Wall clock time and date at job start Sat Apr 11 2020 06:21:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36889 * 126.39734 * 2 1 4 4 C 1.34667 * 106.81755 * 180.02562 * 3 2 1 5 5 N 1.34129 * 108.01944 * 359.78016 * 4 3 2 6 6 C 1.30499 * 109.25624 * 0.37352 * 5 4 3 7 7 C 1.50704 * 125.64575 * 179.89233 * 6 5 4 8 8 H 1.08996 * 110.88459 * 183.57179 * 7 6 5 9 9 C 1.55158 * 111.00273 * 59.69131 * 7 6 5 10 10 C 1.54330 * 102.94037 * 206.38387 * 9 7 6 11 11 N 1.47026 * 107.27139 * 22.19011 * 10 9 7 12 12 C 1.34770 * 125.64868 * 181.02142 * 11 10 9 13 13 O 1.21584 * 120.00082 * 180.02562 * 12 11 10 14 14 N 1.34773 * 120.00065 * 0.02653 * 12 11 10 15 15 C 1.39467 * 120.00212 * 185.06725 * 14 12 11 16 16 C 1.38637 * 119.64822 * 185.35870 * 15 14 12 17 17 C 1.40826 * 118.67630 * 180.02562 * 16 15 14 18 18 C 1.41541 * 121.00144 * 179.72316 * 17 16 15 19 19 H 1.07992 * 120.00165 * 153.86238 * 18 17 16 20 20 C 1.40037 * 119.99667 * 333.86310 * 18 17 16 21 21 N 1.30737 * 119.99964 * 350.14020 * 20 18 17 22 22 Si 1.86803 * 119.99601 * 170.13637 * 20 18 17 23 23 H 1.48500 * 109.46884 * 90.00117 * 22 20 18 24 24 H 1.48492 * 109.46921 * 210.00022 * 22 20 18 25 25 H 1.48501 * 109.47170 * 330.00102 * 22 20 18 26 26 C 1.41163 * 118.00168 * 359.97438 * 17 16 15 27 27 C 1.36592 * 119.12685 * 359.97438 * 26 17 16 28 28 N 1.32069 * 121.26234 * 0.02562 * 27 26 17 29 29 C 1.47429 * 108.70056 * 1.28962 * 11 10 9 30 30 H 1.08999 * 109.47271 * 269.96840 * 1 2 3 31 31 H 1.08999 * 109.47460 * 29.97004 * 1 2 3 32 32 H 1.09004 * 109.46908 * 149.96951 * 1 2 3 33 33 H 1.07993 * 126.58730 * 359.97438 * 3 2 1 34 34 H 1.07999 * 125.98848 * 180.02562 * 4 3 2 35 35 H 1.09001 * 110.71985 * 88.02166 * 9 7 6 36 36 H 1.08999 * 110.87337 * 324.81489 * 9 7 6 37 37 H 1.09001 * 109.88108 * 262.77674 * 10 9 7 38 38 H 1.08993 * 110.01090 * 141.68653 * 10 9 7 39 39 H 0.97006 * 120.00164 * 5.07518 * 14 12 11 40 40 H 1.08007 * 120.66634 * 359.97438 * 16 15 14 41 41 H 0.97007 * 119.99379 * 180.02562 * 21 20 18 42 42 H 1.07995 * 120.43681 * 179.97438 * 26 17 16 43 43 H 1.08007 * 119.36892 * 179.97438 * 27 26 17 44 44 H 1.09006 * 110.36636 * 94.47786 * 29 11 10 45 45 H 1.08997 * 110.36397 * 216.80012 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2772 1.1019 0.0000 4 6 3.5460 0.6506 -0.0006 5 7 3.5095 -0.6902 0.0040 6 6 2.2663 -1.0869 -0.0007 7 6 1.8019 -2.5206 -0.0002 8 1 0.7155 -2.5772 -0.0682 9 6 2.3205 -3.2728 1.2539 10 6 2.3687 -4.7410 0.7809 11 7 2.4450 -4.7244 -0.6873 12 6 2.4844 -5.8106 -1.4841 13 8 2.5478 -5.6773 -2.6909 14 7 2.4536 -7.0446 -0.9431 15 6 2.6007 -8.1671 -1.7578 16 6 2.4568 -9.4336 -1.2128 17 6 2.6101 -10.5527 -2.0539 18 6 2.4794 -11.8682 -1.5481 19 1 2.1795 -12.6717 -2.2044 20 6 2.7391 -12.1277 -0.1967 21 7 3.2845 -11.2059 0.5529 22 14 2.3059 -13.7911 0.5348 23 1 3.4629 -14.7109 0.3923 24 1 1.9771 -13.6284 1.9737 25 1 1.1333 -14.3561 -0.1802 26 6 2.9034 -10.3231 -3.4155 27 6 3.0257 -9.0379 -3.8617 28 7 2.8754 -8.0114 -3.0445 29 6 2.4778 -3.3227 -1.1431 30 1 -0.3634 -0.0006 1.0276 31 1 -0.3634 0.8902 -0.5133 32 1 -0.3633 -0.8897 -0.5143 33 1 1.9612 2.1345 -0.0004 34 1 4.4368 1.2612 -0.0003 35 1 1.6265 -3.1584 2.0866 36 1 3.3152 -2.9244 1.5320 37 1 1.4663 -5.2628 1.0993 38 1 3.2480 -5.2367 1.1923 39 1 2.3289 -7.1522 0.0129 40 1 2.2324 -9.5598 -0.1638 41 1 3.4646 -11.3859 1.4889 42 1 3.0295 -11.1526 -4.0954 43 1 3.2505 -8.8578 -4.9027 44 1 3.5074 -2.9934 -1.2833 45 1 1.9136 -3.2117 -2.0690 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871725673.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:21 Heat of formation + Delta-G solvation = 65.712732 kcal Electronic energy + Delta-G solvation = -28561.007995 eV Core-core repulsion = 24579.237919 eV Total energy + Delta-G solvation = -3981.770075 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.07675 -41.55746 -40.10424 -38.48342 -36.11034 -35.53197 -34.91200 -33.47023 -32.38767 -30.74212 -30.40733 -28.92489 -27.90847 -27.74372 -25.24779 -23.80520 -23.15381 -22.97183 -22.12458 -20.98531 -20.36296 -19.48796 -19.22508 -18.28641 -17.62487 -17.10598 -16.91885 -16.56184 -16.22216 -16.06900 -16.01757 -15.60338 -15.17860 -14.85250 -14.57557 -14.45740 -14.42272 -14.27995 -14.08516 -13.90950 -13.78551 -13.60147 -13.29072 -13.14849 -12.84388 -12.68096 -12.59170 -12.42088 -12.06740 -11.89055 -11.82744 -11.53242 -11.29869 -11.17504 -10.90119 -10.52336 -9.91915 -9.72015 -9.62603 -9.29800 -8.84545 -8.56196 -6.56311 0.83307 1.02010 1.05804 1.42662 1.43402 1.55067 1.59487 1.93626 2.14427 2.21566 2.24095 2.84376 2.90412 3.26357 3.55479 3.67570 3.77182 3.82881 3.99023 4.12842 4.14786 4.23284 4.28859 4.44387 4.53738 4.62517 4.68483 4.71717 4.72243 4.80008 4.84528 4.89155 4.92117 4.95243 5.10679 5.14486 5.24743 5.29500 5.37330 5.50623 5.65461 5.86248 5.86931 5.98490 6.23895 6.25326 6.56302 6.79499 6.83217 6.88097 7.17564 7.53899 7.89136 8.31121 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.021424 B = 0.002184 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1306.628920 B =12819.354027 C =13586.321842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.059 3.941 2 N -0.456 5.456 3 C -0.044 4.044 4 C -0.060 4.060 5 N -0.523 5.523 6 C 0.200 3.800 7 C -0.005 4.005 8 H 0.123 0.877 9 C -0.100 4.100 10 C 0.091 3.909 11 N -0.635 5.635 12 C 0.708 3.292 13 O -0.581 6.581 14 N -0.656 5.656 15 C 0.351 3.649 16 C -0.257 4.257 17 C 0.113 3.887 18 C -0.481 4.481 19 H 0.084 0.916 20 C 0.036 3.964 21 N -0.817 5.817 22 Si 0.991 3.009 23 H -0.264 1.264 24 H -0.263 1.263 25 H -0.259 1.259 26 C -0.294 4.294 27 C 0.112 3.888 28 N -0.582 5.582 29 C 0.144 3.856 30 H 0.096 0.904 31 H 0.107 0.893 32 H 0.093 0.907 33 H 0.210 0.790 34 H 0.180 0.820 35 H 0.117 0.883 36 H 0.076 0.924 37 H 0.090 0.910 38 H 0.071 0.929 39 H 0.418 0.582 40 H 0.130 0.870 41 H 0.292 0.708 42 H 0.117 0.883 43 H 0.147 0.853 44 H 0.057 0.943 45 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.134 20.971 9.451 24.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 N -0.138 5.138 3 C -0.177 4.177 4 C -0.208 4.208 5 N -0.243 5.243 6 C -0.063 4.063 7 C -0.025 4.025 8 H 0.141 0.859 9 C -0.138 4.138 10 C -0.031 4.031 11 N -0.375 5.375 12 C 0.410 3.590 13 O -0.456 6.456 14 N -0.305 5.305 15 C 0.124 3.876 16 C -0.283 4.283 17 C 0.105 3.895 18 C -0.512 4.512 19 H 0.102 0.898 20 C -0.180 4.180 21 N -0.443 5.443 22 Si 0.811 3.189 23 H -0.189 1.189 24 H -0.187 1.187 25 H -0.182 1.182 26 C -0.318 4.318 27 C -0.041 4.041 28 N -0.302 5.302 29 C 0.020 3.980 30 H 0.114 0.886 31 H 0.125 0.875 32 H 0.112 0.888 33 H 0.227 0.773 34 H 0.197 0.803 35 H 0.135 0.865 36 H 0.095 0.905 37 H 0.108 0.892 38 H 0.089 0.911 39 H 0.256 0.744 40 H 0.148 0.852 41 H 0.102 0.898 42 H 0.135 0.865 43 H 0.164 0.836 44 H 0.075 0.925 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -7.396 21.500 8.447 24.255 hybrid contribution -0.395 -0.970 0.732 1.278 sum -7.791 20.530 9.178 23.799 Atomic orbital electron populations 1.22420 0.74199 1.06218 1.05309 1.45535 1.09085 1.05883 1.53294 1.23246 0.90632 0.93774 1.10070 1.22705 0.98189 0.90676 1.09241 1.70135 1.19945 1.13574 1.20597 1.22686 0.85938 0.90586 1.07066 1.20622 1.01029 0.84924 0.95972 0.85928 1.22597 1.03501 0.91041 0.96685 1.22330 1.03065 0.99331 0.78419 1.47561 1.77944 1.04345 1.07648 1.15702 0.78457 0.80183 0.84672 1.90966 1.56130 1.84780 1.13709 1.42404 1.74619 1.02657 1.10837 1.18185 0.95673 0.85049 0.88731 1.21586 1.15105 0.89519 1.02073 1.18028 0.86238 0.93992 0.91254 1.19862 1.41829 0.94052 0.95442 0.89765 1.26840 0.91438 1.03063 0.96707 1.69788 1.29594 1.36309 1.08577 0.85072 0.79624 0.76352 0.77865 1.18921 1.18748 1.18227 1.21868 1.14960 0.97376 0.97583 1.21912 0.95705 0.88127 0.98342 1.67293 1.24286 1.35191 1.03416 1.21953 1.00517 0.78404 0.97139 0.88558 0.87452 0.88837 0.77313 0.80298 0.86470 0.90481 0.89203 0.91064 0.74412 0.85191 0.89754 0.86471 0.83561 0.92467 0.91827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.32 10.87 127.77 1.39 1.70 16 2 N -0.46 -6.50 3.15 -537.62 -1.69 -8.20 16 3 C -0.04 -0.60 11.58 83.08 0.96 0.36 16 4 C -0.06 -1.19 11.87 83.52 0.99 -0.20 16 5 N -0.52 -13.28 10.90 -188.13 -2.05 -15.33 16 6 C 0.20 4.06 6.59 138.13 0.91 4.97 16 7 C 0.00 -0.09 3.40 -10.07 -0.03 -0.12 16 8 H 0.12 1.62 6.81 -2.39 -0.02 1.60 16 9 C -0.10 -1.63 6.40 31.79 0.20 -1.43 16 10 C 0.09 1.91 6.16 86.73 0.53 2.44 16 11 N -0.64 -19.78 3.32 -829.31 -2.76 -22.53 16 12 C 0.71 30.07 8.44 179.06 1.51 31.58 16 13 O -0.58 -30.23 14.89 -3.98 -0.06 -30.29 16 14 N -0.66 -27.85 5.34 -322.37 -1.72 -29.58 16 15 C 0.35 18.08 7.41 132.76 0.98 19.07 16 16 C -0.26 -13.57 8.61 23.00 0.20 -13.37 16 17 C 0.11 6.17 5.61 -21.11 -0.12 6.05 16 18 C -0.48 -25.07 9.14 23.52 0.21 -24.86 16 19 H 0.08 4.19 7.87 -2.91 -0.02 4.16 16 20 C 0.04 1.71 5.31 85.29 0.45 2.16 16 21 N -0.82 -40.09 10.70 21.84 0.23 -39.86 16 22 Si 0.99 35.96 29.57 68.60 2.03 37.99 16 23 H -0.26 -9.38 7.11 99.48 0.71 -8.67 16 24 H -0.26 -8.95 7.11 99.48 0.71 -8.25 16 25 H -0.26 -9.24 7.11 99.48 0.71 -8.53 16 26 C -0.29 -14.99 9.85 22.60 0.22 -14.77 16 27 C 0.11 5.68 11.10 84.27 0.94 6.61 16 28 N -0.58 -31.78 7.89 -194.26 -1.53 -33.31 16 29 C 0.14 4.04 6.37 86.93 0.55 4.60 16 30 H 0.10 0.21 8.14 -2.39 -0.02 0.19 16 31 H 0.11 0.16 8.14 -2.39 -0.02 0.14 16 32 H 0.09 0.44 7.04 -2.39 -0.02 0.43 16 33 H 0.21 1.15 8.06 -2.91 -0.02 1.13 16 34 H 0.18 2.80 8.06 -2.91 -0.02 2.77 16 35 H 0.12 1.16 8.14 -2.39 -0.02 1.14 16 36 H 0.08 1.51 7.98 -2.39 -0.02 1.49 16 37 H 0.09 1.53 8.12 -2.39 -0.02 1.51 16 38 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 39 H 0.42 14.62 7.68 -92.70 -0.71 13.91 16 40 H 0.13 6.77 6.12 -2.91 -0.02 6.75 16 41 H 0.29 12.74 8.29 -92.70 -0.77 11.97 16 42 H 0.12 5.42 8.06 -2.91 -0.02 5.39 16 43 H 0.15 6.42 8.06 -2.91 -0.02 6.40 16 44 H 0.06 1.86 7.81 -2.38 -0.02 1.84 16 45 H 0.06 1.94 8.03 -2.39 -0.02 1.92 16 Total: -1.00 -80.16 376.35 2.67 -77.49 By element: Atomic # 1 Polarization: 38.50 SS G_CDS: 0.32 Total: 38.82 kcal Atomic # 6 Polarization: 14.89 SS G_CDS: 9.91 Total: 24.80 kcal Atomic # 7 Polarization: -139.28 SS G_CDS: -9.53 Total: -148.81 kcal Atomic # 8 Polarization: -30.23 SS G_CDS: -0.06 Total: -30.29 kcal Atomic # 14 Polarization: 35.96 SS G_CDS: 2.03 Total: 37.99 kcal Total: -80.16 2.67 -77.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871725673.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.204 kcal (2) G-P(sol) polarization free energy of solvation -80.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds