Wall clock time and date at job start Sat Apr 11 2020 06:21:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36889 * 126.39734 * 2 1 4 4 C 1.34667 * 106.81755 * 180.02562 * 3 2 1 5 5 N 1.34129 * 108.01944 * 359.78016 * 4 3 2 6 6 C 1.30499 * 109.25624 * 0.37352 * 5 4 3 7 7 C 1.50704 * 125.64575 * 179.89233 * 6 5 4 8 8 H 1.08996 * 110.88459 * 183.57179 * 7 6 5 9 9 C 1.55158 * 111.00273 * 59.69131 * 7 6 5 10 10 C 1.54330 * 102.94037 * 206.38387 * 9 7 6 11 11 N 1.47026 * 107.27139 * 22.19011 * 10 9 7 12 12 C 1.34770 * 125.64868 * 181.02142 * 11 10 9 13 13 O 1.21584 * 120.00082 * 180.02562 * 12 11 10 14 14 N 1.34773 * 120.00065 * 0.02653 * 12 11 10 15 15 C 1.39467 * 120.00212 * 185.06725 * 14 12 11 16 16 C 1.38637 * 119.64822 * 185.35870 * 15 14 12 17 17 C 1.40826 * 118.67630 * 180.02562 * 16 15 14 18 18 C 1.41541 * 121.00144 * 179.72316 * 17 16 15 19 19 H 1.07992 * 120.00165 * 153.86238 * 18 17 16 20 20 C 1.40037 * 119.99667 * 333.86310 * 18 17 16 21 21 N 1.30737 * 119.99964 * 350.14020 * 20 18 17 22 22 Si 1.86803 * 119.99601 * 170.13637 * 20 18 17 23 23 H 1.48500 * 109.46884 * 90.00117 * 22 20 18 24 24 H 1.48492 * 109.46921 * 210.00022 * 22 20 18 25 25 H 1.48501 * 109.47170 * 330.00102 * 22 20 18 26 26 C 1.41163 * 118.00168 * 359.97438 * 17 16 15 27 27 C 1.36592 * 119.12685 * 359.97438 * 26 17 16 28 28 N 1.32069 * 121.26234 * 0.02562 * 27 26 17 29 29 C 1.47429 * 108.70056 * 1.28962 * 11 10 9 30 30 H 1.08999 * 109.47271 * 269.96840 * 1 2 3 31 31 H 1.08999 * 109.47460 * 29.97004 * 1 2 3 32 32 H 1.09004 * 109.46908 * 149.96951 * 1 2 3 33 33 H 1.07993 * 126.58730 * 359.97438 * 3 2 1 34 34 H 1.07999 * 125.98848 * 180.02562 * 4 3 2 35 35 H 1.09001 * 110.71985 * 88.02166 * 9 7 6 36 36 H 1.08999 * 110.87337 * 324.81489 * 9 7 6 37 37 H 1.09001 * 109.88108 * 262.77674 * 10 9 7 38 38 H 1.08993 * 110.01090 * 141.68653 * 10 9 7 39 39 H 0.97006 * 120.00164 * 5.07518 * 14 12 11 40 40 H 1.08007 * 120.66634 * 359.97438 * 16 15 14 41 41 H 0.97007 * 119.99379 * 180.02562 * 21 20 18 42 42 H 1.07995 * 120.43681 * 179.97438 * 26 17 16 43 43 H 1.08007 * 119.36892 * 179.97438 * 27 26 17 44 44 H 1.09006 * 110.36636 * 94.47786 * 29 11 10 45 45 H 1.08997 * 110.36397 * 216.80012 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2772 1.1019 0.0000 4 6 3.5460 0.6506 -0.0006 5 7 3.5095 -0.6902 0.0040 6 6 2.2663 -1.0869 -0.0007 7 6 1.8019 -2.5206 -0.0002 8 1 0.7155 -2.5772 -0.0682 9 6 2.3205 -3.2728 1.2539 10 6 2.3687 -4.7410 0.7809 11 7 2.4450 -4.7244 -0.6873 12 6 2.4844 -5.8106 -1.4841 13 8 2.5478 -5.6773 -2.6909 14 7 2.4536 -7.0446 -0.9431 15 6 2.6007 -8.1671 -1.7578 16 6 2.4568 -9.4336 -1.2128 17 6 2.6101 -10.5527 -2.0539 18 6 2.4794 -11.8682 -1.5481 19 1 2.1795 -12.6717 -2.2044 20 6 2.7391 -12.1277 -0.1967 21 7 3.2845 -11.2059 0.5529 22 14 2.3059 -13.7911 0.5348 23 1 3.4629 -14.7109 0.3923 24 1 1.9771 -13.6284 1.9737 25 1 1.1333 -14.3561 -0.1802 26 6 2.9034 -10.3231 -3.4155 27 6 3.0257 -9.0379 -3.8617 28 7 2.8754 -8.0114 -3.0445 29 6 2.4778 -3.3227 -1.1431 30 1 -0.3634 -0.0006 1.0276 31 1 -0.3634 0.8902 -0.5133 32 1 -0.3633 -0.8897 -0.5143 33 1 1.9612 2.1345 -0.0004 34 1 4.4368 1.2612 -0.0003 35 1 1.6265 -3.1584 2.0866 36 1 3.3152 -2.9244 1.5320 37 1 1.4663 -5.2628 1.0993 38 1 3.2480 -5.2367 1.1923 39 1 2.3289 -7.1522 0.0129 40 1 2.2324 -9.5598 -0.1638 41 1 3.4646 -11.3859 1.4889 42 1 3.0295 -11.1526 -4.0954 43 1 3.2505 -8.8578 -4.9027 44 1 3.5074 -2.9934 -1.2833 45 1 1.9136 -3.2117 -2.0690 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871725673.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:22 Heat of formation + Delta-G solvation = 87.143143 kcal Electronic energy + Delta-G solvation = -28560.078703 eV Core-core repulsion = 24579.237919 eV Total energy + Delta-G solvation = -3980.840783 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.39599 -40.02009 -38.45591 -37.05245 -34.32347 -34.26614 -33.72158 -32.33167 -30.46195 -29.79518 -28.80703 -27.90746 -27.22543 -25.96425 -23.99840 -22.32424 -21.86720 -21.53431 -21.18654 -19.58086 -19.38626 -17.96070 -17.56622 -17.52956 -16.11141 -15.98310 -15.68216 -15.28533 -14.94273 -14.65825 -14.20305 -14.15128 -13.97919 -13.84045 -13.46581 -13.45306 -13.27690 -13.10946 -12.87981 -12.75501 -12.58745 -12.54239 -12.07551 -11.75555 -11.50453 -11.42147 -11.15388 -11.02248 -10.87769 -10.26305 -10.16471 -10.10239 -9.87648 -9.72122 -9.53686 -9.35679 -8.62771 -8.38053 -7.92922 -7.68775 -6.98672 -6.71058 -4.59689 1.72659 2.41625 2.72770 2.83489 2.86940 2.94758 3.02614 3.07273 3.27137 3.85930 3.88172 4.04538 4.23837 4.29941 4.41972 4.56008 4.60121 4.68141 4.74451 4.76969 4.96450 5.09280 5.13589 5.22509 5.43844 5.54530 5.61314 5.72806 5.75904 5.91797 5.95178 5.96788 6.06241 6.36082 6.51256 6.64076 6.68468 6.84915 6.85652 6.99167 7.17109 7.35359 7.47875 7.53244 7.87378 7.89936 8.12782 8.39785 8.50031 8.76120 8.79147 9.20592 9.76955 10.12483 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021424 B = 0.002184 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.628920 B =12819.354027 C =13586.321842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.459 5.459 3 C -0.061 4.061 4 C -0.026 4.026 5 N -0.481 5.481 6 C 0.220 3.780 7 C -0.021 4.021 8 H 0.096 0.904 9 C -0.112 4.112 10 C 0.098 3.902 11 N -0.643 5.643 12 C 0.712 3.288 13 O -0.530 6.530 14 N -0.665 5.665 15 C 0.354 3.646 16 C -0.242 4.242 17 C 0.143 3.857 18 C -0.454 4.454 19 H 0.081 0.919 20 C 0.075 3.925 21 N -0.795 5.795 22 Si 0.914 3.086 23 H -0.269 1.269 24 H -0.276 1.276 25 H -0.261 1.261 26 C -0.282 4.282 27 C 0.119 3.881 28 N -0.553 5.553 29 C 0.146 3.854 30 H 0.078 0.922 31 H 0.087 0.913 32 H 0.089 0.911 33 H 0.174 0.826 34 H 0.170 0.830 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.404 0.596 40 H 0.132 0.868 41 H 0.280 0.720 42 H 0.102 0.898 43 H 0.122 0.878 44 H 0.079 0.921 45 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.415 20.341 7.275 22.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.142 5.142 3 C -0.194 4.194 4 C -0.174 4.174 5 N -0.199 5.199 6 C -0.043 4.043 7 C -0.042 4.042 8 H 0.115 0.885 9 C -0.151 4.151 10 C -0.025 4.025 11 N -0.385 5.385 12 C 0.414 3.586 13 O -0.401 6.401 14 N -0.312 5.312 15 C 0.129 3.871 16 C -0.268 4.268 17 C 0.134 3.866 18 C -0.485 4.485 19 H 0.099 0.901 20 C -0.143 4.143 21 N -0.421 5.421 22 Si 0.738 3.262 23 H -0.194 1.194 24 H -0.201 1.201 25 H -0.185 1.185 26 C -0.306 4.306 27 C -0.035 4.035 28 N -0.272 5.272 29 C 0.022 3.978 30 H 0.096 0.904 31 H 0.105 0.895 32 H 0.108 0.892 33 H 0.191 0.809 34 H 0.187 0.813 35 H 0.100 0.900 36 H 0.108 0.892 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.239 0.761 40 H 0.150 0.850 41 H 0.091 0.909 42 H 0.120 0.880 43 H 0.140 0.860 44 H 0.097 0.903 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.659 20.818 6.210 22.450 hybrid contribution -0.967 -0.892 1.390 1.914 sum -6.625 19.926 7.600 22.331 Atomic orbital electron populations 1.22087 0.76687 1.04926 1.03722 1.45297 1.07587 1.06619 1.54655 1.22694 0.91416 0.92432 1.12855 1.22327 0.96439 0.91141 1.07485 1.70224 1.18239 1.11948 1.19458 1.22762 0.85841 0.89931 1.05728 1.20725 1.00088 0.85545 0.97813 0.88548 1.22635 1.03208 0.93194 0.96091 1.21997 1.01892 0.97250 0.81403 1.47625 1.79890 1.05064 1.05907 1.15557 0.78737 0.79490 0.84825 1.91014 1.53864 1.83907 1.11304 1.42555 1.74906 1.03287 1.10478 1.17975 0.96530 0.83962 0.88680 1.21612 1.13776 0.89228 1.02204 1.17580 0.85660 0.93088 0.90244 1.19564 1.40784 0.94162 0.94016 0.90093 1.25947 0.92298 0.99014 0.97033 1.69753 1.30223 1.34361 1.07808 0.86218 0.79962 0.81606 0.78387 1.19420 1.20103 1.18467 1.21683 1.14585 0.96712 0.97636 1.21475 0.96421 0.88311 0.97262 1.67180 1.23033 1.34409 1.02575 1.21915 1.01376 0.78852 0.95695 0.90363 0.89470 0.89241 0.80906 0.81267 0.90010 0.89166 0.91536 0.91084 0.76124 0.85001 0.90871 0.88022 0.86022 0.90291 0.90450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.30 10.87 59.85 0.65 0.95 16 2 N -0.46 -3.82 3.15 -121.28 -0.38 -4.20 16 3 C -0.06 -0.49 11.58 -16.56 -0.19 -0.68 16 4 C -0.03 -0.26 11.87 -17.81 -0.21 -0.47 16 5 N -0.48 -6.08 10.90 -10.82 -0.12 -6.20 16 6 C 0.22 2.36 6.59 -155.42 -1.02 1.33 16 7 C -0.02 -0.21 3.40 -89.50 -0.30 -0.51 16 8 H 0.10 0.77 6.81 -51.93 -0.35 0.42 16 9 C -0.11 -1.03 6.40 -24.89 -0.16 -1.19 16 10 C 0.10 1.10 6.16 -3.06 -0.02 1.08 16 11 N -0.64 -9.95 3.32 -176.10 -0.59 -10.54 16 12 C 0.71 14.75 8.44 -86.93 -0.73 14.01 16 13 O -0.53 -13.26 14.89 5.29 0.08 -13.19 16 14 N -0.66 -13.84 5.34 -15.87 -0.08 -13.93 16 15 C 0.35 8.90 7.41 -154.67 -1.15 7.76 16 16 C -0.24 -6.25 8.61 -38.46 -0.33 -6.58 16 17 C 0.14 3.80 5.61 -106.55 -0.60 3.21 16 18 C -0.45 -11.74 9.14 -37.65 -0.34 -12.08 16 19 H 0.08 2.00 7.87 -52.49 -0.41 1.59 16 20 C 0.07 1.82 5.31 -17.34 -0.09 1.72 16 21 N -0.80 -19.65 10.70 55.55 0.59 -19.05 16 22 Si 0.91 18.03 29.57 -169.99 -5.03 13.00 16 23 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 24 H -0.28 -5.29 7.11 56.52 0.40 -4.89 16 25 H -0.26 -5.11 7.11 56.52 0.40 -4.71 16 26 C -0.28 -7.05 9.85 -39.07 -0.38 -7.44 16 27 C 0.12 2.95 11.10 -18.04 -0.20 2.75 16 28 N -0.55 -14.68 7.89 -12.75 -0.10 -14.78 16 29 C 0.15 2.01 6.37 -2.41 -0.02 1.99 16 30 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.09 0.35 7.04 -51.93 -0.37 -0.01 16 33 H 0.17 0.80 8.06 -52.49 -0.42 0.37 16 34 H 0.17 1.32 8.06 -52.49 -0.42 0.90 16 35 H 0.08 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.09 0.93 7.98 -51.93 -0.41 0.52 16 37 H 0.07 0.65 8.12 -51.93 -0.42 0.23 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.40 7.04 7.68 -40.82 -0.31 6.73 16 40 H 0.13 3.36 6.12 -52.48 -0.32 3.04 16 41 H 0.28 6.27 8.29 -40.82 -0.34 5.93 16 42 H 0.10 2.32 8.06 -52.49 -0.42 1.90 16 43 H 0.12 2.64 8.06 -52.48 -0.42 2.22 16 44 H 0.08 1.21 7.81 -51.93 -0.41 0.80 16 45 H 0.08 1.13 8.03 -51.93 -0.42 0.71 16 LS Contribution 376.35 15.07 5.67 5.67 Total: -1.00 -35.36 376.35 -11.00 -46.35 By element: Atomic # 1 Polarization: 16.96 SS G_CDS: -5.94 Total: 11.02 kcal Atomic # 6 Polarization: 10.94 SS G_CDS: -5.10 Total: 5.84 kcal Atomic # 7 Polarization: -68.02 SS G_CDS: -0.68 Total: -68.70 kcal Atomic # 8 Polarization: -13.26 SS G_CDS: 0.08 Total: -13.19 kcal Atomic # 14 Polarization: 18.03 SS G_CDS: -5.03 Total: 13.00 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -35.36 -11.00 -46.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871725673.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.498 kcal (2) G-P(sol) polarization free energy of solvation -35.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.355 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds