 7.31 -51.93 -0.38 0.35 16 32 H 0.06 0.12 8.14 -51.93 -0.42 -0.30 16 33 H 0.08 0.17 8.07 -51.93 -0.42 -0.25 16 34 H 0.08 0.21 5.99 -51.93 -0.31 -0.10 16 35 H 0.17 1.14 6.03 -52.49 -0.32 0.83 16 36 H 0.11 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 39 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 40 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 44 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 45 H 0.18 1.74 7.86 -52.49 -0.41 1.33 16 LS Contribution 397.87 15.07 6.00 6.00 Total: -1.00 -35.38 397.87 -8.36 -43.74 By element: Atomic # 1 Polarization: 1.46 SS G_CDS: -6.03 Total: -4.57 kcal Atomic # 6 Polarization: -5.59 SS G_CDS: -3.75 Total: -9.35 kcal Atomic # 7 Polarization: -54.04 SS G_CDS: 0.24 Total: -53.81 kcal Atomic # 8 Polarization: 1.17 SS G_CDS: 0.20 Total: 1.37 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.61 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -35.38 -8.36 -43.74 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000842504489.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 216.968 kcal (2) G-P(sol) polarization free energy of solvation -35.379 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 181.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 173.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds