Wall clock time and date at job start Sat Apr 11 2020 06:23:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34231 * 116.99822 * 2 1 4 4 O 1.20827 * 119.99916 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00239 * 180.02562 * 3 2 1 6 6 C 1.52992 * 109.47525 * 180.02562 * 5 3 2 7 7 N 1.46495 * 109.47425 * 179.97438 * 6 5 3 8 8 C 1.36817 * 119.99910 * 273.95843 * 7 6 5 9 9 H 1.08002 * 120.00198 * 135.92413 * 8 7 6 10 10 C 1.39077 * 120.00184 * 315.93347 * 8 7 6 11 11 N 1.31349 * 120.00520 * 172.05168 * 10 8 7 12 12 Si 1.86805 * 119.99491 * 352.04654 * 10 8 7 13 13 H 1.48501 * 109.47161 * 95.02999 * 12 10 8 14 14 H 1.48505 * 109.47006 * 215.02785 * 12 10 8 15 15 H 1.48494 * 109.47547 * 335.02646 * 12 10 8 16 16 C 1.34780 * 120.00425 * 93.95737 * 7 6 5 17 17 O 1.21662 * 119.99804 * 359.97438 * 16 7 6 18 18 C 1.46952 * 120.00165 * 180.27820 * 16 7 6 19 19 C 1.33115 * 119.99973 * 186.99096 * 18 16 7 20 20 C 1.50700 * 120.00034 * 14.32688 * 19 18 16 21 21 O 1.42902 * 109.47008 * 136.12983 * 20 19 18 22 22 C 1.42907 * 113.99858 * 180.02562 * 21 20 19 23 23 C 1.53170 * 109.54278 * 269.55282 * 22 21 20 24 24 C 1.53088 * 109.16613 * 183.15256 * 23 22 21 25 25 O 1.42904 * 109.41625 * 57.60717 * 24 23 22 26 26 C 1.42905 * 114.09824 * 298.85112 * 25 24 23 27 27 C 1.53084 * 109.41835 * 61.15092 * 26 25 24 28 28 H 1.08999 * 109.47173 * 59.99831 * 1 2 3 29 29 H 1.08995 * 109.46580 * 180.02562 * 1 2 3 30 30 H 1.08995 * 109.46718 * 300.00115 * 1 2 3 31 31 H 1.08995 * 109.47117 * 59.99237 * 5 3 2 32 32 H 1.09005 * 109.46806 * 300.00068 * 5 3 2 33 33 H 1.09000 * 109.47188 * 59.99225 * 6 5 3 34 34 H 1.09005 * 109.46657 * 299.99531 * 6 5 3 35 35 H 0.96996 * 119.99865 * 179.97438 * 11 10 8 36 36 H 1.08005 * 119.99885 * 6.98620 * 18 16 7 37 37 H 1.07999 * 120.00129 * 194.32834 * 19 18 16 38 38 H 1.09001 * 109.47150 * 256.12765 * 20 19 18 39 39 H 1.08995 * 109.47163 * 16.12990 * 20 19 18 40 40 H 1.09004 * 109.54311 * 29.82230 * 22 21 20 41 41 H 1.09007 * 109.52493 * 303.06035 * 23 22 21 42 42 H 1.09005 * 109.52466 * 63.24704 * 23 22 21 43 43 H 1.08998 * 109.48097 * 297.62891 * 24 23 22 44 44 H 1.09001 * 109.48677 * 177.59050 * 24 23 22 45 45 H 1.09001 * 109.47361 * 301.16786 * 26 25 24 46 46 H 1.09000 * 109.49336 * 181.14736 * 26 25 24 47 47 H 1.09000 * 109.52511 * 182.48770 * 27 26 25 48 48 H 1.09000 * 109.52218 * 62.30051 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2750 -0.0006 6 6 4.0001 2.7421 0.0002 7 7 5.4631 2.8189 0.0002 8 6 6.1505 2.7724 1.1823 9 1 7.0357 2.1598 1.2685 10 6 5.7092 3.5140 2.2730 11 7 6.2722 3.3519 3.4485 12 14 4.3157 4.7408 2.0659 13 1 3.0298 4.0962 2.4351 14 1 4.5529 5.9125 2.9469 15 1 4.2567 5.1889 0.6515 16 6 6.1319 2.9353 -1.1641 17 8 5.5207 2.9761 -2.2152 18 6 7.5997 3.0061 -1.1644 19 6 8.2536 3.2602 -2.2957 20 6 7.5086 3.7895 -3.4940 21 8 8.2594 4.8480 -4.0923 22 6 7.6375 5.4234 -5.2431 23 6 8.0993 4.6804 -6.5004 24 6 7.4904 5.3527 -7.7336 25 8 7.8763 6.7283 -7.7639 26 6 7.4311 7.4843 -6.6358 27 6 8.0376 6.8975 -5.3586 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3632 -1.0276 0.0005 30 1 -0.3632 0.5138 0.8900 31 1 3.9557 0.7810 -0.8907 32 1 3.9564 0.7807 0.8892 33 1 3.6107 3.2357 0.8906 34 1 3.6100 3.2368 -0.8894 35 1 5.9647 3.8694 4.2091 36 1 8.1480 2.8521 -0.2467 37 1 9.3179 3.0870 -2.3549 38 1 7.3700 2.9875 -4.2191 39 1 6.5357 4.1670 -3.1793 40 1 6.5543 5.3459 -5.1492 41 1 9.1868 4.7159 -6.5658 42 1 7.7701 3.6424 -6.4517 43 1 6.4037 5.2811 -7.6874 44 1 7.8497 4.8545 -8.6340 45 1 6.3437 7.4404 -6.5753 46 1 7.7475 8.5216 -6.7453 47 1 7.6644 7.4451 -4.4932 48 1 9.1238 6.9779 -5.4009 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871338587.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:00 Heat of formation + Delta-G solvation = -179.257571 kcal Electronic energy + Delta-G solvation = -30186.054316 eV Core-core repulsion = 25821.767110 eV Total energy + Delta-G solvation = -4364.287207 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.30224 -39.68767 -39.15915 -37.38206 -36.43712 -35.44856 -33.37847 -32.41207 -31.91697 -31.29169 -30.98676 -27.80423 -26.44062 -25.02819 -24.48406 -23.90040 -23.56449 -21.16191 -20.53278 -20.28860 -18.76778 -17.56605 -17.03881 -16.78790 -16.56392 -16.42964 -16.31043 -16.19900 -15.76857 -15.39889 -15.07485 -14.98250 -14.28002 -14.14802 -13.91776 -13.71794 -13.48618 -13.23819 -13.11216 -12.80998 -12.64234 -12.43566 -12.40232 -12.24307 -12.01055 -11.76071 -11.49822 -11.47770 -11.34733 -11.17362 -10.91148 -10.83194 -10.71284 -10.48253 -10.31896 -10.20797 -9.86799 -9.84941 -9.51618 -9.26151 -8.72909 -8.59936 -7.89032 -6.56965 -4.31901 1.91807 2.43492 2.85542 3.05828 3.18647 3.24238 3.63534 3.80600 4.02129 4.14849 4.28753 4.63328 4.71037 4.81252 4.83507 5.01968 5.04544 5.06070 5.11641 5.17928 5.28011 5.31131 5.41874 5.44837 5.46934 5.47855 5.58045 5.60074 5.68731 5.72158 5.83240 5.87419 5.94539 6.03548 6.05630 6.10676 6.19851 6.35193 6.43409 6.56139 6.86713 6.97590 7.02025 7.23178 7.49184 7.91304 7.95038 8.07925 8.78852 9.14063 9.46887 10.51741 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.010619 B = 0.002840 C = 0.002502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2636.125384 B = 9855.832977 C =11188.205347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.362 6.362 3 C 0.467 3.533 4 O -0.511 6.511 5 C -0.123 4.123 6 C 0.114 3.886 7 N -0.455 5.455 8 C -0.350 4.350 9 H 0.110 0.890 10 C 0.071 3.929 11 N -0.861 5.861 12 Si 0.881 3.119 13 H -0.271 1.271 14 H -0.288 1.288 15 H -0.261 1.261 16 C 0.508 3.492 17 O -0.593 6.593 18 C -0.153 4.153 19 C -0.108 4.108 20 C 0.076 3.924 21 O -0.386 6.386 22 C 0.092 3.908 23 C -0.178 4.178 24 C 0.064 3.936 25 O -0.385 6.385 26 C 0.064 3.936 27 C -0.154 4.154 28 H 0.060 0.940 29 H 0.098 0.902 30 H 0.061 0.939 31 H 0.107 0.893 32 H 0.117 0.883 33 H 0.067 0.933 34 H 0.084 0.916 35 H 0.278 0.722 36 H 0.142 0.858 37 H 0.121 0.879 38 H 0.052 0.948 39 H 0.099 0.901 40 H 0.062 0.938 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.051 0.949 44 H 0.095 0.905 45 H 0.052 0.948 46 H 0.098 0.902 47 H 0.081 0.919 48 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.733 -0.662 -13.032 13.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.278 6.278 3 C 0.310 3.690 4 O -0.399 6.399 5 C -0.162 4.162 6 C -0.009 4.009 7 N -0.174 5.174 8 C -0.478 4.478 9 H 0.127 0.873 10 C -0.138 4.138 11 N -0.496 5.496 12 Si 0.710 3.290 13 H -0.197 1.197 14 H -0.215 1.215 15 H -0.186 1.186 16 C 0.301 3.699 17 O -0.481 6.481 18 C -0.173 4.173 19 C -0.128 4.128 20 C 0.001 3.999 21 O -0.305 6.305 22 C 0.033 3.967 23 C -0.216 4.216 24 C -0.013 4.013 25 O -0.304 6.304 26 C -0.013 4.013 27 C -0.191 4.191 28 H 0.079 0.921 29 H 0.116 0.884 30 H 0.079 0.921 31 H 0.126 0.874 32 H 0.135 0.865 33 H 0.085 0.915 34 H 0.102 0.898 35 H 0.088 0.912 36 H 0.160 0.840 37 H 0.139 0.861 38 H 0.070 0.930 39 H 0.116 0.884 40 H 0.080 0.920 41 H 0.098 0.902 42 H 0.094 0.906 43 H 0.069 0.931 44 H 0.113 0.887 45 H 0.070 0.930 46 H 0.116 0.884 47 H 0.099 0.901 48 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.991 -0.161 -13.350 13.499 hybrid contribution -1.245 0.242 0.605 1.405 sum -3.236 0.080 -12.745 13.150 Atomic orbital electron populations 1.23210 0.77026 1.03291 1.02411 1.86538 1.22983 1.33935 1.84392 1.24017 0.92328 0.81053 0.71617 1.90647 1.67382 1.36359 1.45497 1.21798 0.86133 1.01662 1.06561 1.21437 0.83680 0.93141 1.02631 1.43577 1.03600 1.63670 1.06534 1.19097 1.12710 1.28967 0.86980 0.87275 1.25432 0.97370 0.95882 0.95090 1.69607 1.40974 1.39214 0.99814 0.86837 0.81667 0.81270 0.79229 1.19744 1.21471 1.18578 1.18680 0.88332 0.79540 0.83398 1.90550 1.70376 1.55699 1.31427 1.22852 0.94180 1.02157 0.98120 1.23181 0.99734 0.96639 0.93246 1.22137 0.95557 0.89341 0.92871 1.87848 1.48172 1.51586 1.42941 1.21967 0.96772 0.92536 0.85398 1.22732 1.02839 1.00604 0.95435 1.22559 0.98598 0.81971 0.98200 1.87913 1.78069 1.21004 1.43366 1.22584 0.98153 0.95675 0.84877 1.22290 1.03003 0.95042 0.98797 0.92083 0.88367 0.92060 0.87438 0.86534 0.91495 0.89787 0.91197 0.84022 0.86145 0.92999 0.88366 0.91983 0.90249 0.90616 0.93061 0.88675 0.92991 0.88394 0.90076 0.90196 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.56 101.05 1.07 1.46 16 2 O -0.36 -5.50 10.57 -39.26 -0.41 -5.91 16 3 C 0.47 8.33 7.96 36.01 0.29 8.62 16 4 O -0.51 -10.38 15.73 -18.75 -0.29 -10.68 16 5 C -0.12 -2.24 6.12 -27.89 -0.17 -2.41 16 6 C 0.11 2.48 3.36 -4.05 -0.01 2.47 16 7 N -0.45 -10.35 2.15 -116.21 -0.25 -10.60 16 8 C -0.35 -8.55 8.80 -15.02 -0.13 -8.69 16 9 H 0.11 2.74 7.15 -52.49 -0.38 2.37 16 10 C 0.07 1.80 5.47 -17.45 -0.10 1.70 16 11 N -0.86 -22.90 13.95 55.50 0.77 -22.13 16 12 Si 0.88 20.75 24.64 -169.99 -4.19 16.56 16 13 H -0.27 -6.34 6.94 56.52 0.39 -5.95 16 14 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 15 H -0.26 -6.27 6.73 56.52 0.38 -5.89 16 16 C 0.51 11.11 7.35 -12.73 -0.09 11.02 16 17 O -0.59 -13.39 12.89 5.22 0.07 -13.32 16 18 C -0.15 -2.93 9.28 -37.84 -0.35 -3.28 16 19 C -0.11 -1.83 9.95 -36.09 -0.36 -2.19 16 20 C 0.08 1.29 5.08 36.01 0.18 1.47 16 21 O -0.39 -6.19 9.98 -35.23 -0.35 -6.54 16 22 C 0.09 1.21 2.70 -26.55 -0.07 1.14 16 23 C -0.18 -2.01 5.76 -26.60 -0.15 -2.16 16 24 C 0.06 0.63 6.84 37.20 0.25 0.89 16 25 O -0.38 -4.41 10.77 -35.23 -0.38 -4.79 16 26 C 0.06 0.64 6.84 37.20 0.25 0.89 16 27 C -0.15 -1.77 5.79 -26.59 -0.15 -1.92 16 28 H 0.06 0.68 8.13 -51.93 -0.42 0.25 16 29 H 0.10 0.79 8.14 -51.93 -0.42 0.36 16 30 H 0.06 0.70 8.13 -51.93 -0.42 0.27 16 31 H 0.11 1.83 8.14 -51.93 -0.42 1.40 16 32 H 0.12 2.07 8.14 -51.93 -0.42 1.64 16 33 H 0.07 1.55 2.83 -51.93 -0.15 1.40 16 34 H 0.08 1.87 7.26 -51.93 -0.38 1.50 16 35 H 0.28 6.96 8.31 -40.82 -0.34 6.62 16 36 H 0.14 2.67 6.62 -52.48 -0.35 2.32 16 37 H 0.12 1.75 8.06 -52.49 -0.42 1.33 16 38 H 0.05 0.84 7.99 -51.93 -0.42 0.43 16 39 H 0.10 1.93 5.25 -51.93 -0.27 1.66 16 40 H 0.06 0.84 7.79 -51.93 -0.40 0.44 16 41 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 42 H 0.08 0.83 7.99 -51.93 -0.42 0.41 16 43 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 45 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 48 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 390.26 15.07 5.88 5.88 Total: -1.00 -29.79 390.26 -6.12 -35.91 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -7.41 Total: 6.60 kcal Atomic # 6 Polarization: 8.57 SS G_CDS: 0.45 Total: 9.02 kcal Atomic # 7 Polarization: -33.25 SS G_CDS: 0.52 Total: -32.73 kcal Atomic # 8 Polarization: -39.88 SS G_CDS: -1.37 Total: -41.25 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -4.19 Total: 16.56 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -29.79 -6.12 -35.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871338587.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -143.345 kcal (2) G-P(sol) polarization free energy of solvation -29.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.912 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds