Wall clock time and date at job start Sat Apr 11 2020 06:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46978 * 111.00704 * 2 1 4 4 C 1.53372 * 109.73420 * 165.19579 * 3 2 1 5 5 N 1.46658 * 108.24622 * 49.84554 * 4 3 2 6 6 N 1.39394 * 128.33304 * 163.44180 * 5 4 3 7 7 C 1.31484 * 108.04989 * 180.20082 * 6 5 4 8 8 N 1.40178 * 125.93191 * 179.97438 * 7 6 5 9 9 C 1.34773 * 119.99394 * 180.02562 * 8 7 6 10 10 O 1.21593 * 120.00512 * 0.02562 * 9 8 7 11 11 N 1.34785 * 119.99809 * 179.97438 * 9 8 7 12 12 C 1.39230 * 119.99653 * 184.03051 * 11 9 8 13 13 C 1.39478 * 119.83613 * 324.49516 * 12 11 9 14 14 C 1.36374 * 120.16483 * 179.71981 * 13 12 11 15 15 C 1.40862 * 119.83167 * 0.55475 * 14 13 12 16 16 C 1.41158 * 120.16731 * 179.70042 * 15 14 13 17 17 H 1.07996 * 119.99801 * 214.80327 * 16 15 14 18 18 C 1.39896 * 119.99661 * 34.80186 * 16 15 14 19 19 N 1.30873 * 120.00031 * 355.55740 * 18 16 15 20 20 Si 1.86799 * 119.99664 * 175.56148 * 18 16 15 21 21 H 1.48503 * 109.47150 * 59.99660 * 20 18 16 22 22 H 1.48493 * 109.47150 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.46957 * 299.99800 * 20 18 16 24 24 C 1.40872 * 119.67100 * 359.71842 * 15 14 13 25 25 C 1.36368 * 119.83010 * 0.02562 * 24 15 14 26 26 C 1.40642 * 108.12384 * 0.22602 * 7 6 5 27 27 C 1.34501 * 107.75530 * 359.52752 * 26 7 6 28 28 C 1.47365 * 110.99965 * 235.88411 * 2 1 3 29 29 H 1.08996 * 109.47369 * 188.06695 * 1 2 3 30 30 H 1.09001 * 109.46751 * 308.07187 * 1 2 3 31 31 H 1.08997 * 109.47033 * 68.06654 * 1 2 3 32 32 H 1.09002 * 109.42743 * 285.27033 * 3 2 1 33 33 H 1.09006 * 109.42203 * 45.11110 * 3 2 1 34 34 H 1.09000 * 109.69179 * 290.16322 * 4 3 2 35 35 H 1.09005 * 109.72556 * 169.54207 * 4 3 2 36 36 H 0.96994 * 120.00553 * 0.02562 * 8 7 6 37 37 H 0.96993 * 120.00019 * 4.30654 * 11 9 8 38 38 H 1.08005 * 119.91797 * 0.02562 * 13 12 11 39 39 H 1.08005 * 120.08256 * 180.25702 * 14 13 12 40 40 H 0.97001 * 119.99833 * 180.02562 * 19 18 16 41 41 H 1.08007 * 120.08371 * 179.97438 * 24 15 14 42 42 H 1.07998 * 119.91841 * 179.97438 * 25 24 15 43 43 H 1.08001 * 126.12116 * 179.67859 * 26 7 6 44 44 H 1.08998 * 109.74595 * 54.36305 * 28 2 1 45 45 H 1.09001 * 109.78371 * 293.66609 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9959 1.3721 0.0000 4 6 3.4845 1.3552 0.3689 5 7 4.1547 0.3583 -0.4724 6 7 5.5188 0.2121 -0.7196 7 6 5.6782 -0.8076 -1.5342 8 7 6.9012 -1.2836 -2.0267 9 6 6.9257 -2.3428 -2.8598 10 8 5.8870 -2.8851 -3.1845 11 7 8.1016 -2.8002 -3.3338 12 6 8.1218 -3.8401 -4.2594 13 6 7.1781 -4.8635 -4.1740 14 6 7.1881 -5.8824 -5.0804 15 6 8.1621 -5.9056 -6.0978 16 6 8.1830 -6.9601 -7.0359 17 1 9.1250 -7.3218 -7.4208 18 6 6.9835 -7.5366 -7.4670 19 7 5.8482 -7.1586 -6.9369 20 14 7.0023 -8.8460 -8.7991 21 1 7.8136 -10.0036 -8.3439 22 1 5.6131 -9.2930 -9.0734 23 1 7.5954 -8.2826 -10.0385 24 6 9.1156 -4.8714 -6.1741 25 6 9.0897 -3.8564 -5.2637 26 6 4.4080 -1.3340 -1.8300 27 6 3.4963 -0.6057 -1.1612 28 6 1.9971 -0.7716 -1.1390 29 1 -0.3634 -1.0174 0.1442 30 1 -0.3633 0.6337 0.8090 31 1 -0.3633 0.3839 -0.9533 32 1 1.8731 1.8076 -0.9917 33 1 1.4485 1.9706 0.7283 34 1 3.5996 1.0872 1.4191 35 1 3.9189 2.3388 0.1902 36 1 7.7298 -0.8508 -1.7681 37 1 8.9339 -2.4076 -3.0272 38 1 6.4343 -4.8465 -3.3910 39 1 6.4541 -6.6720 -5.0155 40 1 5.0165 -7.5586 -7.2355 41 1 9.8657 -4.8827 -6.9511 42 1 9.8203 -3.0630 -5.3206 43 1 4.2018 -2.1743 -2.4764 44 1 1.5710 -0.3943 -2.0686 45 1 1.7449 -1.8253 -1.0194 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000878086464.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:44 Heat of formation + Delta-G solvation = 103.461864 kcal Electronic energy + Delta-G solvation = -28336.814060 eV Core-core repulsion = 24356.680910 eV Total energy + Delta-G solvation = -3980.133150 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.61080 -39.98668 -38.10251 -37.34521 -34.81069 -34.34913 -33.17650 -32.66513 -31.13599 -29.47110 -29.05499 -28.28351 -27.09944 -25.12078 -24.41428 -22.65548 -22.20814 -21.27289 -20.48082 -19.99132 -19.35099 -17.72387 -17.26331 -17.17092 -16.75322 -16.11268 -15.69968 -15.27621 -15.23581 -15.08155 -14.94473 -14.47969 -14.19388 -13.90892 -13.69525 -13.12902 -13.05118 -12.85724 -12.69611 -12.64983 -12.18406 -12.07387 -11.87235 -11.83922 -11.72727 -11.39773 -11.14099 -10.95599 -10.63097 -10.56431 -10.43655 -9.93365 -9.87971 -9.55273 -9.05776 -9.03475 -8.76697 -8.57000 -8.06265 -7.48463 -6.85614 -6.55884 -4.29879 1.83764 2.06937 2.63723 2.88672 3.02941 3.09699 3.12660 3.14321 3.22373 3.33855 3.77321 4.01608 4.17011 4.25875 4.49833 4.56949 4.70280 4.76032 4.95898 4.99995 5.07636 5.11453 5.27170 5.35566 5.42169 5.44668 5.67718 5.76925 5.86206 6.15710 6.33531 6.37212 6.39291 6.42689 6.72326 6.86250 6.96139 7.06205 7.09131 7.16943 7.27883 7.35491 7.67601 7.72842 7.91861 8.04251 8.12437 8.32128 8.42070 8.70850 8.89854 8.96918 9.06610 10.34937 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016889 B = 0.002215 C = 0.001979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.452875 B =12636.818766 C =14147.120668 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.546 5.546 3 C 0.037 3.963 4 C 0.148 3.852 5 N -0.368 5.368 6 N -0.328 5.328 7 C 0.326 3.674 8 N -0.651 5.651 9 C 0.702 3.298 10 O -0.549 6.549 11 N -0.658 5.658 12 C 0.020 3.980 13 C -0.092 4.092 14 C -0.143 4.143 15 C 0.099 3.901 16 C -0.463 4.463 17 H 0.075 0.925 18 C 0.069 3.931 19 N -0.807 5.807 20 Si 0.915 3.085 21 H -0.266 1.266 22 H -0.280 1.280 23 H -0.267 1.267 24 C -0.203 4.203 25 C -0.113 4.113 26 C -0.248 4.248 27 C 0.084 3.916 28 C 0.119 3.881 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.031 0.969 32 H 0.049 0.951 33 H 0.101 0.899 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.407 0.593 37 H 0.394 0.606 38 H 0.110 0.890 39 H 0.131 0.869 40 H 0.278 0.722 41 H 0.097 0.903 42 H 0.091 0.909 43 H 0.177 0.823 44 H 0.064 0.936 45 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.879 15.576 13.328 21.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.271 5.271 3 C -0.092 4.092 4 C 0.026 3.974 5 N -0.154 5.154 6 N -0.158 5.158 7 C 0.069 3.931 8 N -0.303 5.303 9 C 0.402 3.598 10 O -0.423 6.423 11 N -0.305 5.305 12 C -0.072 4.072 13 C -0.112 4.112 14 C -0.163 4.163 15 C 0.097 3.903 16 C -0.494 4.494 17 H 0.093 0.907 18 C -0.146 4.146 19 N -0.434 5.434 20 Si 0.740 3.260 21 H -0.191 1.191 22 H -0.205 1.205 23 H -0.192 1.192 24 C -0.223 4.223 25 C -0.133 4.133 26 C -0.279 4.279 27 C -0.043 4.043 28 C -0.010 4.010 29 H 0.095 0.905 30 H 0.091 0.909 31 H 0.050 0.950 32 H 0.067 0.933 33 H 0.119 0.881 34 H 0.105 0.895 35 H 0.111 0.889 36 H 0.242 0.758 37 H 0.227 0.773 38 H 0.128 0.872 39 H 0.149 0.851 40 H 0.089 0.911 41 H 0.115 0.885 42 H 0.109 0.891 43 H 0.195 0.805 44 H 0.082 0.918 45 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -8.375 15.774 14.135 22.777 hybrid contribution 0.218 -0.147 -1.514 1.536 sum -8.157 15.627 12.621 21.681 Atomic orbital electron populations 1.22407 0.85751 1.03299 1.00810 1.62145 1.08853 1.12961 1.43105 1.22524 0.94095 0.90580 1.01987 1.21787 0.90154 0.91021 0.94461 1.47982 1.02739 1.25708 1.38951 1.77162 0.93689 1.21224 1.23770 1.18839 0.86500 0.93238 0.94480 1.41720 1.06292 1.32797 1.49504 1.15782 0.85173 0.79679 0.79181 1.90869 1.31216 1.58960 1.61246 1.42011 1.05825 1.37343 1.45273 1.17052 1.03949 0.90910 0.95293 1.20670 0.97645 0.92969 0.99942 1.21299 1.01813 0.99207 0.93987 1.17731 0.90528 0.91324 0.90727 1.19437 0.93348 1.15040 1.21577 0.90712 1.25882 0.95180 0.96364 0.97205 1.69780 0.98833 1.37388 1.37419 0.86266 0.77928 0.80709 0.81104 1.19100 1.20458 1.19178 1.20672 1.04274 0.96429 1.00967 1.20047 0.99114 0.99133 0.95023 1.21382 0.88964 1.07410 1.10107 1.20880 0.94729 0.92214 0.96438 1.20951 0.87300 1.00587 0.92165 0.90523 0.90912 0.95015 0.93318 0.88078 0.89499 0.88942 0.75786 0.77293 0.87245 0.85130 0.91051 0.88519 0.89122 0.80547 0.91824 0.87364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.14 9.63 60.06 0.58 0.72 16 2 N -0.55 -4.53 4.92 -243.57 -1.20 -5.73 16 3 C 0.04 0.25 5.54 -3.59 -0.02 0.23 16 4 C 0.15 1.27 7.53 -3.76 -0.03 1.24 16 5 N -0.37 -4.88 4.06 -56.84 -0.23 -5.11 16 6 N -0.33 -5.07 12.65 31.53 0.40 -4.68 16 7 C 0.33 5.37 8.12 -154.06 -1.25 4.12 16 8 N -0.65 -9.87 5.45 -15.39 -0.08 -9.95 16 9 C 0.70 12.93 8.36 -86.91 -0.73 12.21 16 10 O -0.55 -12.15 10.91 5.28 0.06 -12.09 16 11 N -0.66 -11.54 5.31 -14.10 -0.07 -11.61 16 12 C 0.02 0.45 6.30 -83.57 -0.53 -0.08 16 13 C -0.09 -2.27 8.61 -39.79 -0.34 -2.62 16 14 C -0.14 -3.82 8.61 -39.26 -0.34 -4.16 16 15 C 0.10 2.66 5.55 -106.80 -0.59 2.07 16 16 C -0.46 -12.34 9.02 -37.85 -0.34 -12.68 16 17 H 0.07 1.89 7.85 -52.49 -0.41 1.48 16 18 C 0.07 1.77 5.42 -17.34 -0.09 1.68 16 19 N -0.81 -21.51 10.60 55.54 0.59 -20.92 16 20 Si 0.91 19.15 29.56 -169.99 -5.03 14.13 16 21 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 22 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 23 H -0.27 -5.54 7.11 56.52 0.40 -5.13 16 24 C -0.20 -4.88 9.74 -39.26 -0.38 -5.27 16 25 C -0.11 -2.44 9.90 -39.79 -0.39 -2.83 16 26 C -0.25 -4.13 9.56 -40.00 -0.38 -4.51 16 27 C 0.08 1.15 6.68 -82.20 -0.55 0.61 16 28 C 0.12 1.20 5.87 -4.65 -0.03 1.17 16 29 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.31 7.92 -51.93 -0.41 -0.10 16 31 H 0.03 0.17 8.11 -51.93 -0.42 -0.25 16 32 H 0.05 0.34 8.07 -51.93 -0.42 -0.08 16 33 H 0.10 0.41 7.86 -51.93 -0.41 0.01 16 34 H 0.09 0.70 8.14 -51.93 -0.42 0.28 16 35 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.41 4.74 8.84 -40.82 -0.36 4.37 16 37 H 0.39 5.23 8.83 -40.82 -0.36 4.87 16 38 H 0.11 2.72 6.24 -52.48 -0.33 2.39 16 39 H 0.13 3.65 6.13 -52.48 -0.32 3.33 16 40 H 0.28 6.84 8.30 -40.82 -0.34 6.50 16 41 H 0.10 2.16 8.06 -52.48 -0.42 1.74 16 42 H 0.09 1.65 8.06 -52.49 -0.42 1.23 16 43 H 0.18 3.28 5.92 -52.49 -0.31 2.97 16 44 H 0.06 0.59 8.11 -51.93 -0.42 0.16 16 45 H 0.11 1.04 8.14 -51.93 -0.42 0.61 16 LS Contribution 370.08 15.07 5.58 5.58 Total: -1.00 -33.02 370.08 -11.25 -44.27 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: -5.85 Total: 14.22 kcal Atomic # 6 Polarization: -2.68 SS G_CDS: -5.42 Total: -8.10 kcal Atomic # 7 Polarization: -57.40 SS G_CDS: -0.60 Total: -58.00 kcal Atomic # 8 Polarization: -12.15 SS G_CDS: 0.06 Total: -12.09 kcal Atomic # 14 Polarization: 19.15 SS G_CDS: -5.03 Total: 14.13 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -33.02 -11.25 -44.27 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000878086464.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.735 kcal (2) G-P(sol) polarization free energy of solvation -33.019 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds