Wall clock time and date at job start Sat Apr 11 2020 06:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34235 * 116.99880 * 2 1 4 4 O 1.20829 * 119.99996 * 359.97438 * 3 2 1 5 5 C 1.50698 * 119.99687 * 179.97438 * 3 2 1 6 6 C 1.53002 * 109.46968 * 179.97438 * 5 3 2 7 7 N 1.46500 * 109.46967 * 180.02562 * 6 5 3 8 8 C 1.37099 * 119.99718 * 266.19185 * 7 6 5 9 9 H 1.08003 * 119.99922 * 142.06578 * 8 7 6 10 10 C 1.38957 * 120.00235 * 322.05919 * 8 7 6 11 11 N 1.31402 * 120.00265 * 159.58359 * 10 8 7 12 12 Si 1.86803 * 119.99633 * 339.58920 * 10 8 7 13 13 H 1.48497 * 109.47548 * 95.05346 * 12 10 8 14 14 H 1.48509 * 109.46622 * 215.05269 * 12 10 8 15 15 H 1.48498 * 109.47472 * 335.04906 * 12 10 8 16 16 C 1.34777 * 120.00292 * 86.19381 * 7 6 5 17 17 O 1.21291 * 119.99987 * 6.22617 * 16 7 6 18 18 C 1.50701 * 120.00098 * 186.21871 * 16 7 6 19 19 H 1.09004 * 109.46608 * 32.10119 * 18 16 7 20 20 C 1.52994 * 109.47217 * 272.09718 * 18 16 7 21 21 C 1.53001 * 109.46832 * 180.02562 * 20 18 16 22 22 C 1.53004 * 109.47473 * 59.99647 * 21 20 18 23 23 C 1.52998 * 109.47274 * 300.00377 * 22 21 20 24 24 H 1.09005 * 109.47009 * 300.00036 * 23 22 21 25 25 C 1.50694 * 109.47374 * 179.97438 * 23 22 21 26 26 O 1.20824 * 119.99824 * 239.99918 * 25 23 22 27 27 O 1.34228 * 120.00153 * 59.99767 * 25 23 22 28 28 C 1.45199 * 117.00162 * 180.02562 * 27 25 23 29 29 C 1.53001 * 109.47178 * 59.99443 * 23 22 21 30 30 H 1.09002 * 109.46799 * 59.99852 * 1 2 3 31 31 H 1.08995 * 109.47130 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.46711 * 300.00300 * 1 2 3 33 33 H 1.09008 * 109.46997 * 60.00244 * 5 3 2 34 34 H 1.08999 * 109.47578 * 299.99728 * 5 3 2 35 35 H 1.08996 * 109.47112 * 60.00148 * 6 5 3 36 36 H 1.09007 * 109.47109 * 300.00108 * 6 5 3 37 37 H 0.96995 * 120.00618 * 180.02562 * 11 10 8 38 38 H 1.08995 * 109.47110 * 60.00023 * 20 18 16 39 39 H 1.08997 * 109.47059 * 299.99606 * 20 18 16 40 40 H 1.08997 * 109.47199 * 179.97438 * 21 20 18 41 41 H 1.09002 * 109.47374 * 299.99569 * 21 20 18 42 42 H 1.09001 * 109.46395 * 59.99824 * 22 21 20 43 43 H 1.08997 * 109.47167 * 179.97438 * 22 21 20 44 44 H 1.09002 * 109.47025 * 60.00131 * 28 27 25 45 45 H 1.08997 * 109.47018 * 180.02562 * 28 27 25 46 46 H 1.08992 * 109.47353 * 299.99699 * 28 27 25 47 47 H 1.08997 * 109.46922 * 60.00461 * 29 23 22 48 48 H 1.08997 * 109.47199 * 180.02562 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 0.0006 6 6 4.0002 2.7421 -0.0002 7 7 5.4632 2.8187 -0.0002 8 6 6.1435 2.9339 1.1844 9 1 7.0808 2.4152 1.3215 10 6 5.6273 3.7183 2.2087 11 7 6.0280 3.5303 3.4460 12 14 4.3636 5.0399 1.8268 13 1 2.9983 4.4949 2.0367 14 1 4.5762 6.2026 2.7260 15 1 4.5119 5.4732 0.4142 16 6 6.1402 2.7760 -1.1648 17 8 5.5377 2.7881 -2.2174 18 6 7.6459 2.7133 -1.1592 19 1 7.9833 2.1636 -0.2805 20 6 8.2153 4.1329 -1.1225 21 6 9.7440 4.0692 -1.1174 22 6 10.2291 3.3576 -2.3821 23 6 9.6596 1.9381 -2.4188 24 1 9.9974 1.3882 -1.5403 25 6 10.1368 1.2374 -3.6647 26 8 9.3364 0.8307 -4.4732 27 8 11.4511 1.0651 -3.8761 28 6 11.8383 0.3823 -5.0977 29 6 8.1309 2.0018 -2.4239 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8900 33 1 3.9564 0.7806 -0.8892 34 1 3.9558 0.7810 0.8908 35 1 3.6101 3.2368 0.8893 36 1 3.6108 3.2357 -0.8907 37 1 5.6674 4.0775 4.1611 38 1 7.8694 4.6399 -0.2218 39 1 7.8779 4.6825 -2.0012 40 1 10.1497 5.0805 -1.0917 41 1 10.0819 3.5195 -0.2389 42 1 9.8912 3.9075 -3.2605 43 1 11.3181 3.3127 -2.3786 44 1 11.4742 0.9432 -5.9585 45 1 12.9248 0.3093 -5.1443 46 1 11.4066 -0.6184 -5.1070 47 1 7.7931 2.5515 -3.3023 48 1 7.7252 0.9904 -2.4496 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871342151.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:05 Heat of formation + Delta-G solvation = -215.916797 kcal Electronic energy + Delta-G solvation = -31105.185466 eV Core-core repulsion = 26739.308595 eV Total energy + Delta-G solvation = -4365.876870 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.70135 -40.23044 -39.34245 -37.42082 -36.38827 -36.23706 -35.09512 -32.36915 -31.64297 -30.83524 -30.32069 -27.82972 -27.58104 -24.98747 -24.58312 -23.74582 -22.40202 -20.92265 -20.49336 -19.60987 -19.00588 -17.75810 -17.41208 -16.98601 -16.52971 -16.38716 -16.37948 -16.16540 -15.89661 -15.08533 -14.76662 -14.25788 -14.04860 -13.89898 -13.84902 -13.62997 -13.25560 -13.07373 -12.89118 -12.67614 -12.55170 -12.39712 -12.28628 -12.09787 -11.95450 -11.81361 -11.67914 -11.17851 -11.08832 -10.98324 -10.86315 -10.74910 -10.65756 -10.49890 -10.40759 -10.27082 -10.22117 -9.95923 -9.87739 -9.84683 -9.25041 -8.57425 -7.91134 -6.53873 -4.16706 2.24577 2.50058 2.68821 2.90319 3.08885 3.23534 3.32076 3.64359 4.09879 4.26187 4.64901 4.81072 4.85825 4.95894 4.97872 5.05192 5.13563 5.16590 5.22859 5.26200 5.39531 5.43833 5.48383 5.52147 5.53652 5.59840 5.64244 5.71790 5.79511 5.87329 6.01981 6.04625 6.17649 6.26795 6.29451 6.33958 6.38678 6.47576 6.50968 6.55741 6.63673 6.80173 6.82129 7.26680 7.77946 7.98342 8.01394 8.15374 8.87850 9.26148 9.58311 10.55704 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.011394 B = 0.003450 C = 0.002821 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2456.901054 B = 8114.285193 C = 9923.480966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.362 6.362 3 C 0.467 3.533 4 O -0.511 6.511 5 C -0.123 4.123 6 C 0.114 3.886 7 N -0.466 5.466 8 C -0.349 4.349 9 H 0.110 0.890 10 C 0.072 3.928 11 N -0.858 5.858 12 Si 0.865 3.135 13 H -0.270 1.270 14 H -0.287 1.287 15 H -0.260 1.260 16 C 0.491 3.509 17 O -0.590 6.590 18 C -0.085 4.085 19 H 0.097 0.903 20 C -0.107 4.107 21 C -0.113 4.113 22 C -0.109 4.109 23 C -0.077 4.077 24 H 0.110 0.890 25 C 0.464 3.536 26 O -0.503 6.503 27 O -0.361 6.361 28 C 0.034 3.966 29 C -0.085 4.085 30 H 0.060 0.940 31 H 0.097 0.903 32 H 0.061 0.939 33 H 0.106 0.894 34 H 0.115 0.885 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.276 0.724 38 H 0.083 0.917 39 H 0.060 0.940 40 H 0.067 0.933 41 H 0.070 0.930 42 H 0.066 0.934 43 H 0.072 0.928 44 H 0.061 0.939 45 H 0.098 0.902 46 H 0.061 0.939 47 H 0.079 0.921 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.177 -4.935 -7.456 10.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.279 6.279 3 C 0.310 3.690 4 O -0.398 6.398 5 C -0.162 4.162 6 C -0.010 4.010 7 N -0.186 5.186 8 C -0.476 4.476 9 H 0.127 0.873 10 C -0.136 4.136 11 N -0.492 5.492 12 Si 0.692 3.308 13 H -0.196 1.196 14 H -0.214 1.214 15 H -0.184 1.184 16 C 0.280 3.720 17 O -0.474 6.474 18 C -0.106 4.106 19 H 0.115 0.885 20 C -0.145 4.145 21 C -0.151 4.151 22 C -0.147 4.147 23 C -0.096 4.096 24 H 0.128 0.872 25 C 0.307 3.693 26 O -0.390 6.390 27 O -0.277 6.277 28 C -0.060 4.060 29 C -0.123 4.123 30 H 0.079 0.921 31 H 0.116 0.884 32 H 0.079 0.921 33 H 0.124 0.876 34 H 0.133 0.867 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.086 0.914 38 H 0.102 0.898 39 H 0.078 0.922 40 H 0.086 0.914 41 H 0.089 0.911 42 H 0.085 0.915 43 H 0.091 0.909 44 H 0.079 0.921 45 H 0.117 0.883 46 H 0.080 0.920 47 H 0.098 0.902 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 5.411 -4.711 -8.023 10.763 hybrid contribution -0.954 0.526 -0.033 1.089 sum 4.457 -4.185 -8.056 10.113 Atomic orbital electron populations 1.23204 0.77087 1.03242 1.02391 1.86539 1.22943 1.33998 1.84426 1.24016 0.92328 0.81025 0.71599 1.90648 1.67375 1.36345 1.45469 1.21815 0.86151 1.01853 1.06338 1.21393 0.83463 0.93104 1.03018 1.43720 1.03492 1.65046 1.06354 1.19055 1.08679 1.30565 0.89252 0.87281 1.25268 0.97010 0.96590 0.94691 1.69728 1.42889 1.37573 0.99036 0.87116 0.81637 0.82288 0.79740 1.19637 1.21414 1.18363 1.20390 0.89457 0.78885 0.83220 1.90569 1.70652 1.54682 1.31504 1.21002 0.92949 0.98060 0.98606 0.88459 1.21410 0.94260 0.95550 1.03245 1.21516 0.96120 1.00399 0.97023 1.21549 1.00406 0.92897 0.99806 1.21170 0.98014 0.97179 0.93261 0.87177 1.24037 0.80209 0.76707 0.88358 1.90676 1.55325 1.46789 1.46201 1.86523 1.27021 1.71365 1.42832 1.23222 1.01004 0.96897 0.84836 1.21290 0.90166 1.01850 0.99011 0.92112 0.88411 0.92068 0.87561 0.86697 0.90481 0.90393 0.91405 0.89825 0.92172 0.91447 0.91133 0.91547 0.90912 0.92057 0.88321 0.92043 0.90222 0.91260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.56 101.05 1.07 1.48 16 2 O -0.36 -5.73 10.57 -39.27 -0.41 -6.14 16 3 C 0.47 8.65 7.96 36.00 0.29 8.94 16 4 O -0.51 -10.73 15.73 -18.75 -0.29 -11.02 16 5 C -0.12 -2.31 6.11 -27.88 -0.17 -2.48 16 6 C 0.11 2.53 3.36 -4.04 -0.01 2.51 16 7 N -0.47 -10.54 2.18 -114.81 -0.25 -10.79 16 8 C -0.35 -8.30 8.73 -14.93 -0.13 -8.43 16 9 H 0.11 2.64 6.55 -52.48 -0.34 2.30 16 10 C 0.07 1.81 5.31 -17.47 -0.09 1.72 16 11 N -0.86 -22.41 13.96 55.50 0.77 -21.63 16 12 Si 0.86 20.37 24.94 -169.99 -4.24 16.13 16 13 H -0.27 -6.44 6.68 56.52 0.38 -6.06 16 14 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 15 H -0.26 -6.26 7.11 56.52 0.40 -5.86 16 16 C 0.49 10.70 6.68 -10.98 -0.07 10.63 16 17 O -0.59 -14.24 15.75 5.55 0.09 -14.15 16 18 C -0.09 -1.51 1.85 -91.77 -0.17 -1.68 16 19 H 0.10 1.70 6.41 -51.93 -0.33 1.37 16 20 C -0.11 -1.73 5.15 -26.73 -0.14 -1.86 16 21 C -0.11 -1.41 5.92 -26.73 -0.16 -1.57 16 22 C -0.11 -1.27 5.14 -26.73 -0.14 -1.41 16 23 C -0.08 -1.01 2.63 -91.78 -0.24 -1.25 16 24 H 0.11 1.28 8.14 -51.93 -0.42 0.85 16 25 C 0.46 6.50 7.25 36.00 0.26 6.76 16 26 O -0.50 -8.57 15.73 -18.75 -0.29 -8.86 16 27 O -0.36 -4.29 10.47 -39.25 -0.41 -4.70 16 28 C 0.03 0.31 10.56 101.05 1.07 1.37 16 29 C -0.09 -1.39 3.34 -26.73 -0.09 -1.48 16 30 H 0.06 0.71 8.13 -51.93 -0.42 0.29 16 31 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.06 0.73 8.13 -51.93 -0.42 0.30 16 33 H 0.11 1.91 8.14 -51.92 -0.42 1.49 16 34 H 0.11 2.08 8.14 -51.93 -0.42 1.65 16 35 H 0.08 1.81 3.32 -51.93 -0.17 1.64 16 36 H 0.08 1.81 7.42 -51.92 -0.39 1.42 16 37 H 0.28 6.84 8.31 -40.82 -0.34 6.50 16 38 H 0.08 1.51 7.75 -51.93 -0.40 1.10 16 39 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.07 0.73 8.11 -51.93 -0.42 0.31 16 44 H 0.06 0.55 8.13 -51.93 -0.42 0.12 16 45 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 46 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 47 H 0.08 1.45 7.81 -51.93 -0.41 1.05 16 48 H 0.07 1.19 8.10 -51.93 -0.42 0.77 16 LS Contribution 390.35 15.07 5.88 5.88 Total: -1.00 -31.28 390.35 -5.43 -36.71 By element: Atomic # 1 Polarization: 12.89 SS G_CDS: -7.54 Total: 5.35 kcal Atomic # 6 Polarization: 11.97 SS G_CDS: 1.27 Total: 13.23 kcal Atomic # 7 Polarization: -32.95 SS G_CDS: 0.52 Total: -32.43 kcal Atomic # 8 Polarization: -43.55 SS G_CDS: -1.33 Total: -44.88 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -4.24 Total: 16.13 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -31.28 -5.43 -36.71 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871342151.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -179.205 kcal (2) G-P(sol) polarization free energy of solvation -31.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -210.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -215.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds