Wall clock time and date at job start Sat Apr 11 2020 06:21:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34220 * 117.00344 * 2 1 4 4 O 1.20824 * 120.00136 * 359.97438 * 3 2 1 5 5 C 1.50706 * 119.99968 * 180.02562 * 3 2 1 6 6 C 1.53003 * 109.46805 * 179.97438 * 5 3 2 7 7 N 1.46502 * 109.46844 * 179.97438 * 6 5 3 8 8 C 1.37101 * 120.00229 * 273.10237 * 7 6 5 9 9 H 1.07998 * 120.00220 * 52.04269 * 8 7 6 10 10 C 1.38947 * 119.99879 * 232.04844 * 8 7 6 11 11 N 1.31413 * 120.00020 * 17.91395 * 10 8 7 12 12 Si 1.86798 * 120.00098 * 197.92097 * 10 8 7 13 13 H 1.48497 * 109.47605 * 89.99415 * 12 10 8 14 14 H 1.48496 * 109.47263 * 209.99882 * 12 10 8 15 15 H 1.48506 * 109.46938 * 329.99265 * 12 10 8 16 16 C 1.34775 * 120.00041 * 93.09938 * 7 6 5 17 17 O 1.21300 * 119.99939 * 5.33124 * 16 7 6 18 18 C 1.50697 * 120.00344 * 185.33429 * 16 7 6 19 19 H 1.09000 * 109.47415 * 309.34061 * 18 16 7 20 20 C 1.53003 * 109.47043 * 69.33546 * 18 16 7 21 21 C 1.53000 * 109.47083 * 180.02562 * 20 18 16 22 22 C 1.52997 * 109.46999 * 299.99898 * 21 20 18 23 23 C 1.52998 * 109.47402 * 60.00306 * 22 21 20 24 24 H 1.09002 * 109.46839 * 59.99256 * 23 22 21 25 25 C 1.50700 * 109.47694 * 179.97438 * 23 22 21 26 26 O 1.20824 * 119.99741 * 119.99711 * 25 23 22 27 27 O 1.34223 * 119.99876 * 300.00072 * 25 23 22 28 28 C 1.45199 * 116.99942 * 179.97438 * 27 25 23 29 29 C 1.53000 * 109.46794 * 299.99819 * 23 22 21 30 30 H 1.09005 * 109.47124 * 59.99962 * 1 2 3 31 31 H 1.08993 * 109.47725 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.46826 * 300.00394 * 1 2 3 33 33 H 1.08989 * 109.47516 * 59.99455 * 5 3 2 34 34 H 1.09000 * 109.46755 * 299.99339 * 5 3 2 35 35 H 1.08997 * 109.47329 * 60.00177 * 6 5 3 36 36 H 1.09000 * 109.47090 * 299.99337 * 6 5 3 37 37 H 0.97001 * 120.00105 * 180.02562 * 11 10 8 38 38 H 1.09001 * 109.47180 * 300.00091 * 20 18 16 39 39 H 1.09002 * 109.46832 * 60.00504 * 20 18 16 40 40 H 1.09001 * 109.47179 * 179.97438 * 21 20 18 41 41 H 1.09000 * 109.46932 * 59.99922 * 21 20 18 42 42 H 1.09002 * 109.47731 * 300.00109 * 22 21 20 43 43 H 1.09007 * 109.47204 * 180.02562 * 22 21 20 44 44 H 1.09011 * 109.46743 * 60.00379 * 28 27 25 45 45 H 1.09004 * 109.47257 * 179.97438 * 28 27 25 46 46 H 1.08991 * 109.47508 * 300.00270 * 28 27 25 47 47 H 1.09005 * 109.46857 * 179.97438 * 29 23 22 48 48 H 1.08999 * 109.47452 * 299.99937 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2092 -0.0005 5 6 3.5664 1.2746 -0.0006 6 6 4.0002 2.7419 -0.0011 7 7 5.4632 2.8185 -0.0011 8 6 6.1511 2.7906 1.1846 9 1 5.9639 2.0028 1.8991 10 6 7.0892 3.7760 1.4668 11 7 7.0778 4.9056 0.7954 12 14 8.3665 3.4951 2.8006 13 1 9.5730 2.8658 2.2060 14 1 8.7374 4.7962 3.4127 15 1 7.8043 2.5999 3.8436 16 6 6.1330 2.9163 -1.1665 17 8 5.5232 3.0383 -2.2080 18 6 7.6393 2.8740 -1.1759 19 1 8.0274 3.5891 -0.4506 20 6 8.1123 1.4663 -0.8074 21 6 9.6417 1.4235 -0.8162 22 6 10.1538 1.7845 -2.2120 23 6 9.6809 3.1922 -2.5806 24 1 10.0686 3.9072 -1.8550 25 6 10.1859 3.5480 -3.9551 26 8 9.4029 3.8090 -4.8375 27 8 11.5055 3.5751 -4.1991 28 6 11.9198 3.9255 -5.5459 29 6 8.1516 3.2349 -2.5717 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 3.9558 0.7807 -0.8907 34 1 3.9564 0.7804 0.8892 35 1 3.6109 3.2362 0.8889 36 1 3.6103 3.2357 -0.8911 37 1 7.7329 5.5934 0.9922 38 1 7.7477 1.2093 0.1872 39 1 7.7242 0.7512 -1.5327 40 1 9.9786 0.4208 -0.5533 41 1 10.0293 2.1387 -0.0907 42 1 9.7661 1.0694 -2.9376 43 1 11.2434 1.7536 -2.2185 44 1 11.5564 4.9240 -5.7896 45 1 13.0080 3.9105 -5.6068 46 1 11.5061 3.2059 -6.2522 47 1 7.8147 4.2379 -2.8338 48 1 7.7638 2.5198 -3.2972 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871342152.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:08 Heat of formation + Delta-G solvation = -220.998100 kcal Electronic energy + Delta-G solvation = -31428.123531 eV Core-core repulsion = 27062.026319 eV Total energy + Delta-G solvation = -4366.097212 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.52482 -40.17955 -39.08771 -37.11027 -36.30182 -36.09957 -34.78504 -32.78921 -31.02578 -30.35962 -30.10994 -27.71114 -27.49657 -25.08270 -24.10135 -23.51844 -22.07244 -20.73877 -20.31517 -19.68476 -18.96285 -17.60259 -17.33388 -16.89361 -16.33577 -16.31933 -16.25819 -15.99661 -15.15521 -14.91584 -14.62569 -14.20651 -13.98758 -13.76301 -13.71371 -13.54172 -13.13981 -12.91905 -12.82193 -12.41013 -12.38123 -12.16896 -12.09485 -11.94121 -11.70145 -11.46913 -11.32321 -11.19254 -11.09694 -10.80442 -10.74513 -10.65933 -10.65337 -10.52900 -10.32050 -10.22903 -10.17949 -10.10175 -9.82658 -9.59570 -8.78019 -8.20173 -7.41664 -6.48895 -4.30391 2.41222 2.52558 2.84693 2.94264 3.05161 3.15635 3.16612 3.97175 4.12605 4.71888 4.82895 4.84410 5.04259 5.08487 5.10178 5.15753 5.15960 5.22125 5.24721 5.40146 5.53513 5.57734 5.62544 5.63492 5.70324 5.79252 5.86786 5.97217 6.03919 6.10012 6.13562 6.28444 6.42890 6.50187 6.54229 6.58417 6.60835 6.68937 6.83443 6.84938 6.93068 7.11973 7.27660 7.36465 7.85895 7.94551 8.04078 8.57124 8.85572 9.53066 9.97492 10.56141 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.011518 B = 0.003494 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2430.411603 B = 8011.127165 C = 9462.698683 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.365 6.365 3 C 0.466 3.534 4 O -0.508 6.508 5 C -0.123 4.123 6 C 0.125 3.875 7 N -0.457 5.457 8 C -0.340 4.340 9 H 0.083 0.917 10 C 0.052 3.948 11 N -0.852 5.852 12 Si 0.900 3.100 13 H -0.266 1.266 14 H -0.283 1.283 15 H -0.267 1.267 16 C 0.526 3.474 17 O -0.603 6.603 18 C -0.099 4.099 19 H 0.125 0.875 20 C -0.108 4.108 21 C -0.116 4.116 22 C -0.107 4.107 23 C -0.078 4.078 24 H 0.107 0.893 25 C 0.464 3.536 26 O -0.502 6.502 27 O -0.362 6.362 28 C 0.034 3.966 29 C -0.079 4.079 30 H 0.060 0.940 31 H 0.096 0.904 32 H 0.060 0.940 33 H 0.101 0.899 34 H 0.105 0.895 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.272 0.728 38 H 0.086 0.914 39 H 0.051 0.949 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.065 0.935 43 H 0.069 0.931 44 H 0.060 0.940 45 H 0.097 0.903 46 H 0.060 0.940 47 H 0.069 0.931 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.230 -7.986 -1.945 9.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.282 6.282 3 C 0.309 3.691 4 O -0.396 6.396 5 C -0.162 4.162 6 C 0.001 3.999 7 N -0.177 5.177 8 C -0.468 4.468 9 H 0.101 0.899 10 C -0.155 4.155 11 N -0.488 5.488 12 Si 0.726 3.274 13 H -0.192 1.192 14 H -0.208 1.208 15 H -0.191 1.191 16 C 0.316 3.684 17 O -0.488 6.488 18 C -0.120 4.120 19 H 0.142 0.858 20 C -0.146 4.146 21 C -0.153 4.153 22 C -0.145 4.145 23 C -0.097 4.097 24 H 0.125 0.875 25 C 0.307 3.693 26 O -0.389 6.389 27 O -0.279 6.279 28 C -0.060 4.060 29 C -0.117 4.117 30 H 0.079 0.921 31 H 0.115 0.885 32 H 0.079 0.921 33 H 0.120 0.880 34 H 0.124 0.876 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.083 0.917 38 H 0.105 0.895 39 H 0.070 0.930 40 H 0.082 0.918 41 H 0.084 0.916 42 H 0.084 0.916 43 H 0.088 0.912 44 H 0.079 0.921 45 H 0.116 0.884 46 H 0.079 0.921 47 H 0.088 0.912 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 4.543 -7.339 -2.752 9.059 hybrid contribution 0.422 0.286 0.521 0.729 sum 4.966 -7.053 -2.231 8.909 Atomic orbital electron populations 1.23185 0.77188 1.03152 1.02377 1.86535 1.22876 1.34277 1.84524 1.24082 0.92424 0.80923 0.71660 1.90649 1.67352 1.36296 1.45267 1.21887 0.85799 1.02960 1.05560 1.21087 0.84614 0.91190 1.03006 1.43231 1.02348 1.66604 1.05506 1.19204 1.20512 1.10003 0.97049 0.89915 1.25555 0.99343 0.93621 0.96962 1.70018 1.33834 1.03974 1.40930 0.86356 0.81490 0.78275 0.81288 1.19175 1.20848 1.19115 1.20229 0.89273 0.76244 0.82615 1.90527 1.70595 1.54767 1.32895 1.21346 0.93794 0.99348 0.97500 0.85781 1.21476 0.94021 0.96013 1.03060 1.21554 0.96840 1.01328 0.95598 1.21528 1.00514 0.93921 0.98510 1.21206 0.98656 0.99911 0.89887 0.87512 1.24119 0.80081 0.73282 0.91845 1.90668 1.56681 1.44374 1.47127 1.86527 1.26670 1.80911 1.33795 1.23204 1.00570 1.01011 0.81199 1.21214 0.89205 1.03370 0.97886 0.92114 0.88530 0.92123 0.88033 0.87635 0.90847 0.90873 0.91715 0.89505 0.93006 0.91757 0.91598 0.91640 0.91224 0.92096 0.88438 0.92119 0.91217 0.91320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.39 10.56 101.05 1.07 1.46 16 2 O -0.37 -5.44 10.56 -39.23 -0.41 -5.86 16 3 C 0.47 8.11 7.96 36.01 0.29 8.40 16 4 O -0.51 -10.15 15.73 -18.75 -0.29 -10.45 16 5 C -0.12 -2.18 6.13 -27.88 -0.17 -2.35 16 6 C 0.13 2.74 4.74 -4.04 -0.02 2.72 16 7 N -0.46 -10.75 2.43 -114.81 -0.28 -11.03 16 8 C -0.34 -7.82 7.20 -14.93 -0.11 -7.93 16 9 H 0.08 1.81 7.89 -52.49 -0.41 1.40 16 10 C 0.05 1.20 3.46 -17.47 -0.06 1.14 16 11 N -0.85 -21.34 11.49 55.50 0.64 -20.71 16 12 Si 0.90 17.63 29.59 -169.99 -5.03 12.60 16 13 H -0.27 -4.93 7.11 56.52 0.40 -4.53 16 14 H -0.28 -5.72 7.11 56.52 0.40 -5.31 16 15 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 16 C 0.53 12.86 6.28 -10.99 -0.07 12.79 16 17 O -0.60 -16.37 15.49 5.54 0.09 -16.29 16 18 C -0.10 -2.08 1.63 -91.77 -0.15 -2.23 16 19 H 0.12 2.79 4.41 -51.93 -0.23 2.56 16 20 C -0.11 -1.91 5.06 -26.73 -0.14 -2.04 16 21 C -0.12 -1.69 5.92 -26.73 -0.16 -1.84 16 22 C -0.11 -1.49 5.14 -26.73 -0.14 -1.62 16 23 C -0.08 -1.26 2.63 -91.77 -0.24 -1.50 16 24 H 0.11 1.65 8.14 -51.93 -0.42 1.23 16 25 C 0.46 7.66 7.26 36.01 0.26 7.92 16 26 O -0.50 -9.79 15.73 -18.75 -0.29 -10.08 16 27 O -0.36 -5.03 10.47 -39.24 -0.41 -5.44 16 28 C 0.03 0.36 10.56 101.05 1.07 1.43 16 29 C -0.08 -1.58 3.12 -26.73 -0.08 -1.67 16 30 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 31 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 33 H 0.10 1.79 8.14 -51.94 -0.42 1.36 16 34 H 0.11 1.69 8.14 -51.93 -0.42 1.27 16 35 H 0.07 1.63 8.02 -51.93 -0.42 1.21 16 36 H 0.07 1.76 7.23 -51.93 -0.38 1.38 16 37 H 0.27 6.46 8.31 -40.82 -0.34 6.12 16 38 H 0.09 1.59 6.54 -51.93 -0.34 1.25 16 39 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 41 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 43 H 0.07 0.83 8.11 -51.93 -0.42 0.41 16 44 H 0.06 0.65 8.14 -51.92 -0.42 0.22 16 45 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 47 H 0.07 1.57 8.10 -51.93 -0.42 1.15 16 48 H 0.07 1.45 7.96 -51.93 -0.41 1.04 16 LS Contribution 392.84 15.07 5.92 5.92 Total: -1.00 -31.04 392.84 -6.39 -37.43 By element: Atomic # 1 Polarization: 16.89 SS G_CDS: -7.66 Total: 9.23 kcal Atomic # 6 Polarization: 13.31 SS G_CDS: 1.35 Total: 14.66 kcal Atomic # 7 Polarization: -32.09 SS G_CDS: 0.36 Total: -31.73 kcal Atomic # 8 Polarization: -46.78 SS G_CDS: -1.33 Total: -48.11 kcal Atomic # 14 Polarization: 17.63 SS G_CDS: -5.03 Total: 12.60 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -31.04 -6.39 -37.43 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871342152.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -183.569 kcal (2) G-P(sol) polarization free energy of solvation -31.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -214.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -220.998 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds