Wall clock time and date at job start Sat Apr 11 2020 06:23:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34231 * 117.00384 * 2 1 4 4 O 1.20826 * 119.99462 * 359.97438 * 3 2 1 5 5 C 1.50693 * 120.00244 * 180.02562 * 3 2 1 6 6 C 1.53002 * 109.47208 * 179.97438 * 5 3 2 7 7 N 1.46499 * 109.47073 * 179.97438 * 6 5 3 8 8 C 1.36824 * 119.99931 * 264.86502 * 7 6 5 9 9 H 1.07990 * 120.00122 * 144.85155 * 8 7 6 10 10 C 1.39071 * 119.99916 * 324.84554 * 8 7 6 11 11 N 1.31354 * 119.99985 * 339.28083 * 10 8 7 12 12 Si 1.86791 * 120.00055 * 159.27826 * 10 8 7 13 13 H 1.48504 * 109.47222 * 59.99959 * 12 10 8 14 14 H 1.48504 * 109.47630 * 179.97438 * 12 10 8 15 15 H 1.48495 * 109.47407 * 300.00286 * 12 10 8 16 16 C 1.34775 * 120.00070 * 84.86248 * 7 6 5 17 17 O 1.21658 * 119.99881 * 0.02562 * 16 7 6 18 18 C 1.46954 * 120.00149 * 179.97438 * 16 7 6 19 19 C 1.33124 * 120.00116 * 180.02562 * 18 16 7 20 20 C 1.50691 * 119.99994 * 179.97438 * 19 18 16 21 21 O 1.42898 * 109.47412 * 134.99828 * 20 19 18 22 22 C 1.42898 * 114.00416 * 179.97438 * 21 20 19 23 23 C 1.53173 * 109.54642 * 209.99843 * 22 21 20 24 24 C 1.53090 * 109.16606 * 183.15212 * 23 22 21 25 25 O 1.42900 * 109.41244 * 57.60998 * 24 23 22 26 26 C 1.42896 * 114.09901 * 298.84293 * 25 24 23 27 27 C 1.53093 * 109.41796 * 61.15920 * 26 25 24 28 28 H 1.09003 * 109.46950 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.47198 * 300.00064 * 1 2 3 30 30 H 1.08995 * 109.47230 * 60.00189 * 1 2 3 31 31 H 1.09002 * 109.47622 * 59.99172 * 5 3 2 32 32 H 1.09009 * 109.46788 * 299.99741 * 5 3 2 33 33 H 1.09005 * 109.46884 * 59.99964 * 6 5 3 34 34 H 1.08997 * 109.46788 * 299.99931 * 6 5 3 35 35 H 0.97001 * 119.99758 * 180.02562 * 11 10 8 36 36 H 1.07997 * 119.99918 * 0.02562 * 18 16 7 37 37 H 1.08003 * 119.99575 * 359.97438 * 19 18 16 38 38 H 1.09006 * 109.47219 * 14.99676 * 20 19 18 39 39 H 1.09000 * 109.47525 * 254.99854 * 20 19 18 40 40 H 1.08999 * 109.61636 * 330.22333 * 22 21 20 41 41 H 1.09005 * 109.52075 * 63.24269 * 23 22 21 42 42 H 1.09008 * 109.52401 * 303.06264 * 23 22 21 43 43 H 1.09004 * 109.47989 * 177.59495 * 24 23 22 44 44 H 1.09001 * 109.48264 * 297.61425 * 24 23 22 45 45 H 1.09000 * 109.48158 * 181.14264 * 26 25 24 46 46 H 1.09000 * 109.47948 * 301.17382 * 26 25 24 47 47 H 1.08998 * 109.52067 * 62.29584 * 27 26 25 48 48 H 1.08999 * 109.52238 * 182.42220 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 -0.0006 6 6 4.0002 2.7420 -0.0011 7 7 5.4632 2.8186 -0.0011 8 6 6.1408 2.9607 1.1791 9 1 7.0993 2.4816 1.3125 10 6 5.5950 3.7223 2.2069 11 7 4.6717 4.6180 1.9415 12 14 6.1750 3.4713 3.9646 13 1 7.6319 3.7461 4.0492 14 1 5.4438 4.3991 4.8646 15 1 5.9110 2.0696 4.3777 16 6 6.1417 2.7490 -1.1635 17 8 5.5392 2.6231 -2.2129 18 6 7.6092 2.8264 -1.1635 19 6 8.2793 2.7582 -2.3117 20 6 9.7841 2.8382 -2.3118 21 8 10.3147 1.8305 -3.1749 22 6 11.7418 1.8199 -3.2477 23 6 12.1809 1.3168 -4.6262 24 6 13.7090 1.2341 -4.6677 25 8 14.1666 0.3730 -3.6232 26 6 13.8262 0.8183 -2.3087 27 6 12.3028 0.8842 -2.1724 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 3.9558 0.7807 -0.8907 32 1 3.9564 0.7805 0.8893 33 1 3.6108 3.2363 0.8890 34 1 3.6102 3.2358 -0.8911 35 1 4.2913 5.1495 2.6584 36 1 8.1440 2.9387 -0.2320 37 1 7.7445 2.6456 -3.2432 38 1 10.1563 2.6821 -1.2992 39 1 10.0958 3.8208 -2.6660 40 1 12.1238 2.8283 -3.0889 41 1 11.8324 2.0076 -5.3940 42 1 11.7576 0.3283 -4.8050 43 1 14.0254 0.8361 -5.6319 44 1 14.1308 2.2296 -4.5294 45 1 14.2270 0.1206 -1.5734 46 1 14.2495 1.8083 -2.1393 47 1 11.8820 -0.1129 -2.3016 48 1 12.0416 1.2646 -1.1849 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871338588.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:23:03 Heat of formation + Delta-G solvation = -195.945258 kcal Electronic energy + Delta-G solvation = -29398.227160 eV Core-core repulsion = 25033.216321 eV Total energy + Delta-G solvation = -4365.010839 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.05402 -39.80259 -38.67384 -37.60347 -36.19310 -35.09912 -33.57348 -32.17327 -31.89144 -31.40288 -30.70328 -27.65007 -26.55641 -25.12251 -24.42899 -23.87968 -23.38116 -20.86786 -20.54159 -19.77001 -18.89753 -17.53442 -17.21260 -16.84291 -16.33898 -16.24363 -16.16825 -16.03855 -15.81705 -15.35500 -15.05697 -14.68927 -14.41803 -14.23725 -13.73535 -13.64672 -13.57362 -13.34275 -13.02170 -12.65989 -12.59382 -12.26925 -12.10462 -11.99024 -11.78421 -11.66284 -11.57400 -11.33740 -11.18634 -11.11026 -10.99543 -10.61840 -10.58667 -10.53903 -10.47466 -10.12072 -10.00929 -9.95703 -9.64330 -9.24670 -8.76043 -8.59851 -7.68238 -6.48849 -4.17178 2.05867 2.66875 3.03418 3.09251 3.15347 3.16190 3.51954 3.68630 3.98863 4.33027 4.49259 4.53819 4.68828 4.72123 4.85034 4.91608 4.92885 5.11449 5.20508 5.24653 5.27852 5.31119 5.34145 5.38466 5.38818 5.40684 5.56155 5.62135 5.65341 5.75229 5.82281 5.88905 5.93519 5.98928 6.00976 6.28192 6.32907 6.72485 6.83053 6.87961 6.94179 7.15386 7.23741 7.26449 7.39735 7.76015 8.17580 8.24603 8.94766 9.37981 9.81273 10.52041 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.011346 B = 0.002308 C = 0.002054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2467.237201 B =12130.432229 C =13629.228515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.366 6.366 3 C 0.467 3.533 4 O -0.505 6.505 5 C -0.125 4.125 6 C 0.126 3.874 7 N -0.425 5.425 8 C -0.349 4.349 9 H 0.095 0.905 10 C 0.044 3.956 11 N -0.849 5.849 12 Si 0.916 3.084 13 H -0.271 1.271 14 H -0.283 1.283 15 H -0.271 1.271 16 C 0.490 3.510 17 O -0.605 6.605 18 C -0.139 4.139 19 C -0.126 4.126 20 C 0.096 3.904 21 O -0.373 6.373 22 C 0.088 3.912 23 C -0.154 4.154 24 C 0.064 3.936 25 O -0.384 6.384 26 C 0.064 3.936 27 C -0.181 4.181 28 H 0.095 0.905 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.099 0.901 32 H 0.104 0.896 33 H 0.119 0.881 34 H 0.065 0.935 35 H 0.274 0.726 36 H 0.126 0.874 37 H 0.125 0.875 38 H 0.056 0.944 39 H 0.059 0.941 40 H 0.061 0.939 41 H 0.080 0.920 42 H 0.082 0.918 43 H 0.098 0.902 44 H 0.051 0.949 45 H 0.097 0.903 46 H 0.050 0.950 47 H 0.082 0.918 48 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.846 -6.367 -4.535 13.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.283 6.283 3 C 0.310 3.690 4 O -0.392 6.392 5 C -0.164 4.164 6 C 0.002 3.998 7 N -0.141 5.141 8 C -0.476 4.476 9 H 0.112 0.888 10 C -0.164 4.164 11 N -0.484 5.484 12 Si 0.742 3.258 13 H -0.196 1.196 14 H -0.208 1.208 15 H -0.196 1.196 16 C 0.282 3.718 17 O -0.492 6.492 18 C -0.160 4.160 19 C -0.146 4.146 20 C 0.020 3.980 21 O -0.293 6.293 22 C 0.030 3.970 23 C -0.192 4.192 24 C -0.013 4.013 25 O -0.302 6.302 26 C -0.013 4.013 27 C -0.219 4.219 28 H 0.114 0.886 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.117 0.883 32 H 0.122 0.878 33 H 0.137 0.863 34 H 0.083 0.917 35 H 0.084 0.916 36 H 0.144 0.856 37 H 0.143 0.857 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.099 0.901 42 H 0.100 0.900 43 H 0.117 0.883 44 H 0.069 0.931 45 H 0.115 0.885 46 H 0.069 0.931 47 H 0.101 0.899 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 10.139 -6.249 -5.026 12.927 hybrid contribution -0.091 0.486 1.324 1.413 sum 10.048 -5.763 -3.702 12.160 Atomic orbital electron populations 1.23168 0.77367 1.03032 1.02335 1.86541 1.22747 1.34403 1.84658 1.24050 0.92355 0.80894 0.71724 1.90651 1.67256 1.36217 1.45064 1.21897 0.85933 1.03287 1.05294 1.21226 0.82002 0.91002 1.05603 1.43309 1.04644 1.60934 1.05242 1.19418 1.06142 1.31444 0.90627 0.88777 1.25440 0.96816 0.93463 1.00639 1.69886 1.26954 1.17802 1.33724 0.86181 0.79077 0.78622 0.81953 1.19594 1.20780 1.19606 1.18491 0.87816 0.81834 0.83708 1.90640 1.70510 1.56446 1.31629 1.22810 0.95073 1.00005 0.98121 1.23077 0.92979 0.99189 0.99383 1.21515 0.92242 0.90671 0.93591 1.87996 1.18995 1.55411 1.66854 1.22048 0.82020 0.97978 0.94944 1.22304 0.96416 1.03696 0.96791 1.22579 0.92636 0.94455 0.91583 1.87934 1.77768 1.49891 1.14644 1.22567 0.93908 1.00084 0.84735 1.22752 0.96530 1.02324 1.00247 0.88614 0.92172 0.92166 0.88256 0.87791 0.86347 0.91663 0.91565 0.85606 0.85668 0.92618 0.92341 0.92138 0.90100 0.89960 0.88346 0.93076 0.88510 0.93123 0.89930 0.90407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.44 10.56 101.05 1.07 1.51 16 2 O -0.37 -6.09 10.57 -39.26 -0.41 -6.50 16 3 C 0.47 9.12 7.96 36.00 0.29 9.40 16 4 O -0.51 -11.12 15.73 -18.75 -0.29 -11.41 16 5 C -0.13 -2.53 6.10 -27.89 -0.17 -2.70 16 6 C 0.13 3.03 4.18 -4.04 -0.02 3.02 16 7 N -0.43 -10.47 2.54 -116.21 -0.30 -10.76 16 8 C -0.35 -8.41 8.53 -15.01 -0.13 -8.54 16 9 H 0.09 2.12 6.66 -52.49 -0.35 1.77 16 10 C 0.04 1.07 4.95 -17.45 -0.09 0.98 16 11 N -0.85 -22.00 11.32 55.50 0.63 -21.38 16 12 Si 0.92 18.54 29.60 -169.99 -5.03 13.50 16 13 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 14 H -0.28 -5.79 7.11 56.52 0.40 -5.39 16 15 H -0.27 -5.42 7.11 56.52 0.40 -5.01 16 16 C 0.49 11.91 7.55 -12.73 -0.10 11.82 16 17 O -0.60 -16.02 15.89 5.23 0.08 -15.93 16 18 C -0.14 -2.81 8.88 -37.83 -0.34 -3.15 16 19 C -0.13 -2.24 9.47 -36.09 -0.34 -2.59 16 20 C 0.10 1.34 6.17 36.00 0.22 1.56 16 21 O -0.37 -5.29 9.98 -35.23 -0.35 -5.64 16 22 C 0.09 0.95 2.70 -26.55 -0.07 0.88 16 23 C -0.15 -1.46 5.79 -26.60 -0.15 -1.61 16 24 C 0.06 0.52 6.84 37.20 0.25 0.77 16 25 O -0.38 -3.90 10.76 -35.23 -0.38 -4.28 16 26 C 0.06 0.55 6.84 37.21 0.25 0.80 16 27 C -0.18 -1.80 5.76 -26.59 -0.15 -1.95 16 28 H 0.10 0.87 8.14 -51.93 -0.42 0.44 16 29 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 30 H 0.06 0.75 8.13 -51.93 -0.42 0.32 16 31 H 0.10 1.99 8.14 -51.93 -0.42 1.56 16 32 H 0.10 1.97 8.14 -51.92 -0.42 1.55 16 33 H 0.12 3.07 5.33 -51.93 -0.28 2.80 16 34 H 0.06 1.69 7.54 -51.93 -0.39 1.30 16 35 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 36 H 0.13 2.37 6.35 -52.49 -0.33 2.04 16 37 H 0.13 2.43 7.49 -52.48 -0.39 2.04 16 38 H 0.06 0.72 7.74 -51.93 -0.40 0.31 16 39 H 0.06 0.72 8.09 -51.93 -0.42 0.30 16 40 H 0.06 0.58 7.79 -51.93 -0.40 0.17 16 41 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.08 0.86 8.14 -51.92 -0.42 0.44 16 43 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 44 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 45 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 46 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 47 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 48 H 0.08 0.74 8.00 -51.93 -0.42 0.32 16 LS Contribution 400.97 15.07 6.04 6.04 Total: -1.00 -31.17 400.97 -7.08 -38.25 By element: Atomic # 1 Polarization: 15.50 SS G_CDS: -7.59 Total: 7.91 kcal Atomic # 6 Polarization: 9.67 SS G_CDS: 0.53 Total: 10.20 kcal Atomic # 7 Polarization: -32.47 SS G_CDS: 0.33 Total: -32.14 kcal Atomic # 8 Polarization: -42.41 SS G_CDS: -1.36 Total: -43.76 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -5.03 Total: 13.50 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -31.17 -7.08 -38.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871338588.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -157.696 kcal (2) G-P(sol) polarization free energy of solvation -31.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -188.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.249 kcal (6) G-S(sol) free energy of system = (1) + (5) -195.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds