Wall clock time and date at job start Sat Apr 11 2020 06:21:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.40089 * 126.03455 * 2 1 4 4 C 1.30843 * 108.20566 * 180.02562 * 3 2 1 5 5 C 1.39874 * 108.20181 * 359.77631 * 4 3 2 6 6 C 1.50697 * 126.03816 * 180.23372 * 5 4 3 7 7 C 1.52994 * 117.49762 * 8.77852 * 6 5 4 8 8 C 1.53000 * 117.50028 * 300.15274 * 6 5 4 9 9 C 1.34944 * 126.04072 * 180.02562 * 2 1 3 10 10 C 1.50700 * 126.12627 * 359.94029 * 9 2 1 11 11 N 1.46498 * 109.47247 * 90.02872 * 10 9 2 12 12 C 1.34770 * 119.99900 * 180.02562 * 11 10 9 13 13 O 1.21574 * 120.00374 * 359.97438 * 12 11 10 14 14 N 1.34781 * 119.99968 * 179.97438 * 12 11 10 15 15 C 1.39457 * 120.00208 * 174.94448 * 14 12 11 16 16 C 1.38645 * 119.65044 * 174.64989 * 15 14 12 17 17 C 1.40816 * 118.67416 * 180.27409 * 16 15 14 18 18 C 1.41545 * 120.99635 * 179.70262 * 17 16 15 19 19 H 1.08011 * 119.99808 * 26.10892 * 18 17 16 20 20 C 1.40032 * 120.00242 * 206.10408 * 18 17 16 21 21 N 1.30736 * 119.99630 * 9.79452 * 20 18 17 22 22 Si 1.86803 * 120.00124 * 189.79098 * 20 18 17 23 23 H 1.48502 * 109.46935 * 60.00214 * 22 20 18 24 24 H 1.48497 * 109.46983 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.46947 * 300.00188 * 22 20 18 26 26 C 1.41159 * 118.00763 * 359.46740 * 17 16 15 27 27 C 1.36595 * 119.12685 * 0.51506 * 26 17 16 28 28 N 1.32073 * 121.25470 * 359.74619 * 27 26 17 29 29 H 1.09002 * 109.46862 * 269.97380 * 1 2 3 30 30 H 1.08998 * 109.47196 * 29.97582 * 1 2 3 31 31 H 1.09002 * 109.46552 * 149.98105 * 1 2 3 32 32 H 1.07999 * 125.89432 * 180.02562 * 4 3 2 33 33 H 1.09006 * 115.54312 * 154.48149 * 6 5 4 34 34 H 1.08996 * 117.50284 * 359.97438 * 7 6 5 35 35 H 1.08999 * 117.49659 * 145.02205 * 7 6 5 36 36 H 1.09002 * 117.49862 * 214.98032 * 8 6 5 37 37 H 1.08997 * 117.49553 * 359.97438 * 8 6 5 38 38 H 1.08996 * 109.47048 * 330.02085 * 10 9 2 39 39 H 1.09002 * 109.46684 * 210.02795 * 10 9 2 40 40 H 0.96997 * 119.99549 * 359.97438 * 11 10 9 41 41 H 0.97002 * 119.99950 * 354.94810 * 14 12 11 42 42 H 1.08004 * 120.65729 * 0.02562 * 16 15 14 43 43 H 0.97003 * 119.99631 * 180.02562 * 21 20 18 44 44 H 1.07999 * 120.44246 * 180.28167 * 26 17 16 45 45 H 1.07995 * 119.37413 * 179.76398 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1328 0.0000 4 6 3.5347 0.7322 -0.0006 5 6 3.5438 -0.6665 0.0043 6 6 4.7681 -1.5451 0.0104 7 6 6.1235 -0.8666 0.2186 8 6 5.7425 -1.4072 -1.1612 9 6 2.2590 -1.0912 -0.0005 10 6 1.7975 -2.5258 0.0001 11 7 1.6474 -2.9911 -1.3808 12 6 1.2410 -4.2524 -1.6265 13 8 0.9994 -5.0042 -0.7021 14 7 1.1025 -4.6803 -2.8970 15 6 0.7846 -6.0139 -3.1529 16 6 0.5344 -6.4218 -4.4541 17 6 0.2096 -7.7719 -4.6884 18 6 -0.0612 -8.2401 -5.9964 19 1 0.3640 -7.7333 -6.8502 20 6 -0.8802 -9.3604 -6.1835 21 7 -1.5474 -9.8580 -5.1753 22 14 -1.0195 -10.1438 -7.8736 23 1 0.3213 -10.6011 -8.3192 24 1 -1.9411 -11.3061 -7.8059 25 1 -1.5486 -9.1472 -8.8390 26 6 0.1672 -8.6453 -3.5803 27 6 0.4294 -8.1515 -2.3340 28 7 0.7254 -6.8776 -2.1500 29 1 -0.3633 -0.0005 1.0277 30 1 -0.3633 0.8902 -0.5134 31 1 -0.3632 -0.8899 -0.5142 32 1 4.4054 1.3713 -0.0003 33 1 4.6314 -2.5388 0.4371 34 1 6.1297 0.2153 0.3507 35 1 6.8789 -1.4138 0.7824 36 1 6.2473 -2.3101 -1.5049 37 1 5.4977 -0.6812 -1.9365 38 1 0.8393 -2.5989 0.5144 39 1 2.5337 -3.1440 0.5139 40 1 1.8398 -2.3911 -2.1183 41 1 1.2239 -4.0608 -3.6335 42 1 0.5836 -5.7173 -5.2713 43 1 -2.1144 -10.6343 -5.3049 44 1 -0.0732 -9.6895 -3.7155 45 1 0.3943 -8.8154 -1.4829 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871735361.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:33 Heat of formation + Delta-G solvation = 119.535496 kcal Electronic energy + Delta-G solvation = -28234.738944 eV Core-core repulsion = 24255.302799 eV Total energy + Delta-G solvation = -3979.436145 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.73181 -39.83083 -38.06686 -37.27285 -35.10571 -34.32081 -33.59122 -33.17340 -30.92229 -30.65334 -28.53481 -27.07820 -26.18588 -25.88827 -23.17762 -22.51804 -22.05276 -21.70483 -20.61472 -20.19206 -19.62408 -18.13001 -17.92317 -16.73073 -16.13366 -15.98713 -15.70396 -15.27494 -15.12808 -14.62658 -14.59310 -14.38510 -14.22911 -14.08007 -13.65919 -13.37795 -13.07854 -12.98253 -12.92622 -12.52936 -12.37025 -12.21354 -12.00265 -11.70313 -11.43643 -11.24320 -11.07793 -10.97887 -10.80203 -10.52518 -10.40470 -10.08608 -9.79177 -9.74160 -9.51775 -9.40786 -8.98757 -8.45114 -8.01107 -7.74166 -7.03761 -6.75857 -4.63604 1.39670 2.19154 2.36756 2.70977 2.78351 3.00876 3.02468 3.06335 3.22865 3.78980 3.80604 3.85153 4.16456 4.23272 4.48690 4.63108 4.70184 4.71014 4.85857 4.88755 4.91979 5.05240 5.11244 5.15642 5.44892 5.46686 5.49729 5.69801 5.70829 5.88414 5.93809 5.94386 6.05503 6.33549 6.44691 6.48541 6.58987 6.67206 6.76451 6.91575 7.11594 7.20026 7.40254 7.42731 7.53579 7.88899 8.06489 8.27699 8.47751 8.73084 8.74566 9.06159 9.71901 10.09605 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.019104 B = 0.002095 C = 0.002041 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.284744 B =13364.397302 C =13712.115751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.363 5.363 3 N -0.289 5.289 4 C 0.049 3.951 5 C -0.182 4.182 6 C -0.077 4.077 7 C -0.176 4.176 8 C -0.172 4.172 9 C 0.072 3.928 10 C 0.209 3.791 11 N -0.750 5.750 12 C 0.694 3.306 13 O -0.529 6.529 14 N -0.669 5.669 15 C 0.366 3.634 16 C -0.305 4.305 17 C 0.147 3.853 18 C -0.455 4.455 19 H 0.080 0.920 20 C 0.075 3.925 21 N -0.791 5.791 22 Si 0.916 3.084 23 H -0.263 1.263 24 H -0.277 1.277 25 H -0.265 1.265 26 C -0.223 4.223 27 C 0.104 3.896 28 N -0.553 5.553 29 H 0.077 0.923 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.181 0.819 33 H 0.111 0.889 34 H 0.093 0.907 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.093 0.907 38 H 0.076 0.924 39 H 0.092 0.908 40 H 0.393 0.607 41 H 0.402 0.598 42 H 0.101 0.899 43 H 0.283 0.717 44 H 0.131 0.869 45 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.883 16.963 6.540 19.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.146 5.146 3 N -0.110 5.110 4 C -0.137 4.137 5 C -0.194 4.194 6 C -0.096 4.096 7 C -0.213 4.213 8 C -0.209 4.209 9 C -0.056 4.056 10 C 0.083 3.917 11 N -0.409 5.409 12 C 0.394 3.606 13 O -0.399 6.399 14 N -0.317 5.317 15 C 0.137 3.863 16 C -0.331 4.331 17 C 0.138 3.862 18 C -0.486 4.486 19 H 0.098 0.902 20 C -0.144 4.144 21 N -0.416 5.416 22 Si 0.740 3.260 23 H -0.188 1.188 24 H -0.202 1.202 25 H -0.189 1.189 26 C -0.246 4.246 27 C -0.046 4.046 28 N -0.272 5.272 29 H 0.096 0.904 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.198 0.802 33 H 0.129 0.871 34 H 0.112 0.888 35 H 0.114 0.886 36 H 0.114 0.886 37 H 0.112 0.888 38 H 0.094 0.906 39 H 0.110 0.890 40 H 0.226 0.774 41 H 0.236 0.764 42 H 0.119 0.881 43 H 0.094 0.906 44 H 0.149 0.851 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 6.685 17.380 8.412 20.433 hybrid contribution 0.268 -0.612 -2.338 2.432 sum 6.953 16.768 6.073 19.141 Atomic orbital electron populations 1.21941 0.73904 1.04859 1.03739 1.48423 1.06630 1.03149 1.56376 1.77386 1.01604 1.07938 1.24068 1.23686 0.95179 0.94308 1.00502 1.19086 0.92495 0.93130 1.14689 1.20230 0.87145 0.98683 1.03536 1.22960 0.97721 1.00575 1.00032 1.23002 1.02957 1.03302 0.91661 1.20735 0.90816 0.90123 1.03892 1.19434 1.02060 0.86272 0.83916 1.45161 1.75080 1.13154 1.07549 1.16002 0.79156 0.81419 0.84048 1.91035 1.53245 1.53413 1.42230 1.42548 1.72849 1.09831 1.06423 1.17732 0.95771 0.82765 0.90027 1.21175 1.21185 0.97192 0.93593 1.17586 0.85659 0.89223 0.93722 1.19531 1.26157 1.10057 0.92892 0.90215 1.25963 0.93588 0.95755 0.99055 1.69744 1.19880 1.19638 1.32384 0.86243 0.79189 0.78892 0.81672 1.18750 1.20218 1.18942 1.22079 1.08086 1.01666 0.92757 1.21626 0.96554 0.90501 0.95957 1.67170 1.23967 1.03242 1.32824 0.90432 0.89066 0.89080 0.80163 0.87084 0.88837 0.88614 0.88585 0.88844 0.90627 0.89004 0.77365 0.76351 0.88119 0.90596 0.85105 0.86018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.72 11.10 59.85 0.66 1.38 16 2 N -0.36 -3.74 4.01 -63.88 -0.26 -3.99 16 3 N -0.29 -3.29 12.58 30.63 0.39 -2.91 16 4 C 0.05 0.48 11.35 -17.36 -0.20 0.28 16 5 C -0.18 -1.83 5.76 -105.05 -0.61 -2.43 16 6 C -0.08 -0.70 5.95 -91.78 -0.55 -1.24 16 7 C -0.18 -1.30 10.02 -26.73 -0.27 -1.57 16 8 C -0.17 -1.41 10.23 -26.73 -0.27 -1.69 16 9 C 0.07 0.75 6.30 -82.26 -0.52 0.23 16 10 C 0.21 2.37 5.47 -5.19 -0.03 2.34 16 11 N -0.75 -9.33 5.55 -66.42 -0.37 -9.70 16 12 C 0.69 12.34 8.51 -86.92 -0.74 11.60 16 13 O -0.53 -11.86 14.64 5.30 0.08 -11.79 16 14 N -0.67 -12.09 5.40 -15.87 -0.09 -12.18 16 15 C 0.37 8.49 7.41 -154.68 -1.15 7.34 16 16 C -0.31 -7.24 9.74 -38.46 -0.37 -7.62 16 17 C 0.15 3.82 5.60 -106.55 -0.60 3.22 16 18 C -0.46 -11.58 9.13 -37.65 -0.34 -11.93 16 19 H 0.08 1.92 7.87 -52.48 -0.41 1.51 16 20 C 0.08 1.82 5.31 -17.35 -0.09 1.72 16 21 N -0.79 -19.78 10.70 55.55 0.59 -19.19 16 22 Si 0.92 17.92 29.57 -169.99 -5.03 12.89 16 23 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 24 H -0.28 -5.30 7.11 56.52 0.40 -4.90 16 25 H -0.26 -5.12 7.11 56.52 0.40 -4.71 16 26 C -0.22 -5.76 8.73 -39.07 -0.34 -6.10 16 27 C 0.10 2.59 11.10 -18.04 -0.20 2.39 16 28 N -0.55 -14.07 7.89 -12.76 -0.10 -14.17 16 29 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.09 0.64 7.66 -51.93 -0.40 0.24 16 32 H 0.18 1.29 7.20 -52.49 -0.38 0.91 16 33 H 0.11 1.07 7.41 -51.93 -0.38 0.69 16 34 H 0.09 0.60 6.98 -51.93 -0.36 0.23 16 35 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.08 0.86 7.72 -51.93 -0.40 0.46 16 39 H 0.09 1.10 7.32 -51.93 -0.38 0.72 16 40 H 0.39 4.04 8.48 -40.82 -0.35 3.70 16 41 H 0.40 5.63 8.72 -40.82 -0.36 5.28 16 42 H 0.10 2.14 8.06 -52.48 -0.42 1.72 16 43 H 0.28 6.44 8.29 -40.82 -0.34 6.10 16 44 H 0.13 3.43 6.11 -52.49 -0.32 3.11 16 45 H 0.12 2.73 8.06 -52.49 -0.42 2.31 16 LS Contribution 383.97 15.07 5.79 5.79 Total: -1.00 -33.05 383.97 -10.43 -43.49 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: -5.83 Total: 13.80 kcal Atomic # 6 Polarization: 3.56 SS G_CDS: -5.61 Total: -2.05 kcal Atomic # 7 Polarization: -62.30 SS G_CDS: 0.17 Total: -62.13 kcal Atomic # 8 Polarization: -11.86 SS G_CDS: 0.08 Total: -11.79 kcal Atomic # 14 Polarization: 17.92 SS G_CDS: -5.03 Total: 12.89 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -33.05 -10.43 -43.49 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871735361.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.024 kcal (2) G-P(sol) polarization free energy of solvation -33.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.970 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.489 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds