Wall clock time and date at job start Sat Apr 11 2020 06:21:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46897 * 110.99928 * 2 1 4 4 C 1.46897 * 111.00042 * 123.95086 * 2 1 3 5 5 C 1.52997 * 109.47254 * 169.99941 * 4 2 1 6 6 C 1.53003 * 109.47243 * 180.02562 * 5 4 2 7 7 N 1.46500 * 109.47162 * 180.02562 * 6 5 4 8 8 C 1.46501 * 120.00152 * 269.99827 * 7 6 5 9 9 C 1.50699 * 109.46968 * 269.99912 * 8 7 6 10 10 H 1.07996 * 120.00283 * 0.02562 * 9 8 7 11 11 C 1.37880 * 119.99707 * 179.97438 * 9 8 7 12 12 N 1.31515 * 120.00253 * 359.97438 * 11 9 8 13 13 Si 1.86799 * 119.99892 * 180.02562 * 11 9 8 14 14 H 1.48504 * 109.47098 * 59.99666 * 13 11 9 15 15 H 1.48501 * 109.47359 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.47137 * 300.00041 * 13 11 9 17 17 C 1.34782 * 119.99983 * 89.99555 * 7 6 5 18 18 O 1.21901 * 120.00009 * 0.02562 * 17 7 6 19 19 C 1.40399 * 119.99979 * 180.02562 * 17 7 6 20 20 C 1.36439 * 119.99935 * 180.02562 * 19 17 7 21 21 S 1.77254 * 126.26790 * 359.97438 * 20 19 17 22 22 C 1.82377 * 94.46953 * 180.02562 * 21 20 19 23 23 C 1.51126 * 103.49507 * 0.02562 * 22 21 20 24 24 O 1.21248 * 122.89581 * 180.02562 * 23 22 21 25 25 N 1.32211 * 114.20075 * 359.97438 * 23 22 21 26 26 C 1.46503 * 119.81196 * 180.02562 * 25 23 22 27 27 H 1.08995 * 109.47255 * 296.04997 * 1 2 3 28 28 H 1.09003 * 109.47292 * 56.04857 * 1 2 3 29 29 H 1.09004 * 109.46967 * 176.04618 * 1 2 3 30 30 H 1.09003 * 109.47291 * 183.95550 * 3 2 1 31 31 H 1.09005 * 109.47154 * 303.95219 * 3 2 1 32 32 H 1.08993 * 109.47387 * 63.95266 * 3 2 1 33 33 H 1.09000 * 109.46999 * 50.00294 * 4 2 1 34 34 H 1.09001 * 109.47369 * 290.00066 * 4 2 1 35 35 H 1.08996 * 109.47275 * 60.00041 * 5 4 2 36 36 H 1.09001 * 109.47035 * 300.00330 * 5 4 2 37 37 H 1.09000 * 109.47299 * 60.00177 * 6 5 4 38 38 H 1.08997 * 109.46641 * 299.99776 * 6 5 4 39 39 H 1.08999 * 109.46869 * 30.00062 * 8 7 6 40 40 H 1.09004 * 109.47180 * 150.00154 * 8 7 6 41 41 H 0.96993 * 120.00043 * 180.02562 * 12 11 9 42 42 H 1.08003 * 119.99908 * 0.02562 * 19 17 7 43 43 H 1.08991 * 110.62022 * 241.50066 * 22 21 20 44 44 H 1.08998 * 110.61626 * 118.50219 * 22 21 20 45 45 H 1.09001 * 109.47284 * 359.97020 * 26 25 23 46 46 H 1.08994 * 109.47240 * 119.97638 * 26 25 23 47 47 H 1.09001 * 109.46871 * 239.97395 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 3.5044 -0.9553 0.9704 6 6 4.0526 -1.7536 2.1549 7 7 5.4976 -1.9344 1.9951 8 6 6.0149 -3.1050 1.2822 9 6 6.2368 -4.2306 2.2594 10 1 6.0143 -4.0884 3.3066 11 6 6.7229 -5.4424 1.8162 12 7 6.9925 -5.6161 0.5408 13 14 6.9973 -6.8379 3.0273 14 1 5.7105 -7.1853 3.6821 15 1 7.5207 -8.0249 2.3046 16 1 7.9783 -6.4131 4.0580 17 6 6.3511 -1.0237 2.5039 18 8 5.9206 -0.0498 3.0974 19 6 7.7359 -1.1967 2.3502 20 6 8.5998 -0.2751 2.8657 21 16 8.1586 1.1942 3.7537 22 6 9.8833 1.7299 4.0079 23 6 10.6923 0.6457 3.3341 24 8 11.9042 0.6559 3.2958 25 7 9.9646 -0.3153 2.7911 26 6 10.6242 -1.4295 2.1057 27 1 -0.3633 0.4513 0.9232 28 1 -0.3634 0.5739 -0.8525 29 1 -0.3633 -1.0253 -0.0709 30 1 3.0828 1.3433 -0.0709 31 1 1.5898 1.9163 -0.8525 32 1 1.7044 1.8723 0.9232 33 1 1.5090 -1.7406 1.1756 34 1 1.7975 -0.2247 2.0628 35 1 3.9909 0.0193 0.9323 36 1 3.7023 -1.4965 0.0452 37 1 3.5661 -2.7283 2.1926 38 1 3.8547 -1.2126 3.0803 39 1 5.2950 -3.4172 0.5257 40 1 6.9594 -2.8497 0.8016 41 1 7.3341 -6.4687 0.2290 42 1 8.1172 -2.0593 1.8240 43 1 10.1172 1.7790 5.0713 44 1 10.0603 2.6934 3.5301 45 1 11.7049 -1.2925 2.1463 46 1 10.3580 -2.3661 2.5955 47 1 10.3006 -1.4588 1.0653 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000874192233.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:39 Heat of formation + Delta-G solvation = -26.387822 kcal Electronic energy + Delta-G solvation = -27945.695907 eV Core-core repulsion = 24063.083252 eV Total energy + Delta-G solvation = -3882.612655 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.96006 -39.39496 -37.61539 -36.83333 -35.22030 -33.01619 -31.90670 -31.19202 -30.65424 -27.60974 -27.42156 -26.99692 -25.97088 -23.92536 -23.01305 -22.06878 -20.62829 -19.88300 -18.81962 -17.73347 -16.78113 -16.66684 -16.55847 -16.13009 -15.76830 -15.40122 -15.16082 -14.84014 -14.52916 -14.36625 -14.19848 -14.11496 -13.89797 -13.65769 -12.99423 -12.83724 -12.47276 -12.38864 -12.34715 -12.17050 -11.99522 -11.77841 -11.63623 -11.45304 -11.32933 -11.23037 -11.18373 -11.02926 -10.90439 -10.72585 -10.33110 -10.25872 -10.08600 -9.78118 -9.04681 -8.75470 -8.58143 -8.33591 -7.91211 -7.33682 -6.21490 -4.29202 1.03770 1.32868 1.86727 2.38953 2.65904 3.21527 3.27118 3.29896 3.79651 3.91458 4.00274 4.21123 4.33175 4.83750 5.05962 5.09409 5.11534 5.15533 5.23081 5.29741 5.31061 5.38843 5.40238 5.55716 5.65073 5.71828 5.73249 5.74853 5.79646 5.86467 5.98665 6.02393 6.08392 6.19346 6.24527 6.51165 6.63530 6.76147 6.89975 7.05129 7.07761 7.15703 7.48714 7.53205 7.73506 8.01981 8.30137 8.75461 8.96319 9.38823 10.84549 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.006787 B = 0.004422 C = 0.002861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4124.764520 B = 6330.899024 C = 9785.774978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.548 5.548 3 C 0.022 3.978 4 C 0.059 3.941 5 C -0.128 4.128 6 C 0.124 3.876 7 N -0.585 5.585 8 C 0.237 3.763 9 C -0.537 4.537 10 H 0.061 0.939 11 C 0.066 3.934 12 N -0.891 5.891 13 Si 0.895 3.105 14 H -0.276 1.276 15 H -0.286 1.286 16 H -0.276 1.276 17 C 0.556 3.444 18 O -0.568 6.568 19 C -0.206 4.206 20 C 0.149 3.851 21 S 0.014 5.986 22 C -0.193 4.193 23 C 0.524 3.476 24 O -0.504 6.504 25 N -0.542 5.542 26 C 0.061 3.939 27 H 0.022 0.978 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.024 0.976 33 H 0.075 0.925 34 H 0.034 0.966 35 H 0.063 0.937 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.039 0.961 40 H 0.038 0.962 41 H 0.266 0.734 42 H 0.161 0.839 43 H 0.138 0.862 44 H 0.138 0.862 45 H 0.094 0.906 46 H 0.084 0.916 47 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.449 11.783 1.243 12.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.272 5.272 3 C -0.126 4.126 4 C -0.069 4.069 5 C -0.167 4.167 6 C 0.000 4.000 7 N -0.313 5.313 8 C 0.118 3.882 9 C -0.576 4.576 10 H 0.079 0.921 11 C -0.137 4.137 12 N -0.529 5.529 13 Si 0.722 3.278 14 H -0.201 1.201 15 H -0.212 1.212 16 H -0.201 1.201 17 C 0.348 3.652 18 O -0.454 6.454 19 C -0.243 4.243 20 C -0.062 4.062 21 S 0.254 5.746 22 C -0.344 4.344 23 C 0.312 3.688 24 O -0.379 6.379 25 N -0.264 5.264 26 C -0.082 4.082 27 H 0.041 0.959 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.042 0.958 33 H 0.093 0.907 34 H 0.052 0.948 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.090 0.910 39 H 0.057 0.943 40 H 0.056 0.944 41 H 0.076 0.924 42 H 0.178 0.822 43 H 0.156 0.844 44 H 0.156 0.844 45 H 0.113 0.887 46 H 0.103 0.897 47 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -2.771 12.517 1.350 12.891 hybrid contribution 1.057 -1.386 0.817 1.925 sum -1.714 11.132 2.167 11.470 Atomic orbital electron populations 1.22366 0.87703 1.02153 1.00110 1.61971 1.07456 1.13982 1.43771 1.22423 1.01509 0.88681 0.99972 1.22080 0.96077 0.97974 0.90806 1.21945 0.93639 1.01178 0.99973 1.21185 0.81106 1.00113 0.97584 1.47960 1.05229 1.23746 1.54392 1.19471 0.95363 0.81256 0.92149 1.21477 1.44415 0.96823 0.94883 0.92100 1.24919 0.95101 0.98439 0.95220 1.69907 1.44071 1.25353 1.13587 0.86605 0.78778 0.81332 0.81058 1.20110 1.21158 1.20146 1.16150 0.86492 0.82884 0.79656 1.90682 1.78879 1.30904 1.44894 1.21190 0.93331 1.01017 1.08739 1.22269 0.83870 0.99528 1.00577 1.87808 1.01096 1.19570 1.66126 1.24665 1.00119 1.02523 1.07060 1.19788 0.88083 0.82468 0.78503 1.90769 1.11970 1.76655 1.58547 1.44532 1.05088 1.24461 1.52353 1.22167 0.99457 0.88428 0.98193 0.95919 0.91659 0.91367 0.90815 0.91828 0.95778 0.90658 0.94815 0.91785 0.90922 0.90410 0.91048 0.94334 0.94426 0.92440 0.82225 0.84415 0.84420 0.88713 0.89692 0.90032 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.26 9.57 60.06 0.57 0.83 16 2 N -0.55 -6.99 5.02 -251.27 -1.26 -8.25 16 3 C 0.02 0.26 9.32 60.06 0.56 0.82 16 4 C 0.06 0.78 4.96 -3.83 -0.02 0.77 16 5 C -0.13 -1.99 5.46 -26.73 -0.15 -2.14 16 6 C 0.12 2.18 5.41 -4.04 -0.02 2.16 16 7 N -0.58 -11.71 2.46 -178.87 -0.44 -12.15 16 8 C 0.24 5.33 4.84 -5.19 -0.03 5.31 16 9 C -0.54 -13.34 9.39 -34.44 -0.32 -13.67 16 10 H 0.06 1.56 7.81 -52.49 -0.41 1.15 16 11 C 0.07 1.68 5.46 -17.82 -0.10 1.58 16 12 N -0.89 -23.54 13.29 55.43 0.74 -22.80 16 13 Si 0.89 19.96 29.54 -169.99 -5.02 14.94 16 14 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 15 H -0.29 -6.36 7.11 56.52 0.40 -5.95 16 16 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 17 C 0.56 11.11 7.41 -15.44 -0.11 10.99 16 18 O -0.57 -11.77 13.68 5.01 0.07 -11.70 16 19 C -0.21 -3.77 8.56 -39.42 -0.34 -4.11 16 20 C 0.15 2.43 7.00 -16.01 -0.11 2.32 16 21 S 0.01 0.21 20.64 -107.50 -2.22 -2.01 16 22 C -0.19 -2.16 7.36 36.21 0.27 -1.89 16 23 C 0.52 7.41 7.80 -11.91 -0.09 7.32 16 24 O -0.50 -8.17 16.68 5.59 0.09 -8.08 16 25 N -0.54 -7.96 2.95 -122.27 -0.36 -8.32 16 26 C 0.06 0.80 9.58 59.85 0.57 1.37 16 27 H 0.02 0.22 8.14 -51.93 -0.42 -0.20 16 28 H 0.06 0.59 8.12 -51.93 -0.42 0.17 16 29 H 0.07 0.66 8.12 -51.93 -0.42 0.24 16 30 H 0.07 0.92 6.47 -51.93 -0.34 0.59 16 31 H 0.06 0.64 8.12 -51.93 -0.42 0.22 16 32 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.07 0.96 8.06 -51.93 -0.42 0.54 16 34 H 0.03 0.44 8.12 -51.93 -0.42 0.02 16 35 H 0.06 1.05 6.55 -51.93 -0.34 0.71 16 36 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.08 1.36 8.07 -51.93 -0.42 0.94 16 38 H 0.07 1.26 7.42 -51.93 -0.39 0.88 16 39 H 0.04 0.92 8.07 -51.93 -0.42 0.50 16 40 H 0.04 0.87 6.08 -51.93 -0.32 0.55 16 41 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 42 H 0.16 2.99 5.41 -52.48 -0.28 2.71 16 43 H 0.14 1.27 8.14 -51.93 -0.42 0.84 16 44 H 0.14 1.23 8.14 -51.93 -0.42 0.81 16 45 H 0.09 1.17 6.99 -51.93 -0.36 0.81 16 46 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 47 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 396.41 15.07 5.97 5.97 Total: -1.00 -29.18 396.41 -9.21 -38.39 By element: Atomic # 1 Polarization: 9.81 SS G_CDS: -7.47 Total: 2.34 kcal Atomic # 6 Polarization: 10.99 SS G_CDS: 0.69 Total: 11.67 kcal Atomic # 7 Polarization: -50.20 SS G_CDS: -1.32 Total: -51.53 kcal Atomic # 8 Polarization: -19.94 SS G_CDS: 0.16 Total: -19.78 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -5.02 Total: 14.94 kcal Atomic # 16 Polarization: 0.21 SS G_CDS: -2.22 Total: -2.01 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -29.18 -9.21 -38.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874192233.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.003 kcal (2) G-P(sol) polarization free energy of solvation -29.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.391 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds