Wall clock time and date at job start Sat Apr 11 2020 06:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46904 * 110.99637 * 2 1 4 4 C 1.39704 * 111.00207 * 123.95899 * 2 1 3 5 5 C 1.39312 * 120.49202 * 299.99442 * 4 2 1 6 6 C 1.38490 * 118.35582 * 179.97438 * 5 4 2 7 7 C 1.38271 * 119.24518 * 0.02562 * 6 5 4 8 8 N 1.31850 * 120.92875 * 359.97438 * 7 6 5 9 9 C 1.31824 * 121.79736 * 359.72676 * 8 7 6 10 10 C 1.50701 * 119.66985 * 180.28709 * 9 8 7 11 11 N 1.46500 * 109.47125 * 270.24923 * 10 9 8 12 12 C 1.34777 * 119.99470 * 180.02562 * 11 10 9 13 13 O 1.21577 * 120.00570 * 0.02562 * 12 11 10 14 14 N 1.34782 * 119.99809 * 179.97438 * 12 11 10 15 15 C 1.39455 * 119.99877 * 175.46191 * 14 12 11 16 16 C 1.38652 * 119.64463 * 186.28696 * 15 14 12 17 17 C 1.40820 * 118.67177 * 179.97438 * 16 15 14 18 18 C 1.41541 * 120.99443 * 179.97438 * 17 16 15 19 19 H 1.08001 * 119.99895 * 201.15174 * 18 17 16 20 20 C 1.40033 * 120.00469 * 21.14883 * 18 17 16 21 21 N 1.30744 * 119.99532 * 12.10541 * 20 18 17 22 22 Si 1.86798 * 120.00346 * 192.10814 * 20 18 17 23 23 H 1.48502 * 109.47143 * 89.99680 * 22 20 18 24 24 H 1.48491 * 109.47059 * 209.99803 * 22 20 18 25 25 H 1.48500 * 109.46858 * 329.99791 * 22 20 18 26 26 C 1.41158 * 118.00678 * 359.97438 * 17 16 15 27 27 C 1.36595 * 119.12886 * 0.02562 * 26 17 16 28 28 N 1.32066 * 121.25781 * 359.72121 * 27 26 17 29 29 H 1.08996 * 109.47564 * 59.99852 * 1 2 3 30 30 H 1.09000 * 109.47358 * 299.99397 * 1 2 3 31 31 H 1.09007 * 109.47030 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.46817 * 60.00751 * 3 2 1 33 33 H 1.09000 * 109.46931 * 180.02562 * 3 2 1 34 34 H 1.09000 * 109.47342 * 300.00017 * 3 2 1 35 35 H 1.08001 * 120.81864 * 0.02562 * 5 4 2 36 36 H 1.08004 * 120.37550 * 180.02562 * 6 5 4 37 37 H 1.07999 * 119.53774 * 179.97438 * 7 6 5 38 38 H 1.09006 * 109.47228 * 30.25233 * 10 9 8 39 39 H 1.09001 * 109.47001 * 150.24901 * 10 9 8 40 40 H 0.96995 * 120.00355 * 0.02562 * 11 10 9 41 41 H 0.97004 * 119.99663 * 355.45826 * 14 12 11 42 42 H 1.08002 * 120.66324 * 0.02562 * 16 15 14 43 43 H 0.97000 * 119.99877 * 180.02562 * 21 20 18 44 44 H 1.08004 * 120.43765 * 179.97438 * 26 17 16 45 45 H 1.07999 * 119.37007 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.9697 -0.7285 1.0818 5 6 1.6628 -0.3550 2.3883 6 6 2.1824 -1.1089 3.4273 7 6 2.9827 -2.1985 3.1368 8 7 3.2546 -2.5261 1.8890 9 6 2.7761 -1.8394 0.8705 10 6 3.1124 -2.2604 -0.5369 11 7 4.3410 -1.5884 -0.9672 12 6 4.8360 -1.8140 -2.2003 13 8 4.2628 -2.5749 -2.9557 14 7 5.9660 -1.1954 -2.5964 15 6 6.5302 -1.4999 -3.8349 16 6 7.7594 -0.9592 -4.1801 17 6 8.3104 -1.2807 -5.4355 18 6 9.5616 -0.7559 -5.8384 19 1 9.8182 -0.7159 -6.8867 20 6 10.4670 -0.2885 -4.8777 21 7 10.2685 -0.5477 -3.6117 22 14 11.9581 0.7054 -5.4050 23 1 11.6108 2.1492 -5.4195 24 1 13.0707 0.4735 -4.4493 25 1 12.3782 0.2836 -6.7655 26 6 7.5774 -2.1421 -6.2801 27 6 6.3736 -2.6261 -5.8530 28 7 5.8888 -2.3075 -4.6666 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3634 0.5137 0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6459 1.8947 0.8901 33 1 3.0850 1.3424 -0.0005 34 1 1.6458 1.8949 -0.8900 35 1 1.0344 0.5009 2.5860 36 1 1.9651 -0.8488 4.4527 37 1 3.3908 -2.7895 3.9434 38 1 3.2588 -3.3401 -0.5680 39 1 2.2951 -1.9852 -1.2036 40 1 4.7982 -0.9811 -0.3647 41 1 6.3868 -0.5383 -2.0201 42 1 8.2841 -0.3051 -3.4995 43 1 10.8954 -0.2236 -2.9462 44 1 7.9629 -2.4143 -7.2516 45 1 5.8093 -3.2851 -6.4962 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871731032.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:30 Heat of formation + Delta-G solvation = 69.629938 kcal Electronic energy + Delta-G solvation = -28581.532471 eV Core-core repulsion = 24599.932258 eV Total energy + Delta-G solvation = -3981.600213 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.00869 -39.55872 -37.90760 -37.51935 -34.85905 -34.09826 -33.62062 -32.28962 -30.91047 -30.38751 -28.54853 -27.95858 -26.44746 -25.92216 -25.34681 -22.58699 -21.89113 -21.78847 -21.35781 -19.97969 -18.19589 -17.57061 -17.34428 -17.02374 -16.41046 -15.77727 -15.55541 -15.23251 -14.86463 -14.58728 -14.42261 -14.29809 -14.09720 -13.96627 -13.64259 -13.48725 -13.11448 -12.80896 -12.77226 -12.69093 -12.53110 -12.52360 -12.07084 -12.03073 -11.95364 -11.38211 -11.14898 -10.84261 -10.22778 -10.16585 -10.02687 -9.90658 -9.68057 -9.53285 -9.33039 -9.15842 -8.86878 -8.60451 -7.91049 -7.63355 -6.90456 -6.68842 -4.57325 0.64993 0.84744 2.77379 2.87593 3.03648 3.07020 3.07627 3.32021 3.40820 3.57322 3.87608 4.00585 4.06288 4.37755 4.46174 4.63880 4.75115 4.77024 4.80327 4.90031 5.04254 5.10405 5.16898 5.24434 5.51016 5.55524 5.58540 5.72178 5.80056 5.88142 5.99494 6.06444 6.17838 6.44870 6.63632 6.71771 6.82228 6.84835 6.89378 7.00521 7.24303 7.39950 7.53721 7.58848 7.70462 7.95330 8.19498 8.50792 8.55748 8.80975 8.82332 9.32765 9.84270 10.11687 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015368 B = 0.002390 C = 0.002279 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1821.481970 B =11714.108406 C =12284.415836 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 N -0.501 5.501 3 C 0.031 3.969 4 C 0.056 3.944 5 C -0.110 4.110 6 C -0.160 4.160 7 C 0.096 3.904 8 N -0.460 5.460 9 C 0.135 3.865 10 C 0.204 3.796 11 N -0.742 5.742 12 C 0.696 3.304 13 O -0.532 6.532 14 N -0.668 5.668 15 C 0.356 3.644 16 C -0.251 4.251 17 C 0.139 3.861 18 C -0.450 4.450 19 H 0.081 0.919 20 C 0.074 3.926 21 N -0.791 5.791 22 Si 0.914 3.086 23 H -0.268 1.268 24 H -0.277 1.277 25 H -0.261 1.261 26 C -0.286 4.286 27 C 0.119 3.881 28 N -0.552 5.552 29 H 0.078 0.922 30 H 0.029 0.971 31 H 0.071 0.929 32 H 0.029 0.971 33 H 0.072 0.928 34 H 0.078 0.922 35 H 0.131 0.869 36 H 0.135 0.865 37 H 0.159 0.841 38 H 0.076 0.924 39 H 0.092 0.908 40 H 0.388 0.612 41 H 0.402 0.598 42 H 0.139 0.861 43 H 0.280 0.720 44 H 0.100 0.900 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.525 5.476 15.946 22.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.222 5.222 3 C -0.116 4.116 4 C -0.040 4.040 5 C -0.138 4.138 6 C -0.181 4.181 7 C -0.061 4.061 8 N -0.169 5.169 9 C -0.004 4.004 10 C 0.079 3.921 11 N -0.400 5.400 12 C 0.395 3.605 13 O -0.403 6.403 14 N -0.315 5.315 15 C 0.130 3.870 16 C -0.277 4.277 17 C 0.131 3.869 18 C -0.481 4.481 19 H 0.099 0.901 20 C -0.144 4.144 21 N -0.417 5.417 22 Si 0.739 3.261 23 H -0.193 1.193 24 H -0.203 1.203 25 H -0.185 1.185 26 C -0.310 4.310 27 C -0.035 4.035 28 N -0.271 5.271 29 H 0.097 0.903 30 H 0.048 0.952 31 H 0.090 0.910 32 H 0.047 0.953 33 H 0.090 0.910 34 H 0.097 0.903 35 H 0.149 0.851 36 H 0.153 0.847 37 H 0.176 0.824 38 H 0.094 0.906 39 H 0.110 0.890 40 H 0.220 0.780 41 H 0.237 0.763 42 H 0.156 0.844 43 H 0.091 0.909 44 H 0.118 0.882 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -15.147 3.457 15.124 21.682 hybrid contribution 1.149 2.603 1.354 3.151 sum -13.998 6.060 16.478 22.454 Atomic orbital electron populations 1.22486 0.85514 1.02760 1.01208 1.59555 1.08563 1.14441 1.39647 1.22452 1.01179 0.86839 1.01134 1.19701 0.98775 0.96094 0.89477 1.22118 0.98885 0.99616 0.93131 1.22104 0.99061 0.96737 1.00152 1.22835 0.94749 0.94749 0.93815 1.67634 1.20418 1.29370 0.99476 1.21363 0.93206 0.90555 0.95311 1.19703 0.87444 0.97250 0.87695 1.44947 1.28424 1.51407 1.15216 1.15975 0.81187 0.81758 0.81552 1.91008 1.59098 1.37948 1.52268 1.42524 1.26175 1.44031 1.18807 1.17993 0.89732 0.94584 0.84703 1.21780 0.94730 1.09250 1.01908 1.17579 0.91688 0.87439 0.90199 1.19609 0.98885 1.35007 0.94609 0.90104 1.25975 0.99677 0.94258 0.94472 1.69748 1.35129 1.35025 1.01789 0.86208 0.79901 0.80282 0.79722 1.19274 1.20254 1.18537 1.21636 0.99733 1.07099 1.02543 1.21466 0.93222 0.97063 0.91723 1.67210 1.35805 1.19493 1.04628 0.90306 0.95247 0.90984 0.95271 0.90963 0.90307 0.85096 0.84716 0.82379 0.90580 0.89034 0.78011 0.76343 0.84382 0.90889 0.88174 0.86116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 9.29 60.06 0.56 0.76 16 2 N -0.50 -4.79 3.95 -186.72 -0.74 -5.53 16 3 C 0.03 0.25 9.34 60.07 0.56 0.81 16 4 C 0.06 0.56 4.69 -83.63 -0.39 0.17 16 5 C -0.11 -0.86 8.79 -39.09 -0.34 -1.21 16 6 C -0.16 -1.14 10.10 -39.48 -0.40 -1.54 16 7 C 0.10 0.84 11.18 -17.53 -0.20 0.65 16 8 N -0.46 -5.51 10.27 -9.31 -0.10 -5.60 16 9 C 0.13 1.61 6.17 -82.35 -0.51 1.10 16 10 C 0.20 2.93 5.72 -5.19 -0.03 2.90 16 11 N -0.74 -11.43 5.55 -66.41 -0.37 -11.79 16 12 C 0.70 14.23 8.52 -86.91 -0.74 13.49 16 13 O -0.53 -13.19 14.60 5.30 0.08 -13.11 16 14 N -0.67 -13.84 5.39 -15.86 -0.09 -13.93 16 15 C 0.36 8.97 7.42 -154.68 -1.15 7.82 16 16 C -0.25 -6.52 8.67 -38.45 -0.33 -6.85 16 17 C 0.14 3.74 5.65 -106.55 -0.60 3.14 16 18 C -0.45 -11.71 9.15 -37.65 -0.34 -12.05 16 19 H 0.08 2.01 7.88 -52.49 -0.41 1.60 16 20 C 0.07 1.81 5.31 -17.34 -0.09 1.71 16 21 N -0.79 -19.61 10.50 55.55 0.58 -19.03 16 22 Si 0.91 18.11 29.58 -169.99 -5.03 13.08 16 23 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 24 H -0.28 -5.38 7.11 56.52 0.40 -4.98 16 25 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 26 C -0.29 -7.21 9.85 -39.07 -0.38 -7.59 16 27 C 0.12 2.97 11.10 -18.04 -0.20 2.77 16 28 N -0.55 -14.71 7.86 -12.75 -0.10 -14.81 16 29 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 30 H 0.03 0.18 7.33 -51.93 -0.38 -0.20 16 31 H 0.07 0.56 8.13 -51.92 -0.42 0.14 16 32 H 0.03 0.20 7.54 -51.93 -0.39 -0.20 16 33 H 0.07 0.64 8.12 -51.93 -0.42 0.22 16 34 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.13 0.79 7.23 -52.49 -0.38 0.41 16 36 H 0.13 0.58 8.06 -52.48 -0.42 0.16 16 37 H 0.16 0.97 8.06 -52.49 -0.42 0.55 16 38 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 39 H 0.09 1.37 7.45 -51.93 -0.39 0.99 16 40 H 0.39 5.07 8.48 -40.82 -0.35 4.73 16 41 H 0.40 6.91 8.72 -40.82 -0.36 6.55 16 42 H 0.14 3.56 5.81 -52.49 -0.30 3.25 16 43 H 0.28 6.28 8.29 -40.82 -0.34 5.95 16 44 H 0.10 2.31 8.06 -52.48 -0.42 1.89 16 45 H 0.12 2.64 8.06 -52.49 -0.42 2.22 16 LS Contribution 381.62 15.07 5.75 5.75 Total: -1.00 -33.60 381.62 -10.49 -44.09 By element: Atomic # 1 Polarization: 20.70 SS G_CDS: -5.90 Total: 14.80 kcal Atomic # 6 Polarization: 10.68 SS G_CDS: -4.60 Total: 6.08 kcal Atomic # 7 Polarization: -69.89 SS G_CDS: -0.80 Total: -70.69 kcal Atomic # 8 Polarization: -13.19 SS G_CDS: 0.08 Total: -13.11 kcal Atomic # 14 Polarization: 18.11 SS G_CDS: -5.03 Total: 13.08 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.60 -10.49 -44.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871731032.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.720 kcal (2) G-P(sol) polarization free energy of solvation -33.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.125 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds