Wall clock time and date at job start Sat Apr 11 2020 06:21:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46501 * 119.99541 * 2 1 4 4 C 1.39000 * 120.00231 * 180.02562 * 2 1 3 5 5 C 1.39136 * 119.70500 * 4.99685 * 4 2 1 6 6 C 1.38295 * 119.09285 * 180.02562 * 5 4 2 7 7 C 1.38883 * 118.51142 * 0.02562 * 6 5 4 8 8 C 1.38020 * 119.32747 * 359.97438 * 7 6 5 9 9 C 1.50694 * 119.57323 * 179.97438 * 8 7 6 10 10 N 1.46499 * 109.46864 * 95.00350 * 9 8 7 11 11 C 1.34781 * 119.99821 * 180.02562 * 10 9 8 12 12 O 1.21580 * 119.99982 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99740 * 180.02562 * 11 10 9 14 14 C 1.39465 * 119.99978 * 184.49473 * 13 11 10 15 15 C 1.38640 * 119.64853 * 174.66041 * 14 13 11 16 16 C 1.40826 * 118.67163 * 179.97438 * 15 14 13 17 17 C 1.41540 * 120.99441 * 179.97438 * 16 15 14 18 18 H 1.08000 * 119.99931 * 149.67079 * 17 16 15 19 19 C 1.40035 * 120.00074 * 329.66421 * 17 16 15 20 20 N 1.30743 * 119.99704 * 167.49222 * 19 17 16 21 21 Si 1.86800 * 119.99979 * 347.49265 * 19 17 16 22 22 H 1.48506 * 109.46901 * 92.50693 * 21 19 17 23 23 H 1.48503 * 109.46993 * 212.50263 * 21 19 17 24 24 H 1.48495 * 109.47225 * 332.50655 * 21 19 17 25 25 C 1.41155 * 118.00561 * 359.97438 * 16 15 14 26 26 C 1.36596 * 119.12986 * 0.02562 * 25 16 15 27 27 N 1.32072 * 121.25595 * 359.74042 * 26 25 16 28 28 N 1.31978 * 120.85556 * 0.26245 * 8 7 6 29 29 H 1.08994 * 109.46808 * 269.99648 * 1 2 3 30 30 H 1.08997 * 109.46996 * 30.00384 * 1 2 3 31 31 H 1.08995 * 109.46788 * 150.00073 * 1 2 3 32 32 H 1.09003 * 109.46898 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.47188 * 300.00000 * 3 2 1 34 34 H 1.09000 * 109.47382 * 60.00276 * 3 2 1 35 35 H 1.08003 * 120.45254 * 0.05007 * 5 4 2 36 36 H 1.08011 * 120.74517 * 179.97438 * 6 5 4 37 37 H 1.08002 * 120.33688 * 180.02562 * 7 6 5 38 38 H 1.08998 * 109.47291 * 335.00297 * 9 8 7 39 39 H 1.09002 * 109.47618 * 215.00287 * 9 8 7 40 40 H 0.96999 * 120.00108 * 359.97438 * 10 9 8 41 41 H 0.96999 * 120.00087 * 4.76573 * 13 11 10 42 42 H 1.08000 * 120.66261 * 359.97438 * 15 14 13 43 43 H 0.97001 * 119.99411 * 180.02562 * 20 19 17 44 44 H 1.08000 * 120.44181 * 179.97438 * 25 16 15 45 45 H 1.08005 * 119.37090 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1601 -1.2037 -0.0005 5 6 1.4622 -2.4028 -0.1063 6 6 2.1664 -3.5930 -0.1050 7 6 3.5502 -3.5445 0.0030 8 6 4.1778 -2.3194 0.1045 9 6 5.6790 -2.2603 0.2226 10 7 6.2656 -2.0613 -1.1050 11 6 7.6036 -1.9778 -1.2448 12 8 8.3235 -2.0671 -0.2692 13 7 8.1433 -1.7941 -2.4661 14 6 9.5289 -1.8014 -2.6244 15 6 10.0743 -1.7233 -3.8966 16 6 11.4759 -1.7318 -4.0326 17 6 12.0849 -1.6548 -5.3080 18 1 13.0518 -1.1862 -5.4173 19 6 11.4339 -2.1863 -6.4281 20 7 11.8668 -1.9066 -7.6296 21 14 9.9469 -3.2948 -6.2054 22 1 8.7084 -2.4765 -6.2495 23 1 9.9133 -4.3027 -7.2955 24 1 10.0368 -3.9863 -4.8943 25 6 12.2552 -1.8193 -2.8590 26 6 11.6275 -1.8923 -1.6480 27 7 10.3100 -1.8773 -1.5570 28 7 3.4798 -1.1993 0.1053 29 1 -0.3633 -0.0001 1.0276 30 1 -0.3633 0.8899 -0.5139 31 1 -0.3633 -0.8900 -0.5138 32 1 3.2691 1.0697 0.0005 33 1 1.9341 1.8403 -0.8899 34 1 1.9342 1.8404 0.8900 35 1 0.3854 -2.4040 -0.1887 36 1 1.6517 -4.5392 -0.1854 37 1 4.1294 -4.4561 0.0066 38 1 6.0472 -3.1947 0.6462 39 1 5.9601 -1.4313 0.8720 40 1 5.6913 -1.9903 -1.8834 41 1 7.5681 -1.6529 -3.2343 42 1 9.4369 -1.6573 -4.7660 43 1 11.4155 -2.2745 -8.4055 44 1 13.3335 -1.8293 -2.9176 45 1 12.2200 -1.9598 -0.7474 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871726441.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:27 Heat of formation + Delta-G solvation = 72.788764 kcal Electronic energy + Delta-G solvation = -28063.076585 eV Core-core repulsion = 24081.613349 eV Total energy + Delta-G solvation = -3981.463236 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.74410 -39.88193 -38.28900 -37.05269 -34.80660 -34.17485 -33.74926 -32.70992 -31.28952 -31.00791 -29.05089 -28.57323 -26.52733 -25.91488 -25.49509 -22.53688 -22.33373 -21.84203 -21.35806 -20.10404 -18.47156 -17.71011 -17.59032 -16.92248 -16.32871 -15.95531 -15.75107 -15.53857 -15.20438 -14.87700 -14.72697 -14.58948 -14.28655 -14.04127 -13.67132 -13.50990 -13.21149 -13.07093 -13.05410 -12.91311 -12.86717 -12.45268 -12.36978 -12.21039 -11.96430 -11.58473 -10.95263 -10.81039 -10.64622 -10.42841 -10.07948 -9.99790 -9.85133 -9.66114 -9.63984 -9.34575 -8.89177 -8.18871 -7.90626 -7.82332 -7.21647 -7.02350 -4.71417 0.85013 1.17703 2.43880 2.55297 2.66106 2.91331 3.02920 3.14745 3.26963 3.65133 3.74191 3.90671 3.99929 4.45838 4.49351 4.55878 4.62331 4.75634 4.81148 4.95078 4.98584 5.12976 5.19897 5.26878 5.30072 5.44148 5.47323 5.63987 5.65782 5.76002 5.80472 6.00078 6.25136 6.27698 6.38824 6.43458 6.56714 6.59005 6.59634 6.95668 6.99803 7.07857 7.22900 7.32410 7.67598 7.86087 7.97190 8.22235 8.25165 8.47023 8.68083 9.02668 9.51839 9.99183 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015481 B = 0.002292 C = 0.002194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1808.200900 B =12215.470404 C =12761.465644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.619 5.619 3 C 0.092 3.908 4 C 0.401 3.599 5 C -0.237 4.237 6 C -0.034 4.034 7 C -0.213 4.213 8 C 0.162 3.838 9 C 0.195 3.805 10 N -0.745 5.745 11 C 0.695 3.305 12 O -0.527 6.527 13 N -0.672 5.672 14 C 0.388 3.612 15 C -0.323 4.323 16 C 0.129 3.871 17 C -0.437 4.437 18 H 0.095 0.905 19 C 0.084 3.916 20 N -0.805 5.805 21 Si 0.919 3.081 22 H -0.272 1.272 23 H -0.292 1.292 24 H -0.244 1.244 25 C -0.271 4.271 26 C 0.129 3.871 27 N -0.552 5.552 28 N -0.527 5.527 29 H 0.051 0.949 30 H 0.071 0.929 31 H 0.070 0.930 32 H 0.093 0.907 33 H 0.052 0.948 34 H 0.051 0.949 35 H 0.132 0.868 36 H 0.134 0.866 37 H 0.135 0.865 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.392 0.608 41 H 0.404 0.596 42 H 0.108 0.892 43 H 0.287 0.713 44 H 0.110 0.890 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.769 -0.450 10.460 26.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.333 5.333 3 C -0.051 4.051 4 C 0.167 3.833 5 C -0.262 4.262 6 C -0.060 4.060 7 C -0.237 4.237 8 C 0.023 3.977 9 C 0.070 3.930 10 N -0.404 5.404 11 C 0.395 3.605 12 O -0.398 6.398 13 N -0.320 5.320 14 C 0.159 3.841 15 C -0.349 4.349 16 C 0.121 3.879 17 C -0.468 4.468 18 H 0.113 0.887 19 C -0.136 4.136 20 N -0.430 5.430 21 Si 0.746 3.254 22 H -0.198 1.198 23 H -0.220 1.220 24 H -0.167 1.167 25 C -0.295 4.295 26 C -0.022 4.022 27 N -0.271 5.271 28 N -0.245 5.245 29 H 0.070 0.930 30 H 0.090 0.910 31 H 0.089 0.911 32 H 0.111 0.889 33 H 0.070 0.930 34 H 0.070 0.930 35 H 0.150 0.850 36 H 0.152 0.848 37 H 0.153 0.847 38 H 0.102 0.898 39 H 0.101 0.899 40 H 0.225 0.775 41 H 0.238 0.762 42 H 0.125 0.875 43 H 0.097 0.903 44 H 0.128 0.872 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -24.132 0.380 12.083 26.991 hybrid contribution -1.452 -0.970 -1.907 2.586 sum -25.584 -0.590 10.176 27.540 Atomic orbital electron populations 1.21685 0.78577 1.03000 1.01522 1.46188 1.05027 1.03142 1.78945 1.21652 0.99144 0.83920 1.00360 1.18281 0.88236 0.85974 0.90840 1.21459 1.01028 0.91928 1.11809 1.21330 0.93840 0.97867 0.92932 1.21736 0.95211 0.98833 1.07872 1.20856 0.95386 0.87827 0.93636 1.19863 0.84993 1.03272 0.84875 1.45049 1.05377 1.80538 1.09427 1.15976 0.81576 0.78882 0.84088 1.91030 1.58835 1.53381 1.36512 1.42622 1.05717 1.74568 1.09055 1.17748 0.81943 0.94397 0.90015 1.21195 0.96192 1.23185 0.94313 1.17698 0.90141 0.86285 0.93806 1.19498 1.05652 1.32473 0.89146 0.88668 1.26186 0.97733 0.95325 0.94327 1.69618 1.38468 1.35603 0.99269 0.86216 0.80248 0.79751 0.79191 1.19823 1.22005 1.16738 1.21680 0.99632 1.14753 0.93386 1.21641 0.89574 0.94767 0.96251 1.67324 1.05237 1.24377 1.30161 1.66909 1.06111 1.31500 1.19970 0.93004 0.90994 0.91117 0.88874 0.92972 0.93025 0.85001 0.84779 0.84706 0.89819 0.89940 0.77461 0.76190 0.87486 0.90263 0.87216 0.85342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.48 10.33 59.85 0.62 1.10 16 2 N -0.62 -5.29 3.39 -189.67 -0.64 -5.94 16 3 C 0.09 0.74 10.71 59.85 0.64 1.38 16 4 C 0.40 4.14 7.37 -155.02 -1.14 3.00 16 5 C -0.24 -1.98 9.27 -39.23 -0.36 -2.34 16 6 C -0.03 -0.27 10.16 -39.32 -0.40 -0.67 16 7 C -0.21 -1.98 9.71 -39.42 -0.38 -2.36 16 8 C 0.16 1.80 6.14 -82.61 -0.51 1.29 16 9 C 0.19 2.45 5.98 -5.20 -0.03 2.42 16 10 N -0.75 -10.34 5.55 -66.42 -0.37 -10.71 16 11 C 0.70 13.06 8.52 -86.91 -0.74 12.32 16 12 O -0.53 -12.07 14.60 5.30 0.08 -11.99 16 13 N -0.67 -12.89 5.40 -15.86 -0.09 -12.98 16 14 C 0.39 9.08 7.42 -154.68 -1.15 7.93 16 15 C -0.32 -7.78 6.96 -38.45 -0.27 -8.05 16 16 C 0.13 3.28 5.17 -106.55 -0.55 2.73 16 17 C -0.44 -11.60 9.67 -37.65 -0.36 -11.97 16 18 H 0.10 2.63 8.06 -52.49 -0.42 2.20 16 19 C 0.08 2.16 5.48 -17.34 -0.10 2.06 16 20 N -0.81 -20.91 13.92 55.55 0.77 -20.13 16 21 Si 0.92 20.39 24.43 -169.99 -4.15 16.24 16 22 H -0.27 -5.67 6.67 56.52 0.38 -5.29 16 23 H -0.29 -6.27 7.11 56.52 0.40 -5.87 16 24 H -0.24 -5.69 6.66 56.52 0.38 -5.32 16 25 C -0.27 -6.39 9.85 -39.07 -0.38 -6.77 16 26 C 0.13 2.97 11.10 -18.04 -0.20 2.77 16 27 N -0.55 -13.64 7.86 -12.75 -0.10 -13.74 16 28 N -0.53 -6.26 8.77 -8.67 -0.08 -6.33 16 29 H 0.05 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.07 0.27 8.07 -51.93 -0.42 -0.15 16 31 H 0.07 0.29 5.97 -51.93 -0.31 -0.02 16 32 H 0.09 0.94 6.82 -51.93 -0.35 0.58 16 33 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.13 0.78 6.03 -52.48 -0.32 0.46 16 36 H 0.13 0.69 8.06 -52.48 -0.42 0.27 16 37 H 0.14 1.07 8.06 -52.49 -0.42 0.65 16 38 H 0.08 1.02 8.04 -51.93 -0.42 0.60 16 39 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 40 H 0.39 4.58 8.48 -40.82 -0.35 4.24 16 41 H 0.40 6.30 8.71 -40.82 -0.36 5.94 16 42 H 0.11 2.47 4.42 -52.49 -0.23 2.24 16 43 H 0.29 6.73 8.29 -40.82 -0.34 6.39 16 44 H 0.11 2.37 8.06 -52.49 -0.42 1.95 16 45 H 0.13 2.55 8.06 -52.48 -0.42 2.13 16 LS Contribution 375.89 15.07 5.66 5.66 Total: -1.00 -33.70 375.89 -9.97 -43.67 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: -5.74 Total: 11.40 kcal Atomic # 6 Polarization: 10.17 SS G_CDS: -5.32 Total: 4.85 kcal Atomic # 7 Polarization: -69.33 SS G_CDS: -0.50 Total: -69.83 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: 0.08 Total: -11.99 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -4.15 Total: 16.24 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.70 -9.97 -43.67 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871726441.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.456 kcal (2) G-P(sol) polarization free energy of solvation -33.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.970 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.668 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds