Wall clock time and date at job start Sat Apr 11 2020 06:21:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46895 * 111.00566 * 2 1 4 4 C 1.46900 * 111.00249 * 123.95915 * 2 1 3 5 5 C 1.53001 * 109.47174 * 66.03994 * 4 2 1 6 6 C 1.53000 * 109.46978 * 180.02562 * 5 4 2 7 7 N 1.46504 * 109.47090 * 179.97438 * 6 5 4 8 8 C 1.46504 * 120.00006 * 270.00120 * 7 6 5 9 9 C 1.50695 * 109.46705 * 269.99650 * 8 7 6 10 10 H 1.08001 * 120.00130 * 0.02562 * 9 8 7 11 11 C 1.37884 * 119.99828 * 179.97438 * 9 8 7 12 12 N 1.31515 * 119.99553 * 179.97438 * 11 9 8 13 13 Si 1.86791 * 119.99804 * 0.02562 * 11 9 8 14 14 H 1.48496 * 109.47453 * 89.99737 * 13 11 9 15 15 H 1.48500 * 109.46781 * 209.99664 * 13 11 9 16 16 H 1.48505 * 109.47455 * 329.99506 * 13 11 9 17 17 C 1.34778 * 120.00028 * 89.99390 * 7 6 5 18 18 O 1.21906 * 119.99904 * 0.02562 * 17 7 6 19 19 C 1.40391 * 120.00277 * 179.97438 * 17 7 6 20 20 C 1.36441 * 120.00129 * 171.52291 * 19 17 7 21 21 S 1.77251 * 126.26494 * 151.51051 * 20 19 17 22 22 C 1.82387 * 94.46556 * 179.97438 * 21 20 19 23 23 C 1.51114 * 103.49617 * 0.28490 * 22 21 20 24 24 O 1.21254 * 122.89968 * 179.77167 * 23 22 21 25 25 N 1.32214 * 114.20475 * 359.79247 * 23 22 21 26 26 C 1.46498 * 119.81881 * 179.97438 * 25 23 22 27 27 H 1.09003 * 109.47104 * 296.04775 * 1 2 3 28 28 H 1.09004 * 109.46806 * 56.04291 * 1 2 3 29 29 H 1.08994 * 109.47533 * 176.04530 * 1 2 3 30 30 H 1.08997 * 109.47691 * 183.95902 * 3 2 1 31 31 H 1.09008 * 109.47003 * 303.95565 * 3 2 1 32 32 H 1.09003 * 109.46992 * 63.95047 * 3 2 1 33 33 H 1.09000 * 109.46310 * 306.04569 * 4 2 1 34 34 H 1.08989 * 109.47639 * 186.04182 * 4 2 1 35 35 H 1.08997 * 109.46915 * 60.00263 * 5 4 2 36 36 H 1.09005 * 109.46758 * 300.00396 * 5 4 2 37 37 H 1.08994 * 109.47346 * 60.00437 * 6 5 4 38 38 H 1.08994 * 109.46727 * 299.99701 * 6 5 4 39 39 H 1.08998 * 109.47089 * 29.99585 * 8 7 6 40 40 H 1.08994 * 109.46780 * 149.99989 * 8 7 6 41 41 H 0.97002 * 119.99237 * 179.97438 * 12 11 9 42 42 H 1.08005 * 119.99781 * 351.80248 * 19 17 7 43 43 H 1.08998 * 110.79427 * 241.69273 * 22 21 20 44 44 H 1.09007 * 110.43654 * 118.70317 * 22 21 20 45 45 H 1.08996 * 109.47400 * 271.82213 * 26 25 23 46 46 H 1.09006 * 109.47142 * 31.82343 * 26 25 23 47 47 H 1.08999 * 109.47277 * 151.81999 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.9955 -0.7661 1.1375 5 6 1.6314 -2.2427 0.9702 6 6 2.1792 -3.0404 2.1553 7 7 1.8301 -4.4542 1.9954 8 6 0.5731 -4.9653 2.5477 9 6 0.8014 -5.4416 3.9591 10 1 1.7845 -5.3703 4.4007 11 6 -0.2449 -5.9674 4.6870 12 7 -0.0454 -6.3835 5.9186 13 14 -1.9452 -6.0900 3.9235 14 1 -2.0878 -7.4008 3.2404 15 1 -2.9750 -5.9713 4.9868 16 1 -2.1247 -4.9953 2.9362 17 6 2.6652 -5.2847 1.3402 18 8 3.7114 -4.8595 0.8809 19 6 2.3310 -6.6397 1.1875 20 6 3.0845 -7.4415 0.3807 21 16 3.3166 -9.1894 0.5616 22 6 4.4055 -9.3395 -0.8939 23 6 4.4974 -7.9233 -1.4130 24 8 5.1509 -7.6205 -2.3885 25 7 3.8041 -7.0427 -0.7116 26 6 3.8070 -5.6320 -1.1066 27 1 -0.3633 0.4513 0.9233 28 1 -0.3633 0.5741 -0.8525 29 1 -0.3634 -1.0251 -0.0709 30 1 3.0828 1.3431 -0.0709 31 1 1.5899 1.9163 -0.8525 32 1 1.7045 1.8723 0.9233 33 1 1.5611 -0.3873 2.0627 34 1 3.0797 -0.6613 1.1755 35 1 2.0657 -2.6214 0.0450 36 1 0.5471 -2.3474 0.9322 37 1 1.7446 -2.6617 3.0803 38 1 3.2634 -2.9356 2.1936 39 1 -0.1731 -4.1707 2.5486 40 1 0.2189 -5.7957 1.9369 41 1 -0.7816 -6.7530 6.4308 42 1 1.4746 -7.0462 1.7050 43 1 3.9617 -9.9950 -1.6432 44 1 5.3890 -9.7043 -0.5974 45 1 4.6449 -5.1230 -0.6303 46 1 3.9051 -5.5582 -2.1897 47 1 2.8730 -5.1652 -0.7938 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000874192232.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:36 Heat of formation + Delta-G solvation = 8.290412 kcal Electronic energy + Delta-G solvation = -28398.575421 eV Core-core repulsion = 24517.466527 eV Total energy + Delta-G solvation = -3881.108894 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.20689 -39.52174 -37.74164 -36.75337 -35.25680 -32.97602 -32.08861 -31.25614 -30.70933 -28.08613 -27.65303 -26.87431 -26.11508 -23.89171 -22.68403 -22.09813 -20.78936 -20.35599 -18.32556 -18.13081 -17.04972 -16.98883 -16.63112 -16.50926 -15.73340 -15.50622 -15.26105 -15.03419 -14.58485 -14.42836 -14.33836 -14.00338 -13.85359 -13.50151 -13.13833 -13.03585 -12.63160 -12.53522 -12.37797 -12.25037 -12.06671 -11.83947 -11.74902 -11.47426 -11.39544 -11.32383 -11.20447 -11.06251 -10.82978 -10.67382 -10.34409 -10.29973 -10.20655 -9.63151 -9.00805 -8.81037 -8.72676 -8.41518 -7.84382 -7.42892 -6.23143 -4.24801 0.74800 1.10111 1.55531 2.36832 2.70566 3.15208 3.22788 3.24953 3.74976 3.75857 3.90661 4.08643 4.24251 4.66422 4.93892 5.01416 5.07143 5.08033 5.19208 5.29246 5.33318 5.46748 5.48472 5.57229 5.60850 5.64274 5.73548 5.75455 5.77928 5.91396 5.93770 6.01395 6.09566 6.23394 6.27791 6.39607 6.48485 6.53984 6.65805 6.95434 6.96938 6.99209 7.34266 7.42165 7.48498 8.09790 8.38462 8.81561 8.90511 9.35848 10.89543 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.006941 B = 0.004719 C = 0.003016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4033.011991 B = 5931.902620 C = 9281.481950 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.548 5.548 3 C 0.025 3.975 4 C 0.058 3.942 5 C -0.128 4.128 6 C 0.124 3.876 7 N -0.582 5.582 8 C 0.208 3.792 9 C -0.540 4.540 10 H 0.079 0.921 11 C 0.077 3.923 12 N -0.889 5.889 13 Si 0.868 3.132 14 H -0.272 1.272 15 H -0.283 1.283 16 H -0.264 1.264 17 C 0.554 3.446 18 O -0.575 6.575 19 C -0.224 4.224 20 C 0.180 3.820 21 S -0.065 6.065 22 C -0.149 4.149 23 C 0.518 3.482 24 O -0.496 6.496 25 N -0.530 5.530 26 C 0.093 3.907 27 H 0.025 0.975 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.023 0.977 33 H 0.035 0.965 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.062 0.938 37 H 0.077 0.923 38 H 0.076 0.924 39 H 0.033 0.967 40 H 0.030 0.970 41 H 0.266 0.734 42 H 0.166 0.834 43 H 0.141 0.859 44 H 0.146 0.854 45 H 0.104 0.896 46 H 0.055 0.945 47 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.768 3.171 -12.389 13.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.272 5.272 3 C -0.123 4.123 4 C -0.070 4.070 5 C -0.167 4.167 6 C -0.001 4.001 7 N -0.310 5.310 8 C 0.087 3.913 9 C -0.578 4.578 10 H 0.097 0.903 11 C -0.127 4.127 12 N -0.527 5.527 13 Si 0.694 3.306 14 H -0.197 1.197 15 H -0.209 1.209 16 H -0.189 1.189 17 C 0.347 3.653 18 O -0.462 6.462 19 C -0.260 4.260 20 C -0.034 4.034 21 S 0.176 5.824 22 C -0.300 4.300 23 C 0.305 3.695 24 O -0.371 6.371 25 N -0.251 5.251 26 C -0.049 4.049 27 H 0.044 0.956 28 H 0.082 0.918 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.042 0.958 33 H 0.054 0.946 34 H 0.094 0.906 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.051 0.949 40 H 0.048 0.952 41 H 0.076 0.924 42 H 0.183 0.817 43 H 0.159 0.841 44 H 0.163 0.837 45 H 0.122 0.878 46 H 0.074 0.926 47 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 3.363 2.270 -12.682 13.316 hybrid contribution -1.105 1.073 0.003 1.540 sum 2.258 3.343 -12.680 13.306 Atomic orbital electron populations 1.22438 0.87508 1.02636 1.00146 1.61973 1.08016 1.13491 1.43740 1.22366 1.00767 0.89002 1.00209 1.22078 1.00190 0.93810 0.90928 1.21961 1.01342 0.93414 1.00015 1.21203 1.00891 0.80630 0.97355 1.47721 1.21726 1.08077 1.53510 1.19840 0.81613 0.94866 0.94979 1.21388 0.98373 1.41758 0.96314 0.90262 1.24873 0.98574 0.94588 0.94639 1.69892 1.32447 1.40947 1.09376 0.86976 0.84706 0.79321 0.79549 1.19731 1.20901 1.18900 1.16276 0.84417 0.85535 0.79027 1.90857 1.25764 1.79331 1.50227 1.21228 1.03161 0.95065 1.06574 1.22181 0.93482 0.95538 0.92181 1.87105 1.59043 1.02664 1.33601 1.24426 1.05969 0.98896 1.00686 1.19730 0.79083 0.86937 0.83793 1.90790 1.39191 1.81767 1.25363 1.44900 1.44421 1.12118 1.23616 1.22636 1.06424 0.77388 0.98436 0.95645 0.91764 0.90874 0.91391 0.91637 0.95799 0.94627 0.90632 0.91052 0.91940 0.90448 0.90546 0.94861 0.95200 0.92361 0.81700 0.84060 0.83666 0.87790 0.92636 0.89580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.32 60.06 0.56 0.79 16 2 N -0.55 -6.55 5.02 -251.27 -1.26 -7.81 16 3 C 0.02 0.24 9.57 60.06 0.57 0.82 16 4 C 0.06 0.73 4.96 -3.82 -0.02 0.71 16 5 C -0.13 -1.83 5.46 -26.73 -0.15 -1.98 16 6 C 0.12 2.06 5.41 -4.04 -0.02 2.04 16 7 N -0.58 -11.13 2.46 -178.88 -0.44 -11.57 16 8 C 0.21 4.37 3.86 -5.19 -0.02 4.35 16 9 C -0.54 -13.74 9.91 -34.44 -0.34 -14.08 16 10 H 0.08 2.29 8.06 -52.49 -0.42 1.86 16 11 C 0.08 2.02 5.47 -17.82 -0.10 1.92 16 12 N -0.89 -25.32 13.96 55.43 0.77 -24.55 16 13 Si 0.87 19.20 27.47 -169.99 -4.67 14.53 16 14 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 15 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 16 H -0.26 -5.51 6.54 56.52 0.37 -5.14 16 17 C 0.55 10.56 6.02 -15.45 -0.09 10.47 16 18 O -0.58 -11.17 10.69 5.00 0.05 -11.11 16 19 C -0.22 -4.01 8.75 -39.42 -0.34 -4.35 16 20 C 0.18 2.85 6.78 -16.01 -0.11 2.74 16 21 S -0.06 -0.84 23.35 -107.50 -2.51 -3.35 16 22 C -0.15 -1.50 7.36 36.21 0.27 -1.23 16 23 C 0.52 7.32 7.79 -11.91 -0.09 7.22 16 24 O -0.50 -8.16 16.96 5.58 0.09 -8.07 16 25 N -0.53 -8.15 2.93 -122.27 -0.36 -8.51 16 26 C 0.09 1.46 8.16 59.85 0.49 1.95 16 27 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.06 0.61 8.12 -51.93 -0.42 0.18 16 29 H 0.07 0.83 6.47 -51.93 -0.34 0.50 16 30 H 0.07 0.62 8.12 -51.93 -0.42 0.20 16 31 H 0.06 0.56 8.12 -51.92 -0.42 0.14 16 32 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.04 0.44 8.12 -51.93 -0.42 0.02 16 34 H 0.08 0.92 8.06 -51.94 -0.42 0.50 16 35 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 36 H 0.06 0.91 6.55 -51.93 -0.34 0.57 16 37 H 0.08 1.31 8.07 -51.93 -0.42 0.90 16 38 H 0.08 1.30 7.42 -51.93 -0.39 0.91 16 39 H 0.03 0.69 7.13 -51.93 -0.37 0.32 16 40 H 0.03 0.61 5.64 -51.93 -0.29 0.32 16 41 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 42 H 0.17 3.06 6.20 -52.48 -0.33 2.73 16 43 H 0.14 1.06 8.14 -51.93 -0.42 0.64 16 44 H 0.15 1.16 8.14 -51.93 -0.42 0.74 16 45 H 0.10 1.78 6.29 -51.99 -0.33 1.45 16 46 H 0.06 0.81 7.54 -51.93 -0.39 0.42 16 47 H 0.09 1.39 5.49 -51.93 -0.29 1.11 16 LS Contribution 386.82 15.07 5.83 5.83 Total: -1.00 -30.06 386.82 -9.16 -39.22 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: -7.28 Total: 4.03 kcal Atomic # 6 Polarization: 10.75 SS G_CDS: 0.61 Total: 11.36 kcal Atomic # 7 Polarization: -51.16 SS G_CDS: -1.29 Total: -52.44 kcal Atomic # 8 Polarization: -19.33 SS G_CDS: 0.15 Total: -19.18 kcal Atomic # 14 Polarization: 19.20 SS G_CDS: -4.67 Total: 14.53 kcal Atomic # 16 Polarization: -0.84 SS G_CDS: -2.51 Total: -3.35 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -30.06 -9.16 -39.22 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874192232.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.510 kcal (2) G-P(sol) polarization free energy of solvation -30.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.219 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds