Wall clock time and date at job start Sat Apr 11 2020 06:21:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.46494 * 120.00161 * 2 1 4 4 C 1.39006 * 119.99802 * 179.97438 * 2 1 3 5 5 C 1.39136 * 119.70239 * 5.00236 * 4 2 1 6 6 C 1.38302 * 119.09357 * 180.02562 * 5 4 2 7 7 C 1.38882 * 118.50407 * 359.97438 * 6 5 4 8 8 C 1.50705 * 120.33342 * 179.97438 * 7 6 5 9 9 N 1.46496 * 109.47333 * 89.99536 * 8 7 6 10 10 C 1.34776 * 120.00076 * 179.97438 * 9 8 7 11 11 O 1.21570 * 120.00026 * 0.02562 * 10 9 8 12 12 N 1.34784 * 119.99790 * 180.02562 * 10 9 8 13 13 C 1.39455 * 119.99648 * 185.06510 * 12 10 9 14 14 C 1.38646 * 119.64673 * 185.35965 * 13 12 10 15 15 C 1.40816 * 118.67333 * 179.72003 * 14 13 12 16 16 C 1.41550 * 120.99671 * 180.25349 * 15 14 13 17 17 H 1.07994 * 120.00155 * 153.82644 * 16 15 14 18 18 C 1.40034 * 119.99833 * 333.81979 * 16 15 14 19 19 N 1.30737 * 119.99823 * 350.11068 * 18 16 15 20 20 Si 1.86794 * 119.99788 * 170.10602 * 18 16 15 21 21 H 1.48507 * 109.47266 * 0.02562 * 20 18 16 22 22 H 1.48505 * 109.47020 * 120.00218 * 20 18 16 23 23 H 1.48496 * 109.47345 * 240.00214 * 20 18 16 24 24 C 1.41160 * 118.00747 * 0.27865 * 15 14 13 25 25 C 1.36589 * 119.12658 * 359.97438 * 24 15 14 26 26 N 1.32065 * 121.26146 * 0.02562 * 25 24 15 27 27 C 1.38015 * 119.33213 * 0.25118 * 7 6 5 28 28 N 1.31971 * 120.85733 * 359.45595 * 27 7 6 29 29 H 1.08998 * 109.46779 * 270.00508 * 1 2 3 30 30 H 1.09002 * 109.46777 * 30.00364 * 1 2 3 31 31 H 1.08999 * 109.47290 * 149.99901 * 1 2 3 32 32 H 1.09007 * 109.47346 * 240.00200 * 3 2 1 33 33 H 1.08997 * 109.47385 * 0.02562 * 3 2 1 34 34 H 1.08996 * 109.47377 * 120.00116 * 3 2 1 35 35 H 1.07996 * 120.45660 * 0.02562 * 5 4 2 36 36 H 1.08003 * 120.74903 * 179.97438 * 6 5 4 37 37 H 1.09003 * 109.46854 * 329.99962 * 8 7 6 38 38 H 1.08999 * 109.47281 * 209.99913 * 8 7 6 39 39 H 0.97007 * 119.99744 * 0.02562 * 9 8 7 40 40 H 0.97002 * 120.00099 * 5.05532 * 12 10 9 41 41 H 1.07996 * 120.65950 * 359.97438 * 14 13 12 42 42 H 0.97006 * 119.99686 * 179.97438 * 19 18 16 43 43 H 1.07998 * 120.43978 * 179.97438 * 24 15 14 44 44 H 1.08004 * 119.37253 * 180.02562 * 25 24 15 45 45 H 1.08005 * 119.57403 * 179.75057 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.1600 -1.2039 0.0005 5 6 1.4620 -2.4029 -0.1043 6 6 2.1661 -3.5933 -0.1020 7 6 3.5500 -3.5446 0.0050 8 6 4.3580 -4.8167 0.0123 9 7 4.7241 -5.1707 -1.3613 10 6 5.4535 -6.2785 -1.6001 11 8 5.8074 -6.9843 -0.6757 12 7 5.7908 -6.6038 -2.8639 13 6 6.4537 -7.8033 -3.1218 14 6 6.8960 -8.0799 -4.4064 15 6 7.5683 -9.2945 -4.6425 16 6 8.0455 -9.6245 -5.9337 17 1 8.8848 -10.2950 -6.0441 18 6 7.4291 -9.0815 -7.0678 19 7 6.3020 -8.4296 -6.9502 20 14 8.2174 -9.2886 -8.7485 21 1 9.4788 -10.0605 -8.6120 22 1 7.2858 -10.0183 -9.6457 23 1 8.5142 -7.9523 -9.3242 24 6 7.7516 -10.1734 -3.5532 25 6 7.2756 -9.8166 -2.3237 26 7 6.6494 -8.6688 -2.1379 27 6 4.1773 -2.3198 0.1104 28 7 3.4803 -1.1992 0.0998 29 1 -0.3633 0.0001 1.0277 30 1 -0.3633 0.8900 -0.5139 31 1 -0.3634 -0.8900 -0.5138 32 1 2.8242 1.3264 -0.8900 33 1 1.4893 2.0972 0.0005 34 1 2.8242 1.3264 0.8899 35 1 0.3852 -2.4041 -0.1864 36 1 1.6514 -4.5394 -0.1815 37 1 3.7657 -5.6208 0.4491 38 1 5.2622 -4.6694 0.6029 39 1 4.4420 -4.6072 -2.0989 40 1 5.5722 -6.0037 -3.5940 41 1 6.7320 -7.3761 -5.2088 42 1 5.8752 -8.0532 -7.7358 43 1 8.2614 -11.1156 -3.6901 44 1 7.4141 -10.4858 -1.4874 45 1 5.2529 -2.2776 0.1978 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871721055.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:19 Heat of formation + Delta-G solvation = 65.755938 kcal Electronic energy + Delta-G solvation = -27615.076521 eV Core-core repulsion = 23633.308319 eV Total energy + Delta-G solvation = -3981.768202 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.64934 -39.66261 -38.03886 -37.04315 -34.77991 -34.11580 -33.66921 -32.57912 -31.01798 -30.43074 -28.62157 -28.55760 -26.70966 -25.95323 -24.30872 -23.37638 -21.96508 -21.67618 -21.14129 -20.03248 -18.16576 -17.72672 -17.61051 -16.99619 -16.22379 -15.68822 -15.35205 -15.18464 -15.00123 -14.85221 -14.57838 -14.40856 -14.14928 -13.94268 -13.56292 -13.37450 -13.15838 -12.98651 -12.93952 -12.80733 -12.64078 -12.56831 -12.38634 -12.10259 -11.66176 -11.41739 -11.16644 -10.88453 -10.32757 -10.22729 -10.07868 -9.96067 -9.72192 -9.62194 -9.52209 -9.36466 -8.74021 -7.94012 -7.86614 -7.66808 -6.98359 -6.71159 -4.59743 1.01250 1.15880 2.56881 2.72888 2.82962 3.03318 3.08787 3.14310 3.27019 3.73401 3.87249 3.92975 4.22622 4.52735 4.64803 4.69171 4.73004 4.75350 4.83798 4.89253 4.95691 5.01473 5.19134 5.28585 5.39006 5.49962 5.67469 5.71757 5.74783 5.80454 6.00957 6.15336 6.32215 6.55968 6.58527 6.66011 6.75650 6.84140 6.98752 7.01577 7.17380 7.34635 7.47506 7.53582 7.89148 7.91241 8.15517 8.45091 8.50442 8.76486 8.79480 9.23791 9.76991 10.12262 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016098 B = 0.001961 C = 0.001808 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.935998 B =14271.458711 C =15486.871543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.620 5.620 3 C 0.106 3.894 4 C 0.402 3.598 5 C -0.242 4.242 6 C -0.013 4.013 7 C -0.215 4.215 8 C 0.197 3.803 9 N -0.752 5.752 10 C 0.692 3.308 11 O -0.535 6.535 12 N -0.668 5.668 13 C 0.355 3.645 14 C -0.243 4.243 15 C 0.142 3.858 16 C -0.454 4.454 17 H 0.081 0.919 18 C 0.075 3.925 19 N -0.795 5.795 20 Si 0.914 3.086 21 H -0.260 1.260 22 H -0.274 1.274 23 H -0.272 1.272 24 C -0.283 4.283 25 C 0.119 3.881 26 N -0.552 5.552 27 C 0.169 3.831 28 N -0.542 5.542 29 H 0.052 0.948 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.056 0.944 33 H 0.067 0.933 34 H 0.058 0.942 35 H 0.133 0.867 36 H 0.135 0.865 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.391 0.609 40 H 0.404 0.596 41 H 0.132 0.868 42 H 0.279 0.721 43 H 0.101 0.899 44 H 0.122 0.878 45 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.155 17.944 8.503 23.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.335 5.335 3 C -0.037 4.037 4 C 0.168 3.832 5 C -0.266 4.266 6 C -0.039 4.039 7 C -0.221 4.221 8 C 0.072 3.928 9 N -0.410 5.410 10 C 0.391 3.609 11 O -0.406 6.406 12 N -0.316 5.316 13 C 0.128 3.872 14 C -0.269 4.269 15 C 0.134 3.866 16 C -0.485 4.485 17 H 0.100 0.900 18 C -0.143 4.143 19 N -0.422 5.422 20 Si 0.738 3.262 21 H -0.184 1.184 22 H -0.199 1.199 23 H -0.197 1.197 24 C -0.307 4.307 25 C -0.035 4.035 26 N -0.271 5.271 27 C 0.011 3.989 28 N -0.259 5.259 29 H 0.070 0.930 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.074 0.926 33 H 0.086 0.914 34 H 0.076 0.924 35 H 0.150 0.850 36 H 0.153 0.847 37 H 0.089 0.911 38 H 0.090 0.910 39 H 0.224 0.776 40 H 0.238 0.762 41 H 0.150 0.850 42 H 0.090 0.910 43 H 0.120 0.880 44 H 0.140 0.860 45 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -12.027 18.611 10.208 24.397 hybrid contribution -0.259 -0.438 -2.520 2.571 sum -12.286 18.173 7.688 23.244 Atomic orbital electron populations 1.21745 0.78436 1.03110 1.01558 1.46212 1.05080 1.03184 1.78979 1.21497 0.96380 0.83642 1.02178 1.18379 0.88579 0.85771 0.90486 1.21429 1.01034 0.91711 1.12475 1.21310 0.93269 0.98039 0.91308 1.20628 0.94605 0.96243 1.10584 1.19697 0.97781 0.92269 0.83068 1.45321 1.59258 1.27708 1.08720 1.16086 0.79603 0.81274 0.83892 1.91003 1.56626 1.50970 1.42016 1.42569 1.60274 1.21321 1.07445 1.17977 0.93376 0.85375 0.90428 1.21624 1.10615 1.00601 0.94028 1.17589 0.87605 0.88888 0.92540 1.19612 1.14411 1.24762 0.89734 0.90042 1.25947 0.93811 0.92875 1.01688 1.69758 1.13437 1.27000 1.31994 0.86166 0.80242 0.78992 0.80762 1.18362 1.19934 1.19736 1.21684 1.12421 1.01414 0.95137 1.21472 0.94436 0.92317 0.95303 1.67182 1.22538 1.04387 1.32998 1.22405 0.99596 0.86135 0.90757 1.67238 1.06124 1.31647 1.20858 0.92971 0.91006 0.90977 0.92554 0.91378 0.92365 0.84976 0.84676 0.91070 0.90974 0.77589 0.76167 0.84998 0.90953 0.88048 0.86036 0.82553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.46 10.25 59.85 0.61 1.08 16 2 N -0.62 -5.06 3.39 -189.67 -0.64 -5.70 16 3 C 0.11 0.73 10.19 59.84 0.61 1.34 16 4 C 0.40 4.14 7.37 -155.02 -1.14 2.99 16 5 C -0.24 -2.19 9.27 -39.22 -0.36 -2.55 16 6 C -0.01 -0.12 9.85 -39.32 -0.39 -0.51 16 7 C -0.22 -2.22 5.27 -104.46 -0.55 -2.77 16 8 C 0.20 2.40 5.82 -5.19 -0.03 2.37 16 9 N -0.75 -10.47 5.55 -66.42 -0.37 -10.84 16 10 C 0.69 13.49 8.51 -86.91 -0.74 12.75 16 11 O -0.53 -12.76 14.64 5.30 0.08 -12.68 16 12 N -0.67 -13.42 5.40 -15.86 -0.09 -13.51 16 13 C 0.35 8.77 7.41 -154.68 -1.15 7.62 16 14 C -0.24 -6.23 8.62 -38.46 -0.33 -6.56 16 15 C 0.14 3.78 5.60 -106.55 -0.60 3.18 16 16 C -0.45 -11.74 9.14 -37.65 -0.34 -12.09 16 17 H 0.08 2.02 7.87 -52.49 -0.41 1.61 16 18 C 0.07 1.81 5.31 -17.34 -0.09 1.72 16 19 N -0.80 -19.66 10.70 55.55 0.59 -19.06 16 20 Si 0.91 18.09 29.57 -169.99 -5.03 13.06 16 21 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 22 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 23 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 24 C -0.28 -7.03 9.85 -39.07 -0.38 -7.41 16 25 C 0.12 2.90 11.10 -18.05 -0.20 2.70 16 26 N -0.55 -14.41 7.90 -12.76 -0.10 -14.51 16 27 C 0.17 1.79 10.85 -17.57 -0.19 1.59 16 28 N -0.54 -6.19 9.57 -12.44 -0.12 -6.30 16 29 H 0.05 0.23 8.14 -51.93 -0.42 -0.20 16 30 H 0.07 0.23 7.92 -51.93 -0.41 -0.18 16 31 H 0.07 0.31 5.98 -51.93 -0.31 0.00 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.30 7.79 -51.93 -0.40 -0.11 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.13 0.90 6.03 -52.49 -0.32 0.58 16 36 H 0.14 1.10 8.06 -52.48 -0.42 0.67 16 37 H 0.07 0.92 8.09 -51.93 -0.42 0.50 16 38 H 0.07 0.91 8.09 -51.93 -0.42 0.49 16 39 H 0.39 4.52 8.48 -40.82 -0.35 4.18 16 40 H 0.40 6.70 8.72 -40.82 -0.36 6.35 16 41 H 0.13 3.36 6.11 -52.49 -0.32 3.04 16 42 H 0.28 6.24 8.29 -40.82 -0.34 5.90 16 43 H 0.10 2.31 8.06 -52.49 -0.42 1.88 16 44 H 0.12 2.61 8.06 -52.48 -0.42 2.18 16 45 H 0.16 1.43 8.06 -52.48 -0.42 1.01 16 LS Contribution 382.46 15.07 5.76 5.76 Total: -1.00 -33.96 382.46 -11.00 -44.95 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: -5.81 Total: 13.39 kcal Atomic # 6 Polarization: 10.72 SS G_CDS: -5.28 Total: 5.45 kcal Atomic # 7 Polarization: -69.21 SS G_CDS: -0.72 Total: -69.93 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: 0.08 Total: -12.68 kcal Atomic # 14 Polarization: 18.09 SS G_CDS: -5.03 Total: 13.06 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.96 -11.00 -44.95 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871721055.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.711 kcal (2) G-P(sol) polarization free energy of solvation -33.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.955 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds