Wall clock time and date at job start Sat Apr 11 2020 06:21:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45204 * 1 3 3 C 1.34226 * 116.99897 * 2 1 4 4 O 1.20825 * 119.99866 * 359.97438 * 3 2 1 5 5 C 1.50694 * 119.99999 * 180.02562 * 3 2 1 6 6 C 1.53005 * 109.47291 * 179.97438 * 5 3 2 7 7 N 1.46497 * 109.47067 * 180.02562 * 6 5 3 8 8 C 1.37104 * 120.00020 * 90.00117 * 7 6 5 9 9 H 1.07994 * 120.00298 * 306.44865 * 8 7 6 10 10 C 1.38952 * 119.99900 * 126.44942 * 8 7 6 11 11 N 1.31405 * 119.99878 * 170.19797 * 10 8 7 12 12 Si 1.86802 * 120.00097 * 350.19292 * 10 8 7 13 13 H 1.48493 * 109.47339 * 235.45898 * 12 10 8 14 14 H 1.48506 * 109.46912 * 115.45593 * 12 10 8 15 15 H 1.48507 * 109.46808 * 355.46293 * 12 10 8 16 16 C 1.34777 * 120.00157 * 270.00128 * 7 6 5 17 17 O 1.21298 * 119.99930 * 354.82606 * 16 7 6 18 18 C 1.50702 * 120.00228 * 174.82374 * 16 7 6 19 19 H 1.08995 * 109.46959 * 51.73471 * 18 16 7 20 20 C 1.53001 * 109.46911 * 291.73343 * 18 16 7 21 21 C 1.52992 * 109.47525 * 299.99810 * 20 18 16 22 22 C 1.52997 * 109.47348 * 300.00554 * 21 20 18 23 23 C 1.53001 * 109.47260 * 59.99284 * 22 21 20 24 24 H 1.08999 * 109.47047 * 60.00761 * 23 22 21 25 25 C 1.50702 * 109.47137 * 180.02562 * 23 22 21 26 26 O 1.20826 * 120.00186 * 120.00073 * 25 23 22 27 27 O 1.34232 * 119.99875 * 300.00229 * 25 23 22 28 28 C 1.45202 * 116.99969 * 179.97438 * 27 25 23 29 29 C 1.52990 * 109.47261 * 300.00348 * 23 22 21 30 30 H 1.09002 * 109.46805 * 300.00038 * 1 2 3 31 31 H 1.08999 * 109.47321 * 60.00113 * 1 2 3 32 32 H 1.09002 * 109.46833 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47462 * 59.99605 * 5 3 2 34 34 H 1.09002 * 109.47393 * 299.99568 * 5 3 2 35 35 H 1.08999 * 109.46624 * 60.00183 * 6 5 3 36 36 H 1.08995 * 109.46888 * 299.99953 * 6 5 3 37 37 H 0.97000 * 120.00160 * 359.97438 * 11 10 8 38 38 H 1.08997 * 109.46736 * 60.00507 * 20 18 16 39 39 H 1.09005 * 109.46674 * 179.97438 * 20 18 16 40 40 H 1.09007 * 109.46786 * 59.99712 * 21 20 18 41 41 H 1.08998 * 109.47620 * 179.97438 * 21 20 18 42 42 H 1.08995 * 109.47372 * 179.97438 * 22 21 20 43 43 H 1.08998 * 109.46993 * 299.99671 * 22 21 20 44 44 H 1.08997 * 109.46942 * 60.00064 * 28 27 25 45 45 H 1.09000 * 109.47120 * 180.02562 * 28 27 25 46 46 H 1.09004 * 109.47244 * 299.99935 * 28 27 25 47 47 H 1.09004 * 109.47482 * 299.99455 * 29 23 22 48 48 H 1.09006 * 109.47369 * 179.97438 * 29 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 6 4.0001 2.7421 -0.0011 7 7 5.4631 2.8188 -0.0023 8 6 6.1467 2.8545 -1.1902 9 1 5.9746 2.0921 -1.9355 10 6 7.0611 3.8717 -1.4352 11 7 7.8539 3.8046 -2.4810 12 14 7.1632 5.3346 -0.2781 13 1 6.9806 6.5900 -1.0499 14 1 8.4921 5.3497 0.3846 15 1 6.0980 5.2268 0.7512 16 6 6.1370 2.8541 1.1644 17 8 5.5310 2.9173 2.2132 18 6 7.6435 2.8152 1.1658 19 1 8.0274 3.5827 0.4939 20 6 8.1185 1.4396 0.6933 21 6 7.5796 0.3622 1.6364 22 6 8.0950 0.6207 3.0536 23 6 7.6200 1.9962 3.5261 24 1 6.5304 2.0244 3.5251 25 6 8.1282 2.2510 4.9218 26 8 8.8474 3.1972 5.1395 27 8 7.7820 1.4268 5.9230 28 6 8.3088 1.7329 7.2410 29 6 8.1590 3.0736 2.5830 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 3.9557 0.7809 -0.8908 34 1 3.9564 0.7807 0.8892 35 1 3.6107 3.2364 0.8889 36 1 3.6101 3.2360 -0.8910 37 1 7.8011 3.0448 -3.0817 38 1 7.7513 1.2556 -0.3163 39 1 9.2082 1.4116 0.6940 40 1 6.4899 0.3905 1.6354 41 1 7.9176 -0.6178 1.2996 42 1 7.7107 -0.1466 3.7256 43 1 9.1846 0.5925 3.0547 44 1 7.9706 2.7230 7.5465 45 1 7.9535 0.9906 7.9557 46 1 9.3983 1.7146 7.2101 47 1 9.2487 3.0454 2.5841 48 1 7.8202 4.0535 2.9194 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871342154.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:13 Heat of formation + Delta-G solvation = -209.265274 kcal Electronic energy + Delta-G solvation = -32202.275712 eV Core-core repulsion = 27836.687273 eV Total energy + Delta-G solvation = -4365.588439 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 341.176 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.70192 -40.28946 -39.60100 -37.04453 -36.38232 -36.04665 -35.03463 -32.85627 -31.35383 -30.56548 -30.35883 -27.76030 -27.54589 -24.70660 -24.17948 -23.53834 -22.28361 -20.96641 -20.48788 -19.85493 -19.22619 -17.65193 -17.29754 -17.21589 -16.61028 -16.47560 -16.39803 -16.15969 -15.43599 -15.11413 -14.62014 -14.56850 -14.00979 -13.80695 -13.63027 -13.50993 -13.31979 -13.01344 -12.85220 -12.60339 -12.42311 -12.34772 -12.23504 -12.15851 -11.97393 -11.77422 -11.58730 -11.40973 -10.76485 -10.69702 -10.69137 -10.62663 -10.53888 -10.47392 -10.34672 -10.27758 -10.13003 -9.84999 -9.68088 -9.31783 -9.09604 -8.49908 -7.89717 -6.84675 -4.39884 2.40212 2.47922 2.81792 2.92688 3.18087 3.28741 3.41079 3.59271 4.08083 4.32798 4.85972 4.88791 5.03319 5.07274 5.07917 5.10900 5.14331 5.15169 5.18358 5.40052 5.43356 5.45777 5.53607 5.58017 5.59876 5.65010 5.83082 5.85429 5.92510 5.93617 6.04168 6.15610 6.28274 6.38273 6.40793 6.46611 6.52104 6.55285 6.62347 6.65218 6.68567 6.83120 6.98193 7.53581 7.87472 7.92079 7.99508 8.44389 8.60676 9.20096 9.61472 10.47442 Molecular weight = 341.18amu Principal moments of inertia in cm(-1) A = 0.008823 B = 0.004766 C = 0.003547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3172.760698 B = 5872.982101 C = 7891.592971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.364 6.364 3 C 0.467 3.533 4 O -0.509 6.509 5 C -0.122 4.122 6 C 0.120 3.880 7 N -0.466 5.466 8 C -0.419 4.419 9 H 0.084 0.916 10 C 0.035 3.965 11 N -0.870 5.870 12 Si 1.031 2.969 13 H -0.285 1.285 14 H -0.273 1.273 15 H -0.268 1.268 16 C 0.498 3.502 17 O -0.588 6.588 18 C -0.105 4.105 19 H 0.099 0.901 20 C -0.101 4.101 21 C -0.116 4.116 22 C -0.105 4.105 23 C -0.095 4.095 24 H 0.151 0.849 25 C 0.468 3.532 26 O -0.515 6.515 27 O -0.360 6.360 28 C 0.034 3.966 29 C -0.083 4.083 30 H 0.061 0.939 31 H 0.061 0.939 32 H 0.097 0.903 33 H 0.106 0.894 34 H 0.103 0.897 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.278 0.722 38 H 0.093 0.907 39 H 0.061 0.939 40 H 0.065 0.935 41 H 0.064 0.936 42 H 0.069 0.931 43 H 0.061 0.939 44 H 0.060 0.940 45 H 0.097 0.903 46 H 0.059 0.941 47 H 0.070 0.930 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.331 -9.363 8.493 13.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.281 6.281 3 C 0.310 3.690 4 O -0.396 6.396 5 C -0.161 4.161 6 C -0.004 4.004 7 N -0.186 5.186 8 C -0.547 4.547 9 H 0.101 0.899 10 C -0.176 4.176 11 N -0.502 5.502 12 Si 0.858 3.142 13 H -0.212 1.212 14 H -0.200 1.200 15 H -0.193 1.193 16 C 0.289 3.711 17 O -0.473 6.473 18 C -0.126 4.126 19 H 0.116 0.884 20 C -0.139 4.139 21 C -0.153 4.153 22 C -0.143 4.143 23 C -0.113 4.113 24 H 0.167 0.833 25 C 0.312 3.688 26 O -0.403 6.403 27 O -0.277 6.277 28 C -0.060 4.060 29 C -0.121 4.121 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.116 0.884 33 H 0.124 0.876 34 H 0.121 0.879 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.089 0.911 38 H 0.111 0.889 39 H 0.079 0.921 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.088 0.912 43 H 0.079 0.921 44 H 0.078 0.922 45 H 0.115 0.885 46 H 0.078 0.922 47 H 0.088 0.912 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -2.850 -7.336 9.307 12.189 hybrid contribution -0.857 -1.189 -0.320 1.500 sum -3.707 -8.526 8.987 12.930 Atomic orbital electron populations 1.23204 0.77001 1.03268 1.02416 1.86536 1.23009 1.34114 1.84433 1.24002 0.92325 0.81002 0.71685 1.90650 1.67342 1.36299 1.45333 1.21822 0.86076 1.02462 1.05746 1.21232 0.83911 0.91969 1.03253 1.43678 1.03153 1.66057 1.05726 1.20310 1.25374 1.13477 0.95526 0.89868 1.26477 0.92728 0.99398 0.98958 1.70783 1.33961 1.32630 1.12816 0.84179 0.77623 0.76275 0.76109 1.21250 1.19982 1.19297 1.20514 0.89633 0.77472 0.83495 1.90389 1.70387 1.54911 1.31591 1.21326 0.93664 1.00909 0.96661 0.88395 1.21370 0.99885 0.91797 1.00832 1.21541 1.01202 0.98750 0.93837 1.21493 1.00572 0.94563 0.97632 1.21643 1.06506 0.97491 0.85682 0.83251 1.24272 0.77098 0.79469 0.87957 1.90616 1.35267 1.29829 1.84559 1.86544 1.69089 1.53678 1.18378 1.23191 0.99410 1.02144 0.81252 1.21251 1.00083 0.97985 0.92773 0.92066 0.92061 0.88436 0.87570 0.87874 0.90632 0.90278 0.91128 0.88878 0.92068 0.91662 0.91778 0.91240 0.92066 0.92155 0.88488 0.92231 0.91170 0.91259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.37 10.56 101.05 1.07 1.43 16 2 O -0.36 -5.13 10.57 -39.25 -0.41 -5.54 16 3 C 0.47 7.62 7.96 36.00 0.29 7.90 16 4 O -0.51 -9.51 15.73 -18.75 -0.29 -9.81 16 5 C -0.12 -2.02 6.13 -27.88 -0.17 -2.19 16 6 C 0.12 2.40 4.71 -4.04 -0.02 2.38 16 7 N -0.47 -10.19 1.98 -114.81 -0.23 -10.41 16 8 C -0.42 -9.81 7.46 -14.93 -0.11 -9.92 16 9 H 0.08 2.02 8.06 -52.49 -0.42 1.59 16 10 C 0.03 0.86 4.56 -17.47 -0.08 0.78 16 11 N -0.87 -22.65 13.69 55.50 0.76 -21.89 16 12 Si 1.03 24.02 24.33 -169.99 -4.14 19.88 16 13 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 14 H -0.27 -6.11 6.81 56.52 0.38 -5.72 16 15 H -0.27 -6.37 6.08 56.52 0.34 -6.02 16 16 C 0.50 10.86 3.11 -10.98 -0.03 10.82 16 17 O -0.59 -13.40 12.95 5.54 0.07 -13.33 16 18 C -0.11 -2.14 1.49 -91.77 -0.14 -2.27 16 19 H 0.10 2.19 2.58 -51.93 -0.13 2.06 16 20 C -0.10 -1.79 5.31 -26.73 -0.14 -1.93 16 21 C -0.12 -1.76 5.70 -26.74 -0.15 -1.91 16 22 C -0.10 -1.52 5.14 -26.73 -0.14 -1.66 16 23 C -0.09 -1.63 2.34 -91.78 -0.21 -1.85 16 24 H 0.15 2.84 5.22 -51.93 -0.27 2.57 16 25 C 0.47 7.98 7.26 36.01 0.26 8.24 16 26 O -0.51 -9.84 15.73 -18.75 -0.29 -10.14 16 27 O -0.36 -5.30 10.47 -39.26 -0.41 -5.71 16 28 C 0.03 0.37 10.56 101.05 1.07 1.44 16 29 C -0.08 -1.58 3.72 -26.74 -0.10 -1.68 16 30 H 0.06 0.64 8.13 -51.93 -0.42 0.21 16 31 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 32 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.11 1.66 8.14 -51.93 -0.42 1.24 16 34 H 0.10 1.66 8.14 -51.93 -0.42 1.23 16 35 H 0.08 1.60 7.32 -51.93 -0.38 1.22 16 36 H 0.08 1.60 8.00 -51.93 -0.42 1.19 16 37 H 0.28 7.05 8.73 -40.82 -0.36 6.69 16 38 H 0.09 1.81 6.43 -51.93 -0.33 1.47 16 39 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.06 1.07 7.22 -51.93 -0.37 0.69 16 41 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.07 0.90 8.11 -51.93 -0.42 0.48 16 43 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 44 H 0.06 0.66 8.13 -51.93 -0.42 0.24 16 45 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 46 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 47 H 0.07 1.25 8.10 -51.93 -0.42 0.83 16 48 H 0.07 1.42 8.10 -51.93 -0.42 1.00 16 LS Contribution 378.83 15.07 5.71 5.71 Total: -1.00 -29.17 378.83 -5.33 -34.50 By element: Atomic # 1 Polarization: 14.62 SS G_CDS: -7.47 Total: 7.15 kcal Atomic # 6 Polarization: 8.21 SS G_CDS: 1.38 Total: 9.59 kcal Atomic # 7 Polarization: -32.83 SS G_CDS: 0.53 Total: -32.30 kcal Atomic # 8 Polarization: -43.18 SS G_CDS: -1.34 Total: -44.53 kcal Atomic # 14 Polarization: 24.02 SS G_CDS: -4.14 Total: 19.88 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -29.17 -5.33 -34.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871342154.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -174.766 kcal (2) G-P(sol) polarization free energy of solvation -29.173 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -203.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.499 kcal (6) G-S(sol) free energy of system = (1) + (5) -209.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds