Wall clock time and date at job start Sat Apr 11 2020 06:21:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46980 * 110.99976 * 2 1 4 4 C 1.53374 * 109.73357 * 165.19151 * 3 2 1 5 5 N 1.46660 * 108.23911 * 49.85016 * 4 3 2 6 6 N 1.39403 * 128.32914 * 163.44574 * 5 4 3 7 7 C 1.31475 * 108.05047 * 180.19828 * 6 5 4 8 8 N 1.40182 * 125.93615 * 179.97438 * 7 6 5 9 9 C 1.34779 * 119.99865 * 180.02562 * 8 7 6 10 10 O 1.21592 * 120.00082 * 359.97438 * 9 8 7 11 11 N 1.34781 * 119.99969 * 179.97438 * 9 8 7 12 12 C 1.39947 * 120.00074 * 174.81665 * 11 9 8 13 13 C 1.39290 * 119.94598 * 146.38172 * 12 11 9 14 14 C 1.38486 * 120.42691 * 180.02562 * 13 12 11 15 15 C 1.37685 * 120.32401 * 359.97438 * 14 13 12 16 16 C 1.40740 * 119.88383 * 0.02562 * 15 14 13 17 17 C 1.41411 * 120.21104 * 179.97438 * 16 15 14 18 18 H 1.07999 * 119.99739 * 151.79134 * 17 16 15 19 19 C 1.39929 * 119.99619 * 331.78801 * 17 16 15 20 20 N 1.30822 * 120.00257 * 348.98778 * 19 17 16 21 21 Si 1.86801 * 119.99646 * 168.99345 * 19 17 16 22 22 H 1.48498 * 109.47420 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47221 * 120.00193 * 21 19 17 24 24 H 1.48505 * 109.46814 * 239.99996 * 21 19 17 25 25 C 1.38243 * 119.94766 * 326.11116 * 12 11 9 26 26 C 1.40647 * 108.12556 * 0.18023 * 7 6 5 27 27 C 1.34492 * 107.74977 * 359.59630 * 26 7 6 28 28 C 1.47362 * 111.00377 * 235.88465 * 2 1 3 29 29 H 1.09005 * 109.47067 * 188.07078 * 1 2 3 30 30 H 1.09002 * 109.47559 * 308.06465 * 1 2 3 31 31 H 1.08994 * 109.47334 * 68.07586 * 1 2 3 32 32 H 1.09005 * 109.42657 * 285.26684 * 3 2 1 33 33 H 1.08997 * 109.42776 * 45.10932 * 3 2 1 34 34 H 1.09002 * 109.70134 * 290.16743 * 4 3 2 35 35 H 1.09002 * 109.71915 * 169.54263 * 4 3 2 36 36 H 0.96999 * 120.00566 * 0.28845 * 8 7 6 37 37 H 0.96998 * 119.99984 * 354.82739 * 11 9 8 38 38 H 1.07997 * 119.78331 * 0.02562 * 13 12 11 39 39 H 1.08004 * 119.83619 * 180.02562 * 14 13 12 40 40 H 1.07995 * 120.06190 * 179.97438 * 15 14 13 41 41 H 0.97001 * 120.00377 * 180.02562 * 20 19 17 42 42 H 1.08005 * 120.15657 * 359.97438 * 25 12 11 43 43 H 1.08001 * 126.12446 * 179.73879 * 26 7 6 44 44 H 1.08995 * 109.74730 * 54.35839 * 28 2 1 45 45 H 1.08998 * 109.78439 * 293.65864 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9957 1.3722 0.0000 4 6 3.4843 1.3555 0.3690 5 7 4.1546 0.3586 -0.4724 6 7 5.5187 0.2125 -0.7195 7 6 5.6783 -0.8070 -1.5341 8 7 6.9014 -1.2830 -2.0267 9 6 6.9261 -2.3421 -2.8598 10 8 5.8875 -2.8851 -3.1839 11 7 8.1020 -2.7994 -3.3338 12 6 8.1384 -3.9630 -4.1105 13 6 9.0737 -4.0859 -5.1354 14 6 9.1182 -5.2327 -5.9104 15 6 8.2380 -6.2650 -5.6756 16 6 7.2875 -6.1551 -4.6435 17 6 6.3798 -7.2109 -4.3966 18 1 5.9842 -7.3617 -3.4031 19 6 5.9941 -8.0601 -5.4398 20 7 6.2955 -7.7564 -6.6760 21 14 5.0486 -9.6274 -5.0670 22 1 4.8350 -9.7402 -3.6017 23 1 3.7346 -9.5890 -5.7577 24 1 5.8251 -10.7995 -5.5451 25 6 7.2499 -4.9910 -3.8557 26 6 4.4082 -1.3342 -1.8293 27 6 3.4964 -0.6054 -1.1611 28 6 1.9971 -0.7716 -1.1390 29 1 -0.3633 -1.0175 0.1443 30 1 -0.3634 0.6336 0.8091 31 1 -0.3634 0.3837 -0.9533 32 1 1.8729 1.8076 -0.9917 33 1 1.4483 1.9706 0.7282 34 1 3.5995 1.0874 1.4192 35 1 3.9185 2.3392 0.1903 36 1 7.7303 -0.8525 -1.7649 37 1 8.9230 -2.3221 -3.1365 38 1 9.7685 -3.2816 -5.3268 39 1 9.8476 -5.3180 -6.7024 40 1 8.2762 -7.1573 -6.2829 41 1 6.0278 -8.3449 -7.3992 42 1 6.5275 -4.8985 -3.0581 43 1 4.2022 -2.1752 -2.4748 44 1 1.5711 -0.3944 -2.0686 45 1 1.7451 -1.8253 -1.0194 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000879845533.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:47 Heat of formation + Delta-G solvation = 101.477318 kcal Electronic energy + Delta-G solvation = -28545.630404 eV Core-core repulsion = 24565.411197 eV Total energy + Delta-G solvation = -3980.219207 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.60682 -40.00681 -38.07915 -37.26919 -34.77462 -34.37487 -33.19913 -32.74754 -31.12757 -29.77534 -28.76060 -27.74351 -27.06480 -25.26401 -24.54122 -22.82610 -22.35130 -21.02779 -20.52722 -19.98204 -19.36176 -17.86711 -17.50191 -17.07823 -16.42358 -15.98043 -15.51738 -15.25035 -15.16971 -15.05536 -14.74872 -14.58880 -14.38156 -14.14449 -13.67487 -13.12741 -13.03346 -12.87926 -12.83558 -12.67151 -12.22161 -12.10379 -11.85361 -11.82900 -11.67969 -11.29748 -11.08209 -10.68995 -10.61266 -10.50389 -10.42863 -10.09389 -9.73724 -9.53459 -9.17123 -9.03044 -8.90272 -8.56005 -8.06524 -7.37764 -6.85478 -6.62164 -4.30050 1.84408 2.06034 2.65908 2.84588 2.96249 3.09645 3.13992 3.20156 3.24009 3.34941 3.78100 4.01945 4.18230 4.24857 4.49456 4.54374 4.71321 4.72535 4.97187 5.01563 5.08704 5.13029 5.29566 5.36559 5.43167 5.46526 5.72734 5.77835 5.87477 6.24049 6.34948 6.40778 6.41591 6.42169 6.67668 6.80770 6.97100 7.06994 7.09366 7.13651 7.25094 7.34110 7.64995 7.75516 7.91920 8.03168 8.14360 8.27591 8.39560 8.70955 8.86976 9.00295 9.03320 10.31276 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012279 B = 0.002645 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2279.814801 B =10582.838062 C =12570.979443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.546 5.546 3 C 0.037 3.963 4 C 0.148 3.852 5 N -0.368 5.368 6 N -0.327 5.327 7 C 0.325 3.675 8 N -0.650 5.650 9 C 0.705 3.295 10 O -0.538 6.538 11 N -0.673 5.673 12 C 0.165 3.835 13 C -0.258 4.258 14 C -0.094 4.094 15 C -0.168 4.168 16 C 0.119 3.881 17 C -0.456 4.456 18 H 0.077 0.923 19 C 0.073 3.927 20 N -0.801 5.801 21 Si 0.910 3.090 22 H -0.261 1.261 23 H -0.275 1.275 24 H -0.274 1.274 25 C -0.206 4.206 26 C -0.248 4.248 27 C 0.085 3.915 28 C 0.119 3.881 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.031 0.969 32 H 0.048 0.952 33 H 0.101 0.899 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.408 0.592 37 H 0.397 0.603 38 H 0.089 0.911 39 H 0.092 0.908 40 H 0.122 0.878 41 H 0.278 0.722 42 H 0.109 0.891 43 H 0.178 0.822 44 H 0.064 0.936 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.108 16.450 11.186 21.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.271 5.271 3 C -0.092 4.092 4 C 0.026 3.974 5 N -0.154 5.154 6 N -0.157 5.157 7 C 0.069 3.931 8 N -0.302 5.302 9 C 0.405 3.595 10 O -0.410 6.410 11 N -0.319 5.319 12 C 0.073 3.927 13 C -0.279 4.279 14 C -0.113 4.113 15 C -0.187 4.187 16 C 0.116 3.884 17 C -0.486 4.486 18 H 0.095 0.905 19 C -0.143 4.143 20 N -0.428 5.428 21 Si 0.735 3.265 22 H -0.185 1.185 23 H -0.200 1.200 24 H -0.199 1.199 25 C -0.227 4.227 26 C -0.279 4.279 27 C -0.042 4.042 28 C -0.010 4.010 29 H 0.095 0.905 30 H 0.091 0.909 31 H 0.050 0.950 32 H 0.067 0.933 33 H 0.119 0.881 34 H 0.105 0.895 35 H 0.111 0.889 36 H 0.243 0.757 37 H 0.231 0.769 38 H 0.108 0.892 39 H 0.110 0.890 40 H 0.139 0.861 41 H 0.089 0.911 42 H 0.127 0.873 43 H 0.195 0.805 44 H 0.082 0.918 45 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -7.400 16.609 11.806 21.679 hybrid contribution -0.149 -0.260 -0.888 0.937 sum -7.550 16.349 10.918 21.059 Atomic orbital electron populations 1.22407 0.85742 1.03324 1.00789 1.62143 1.08864 1.12936 1.43129 1.22523 0.94091 0.90596 1.01970 1.21792 0.90155 0.91000 0.94477 1.47986 1.02718 1.25725 1.38932 1.77156 0.93716 1.21180 1.23687 1.18821 0.86420 0.93275 0.94591 1.41701 1.06363 1.33144 1.49032 1.15723 0.85065 0.79562 0.79145 1.90928 1.30869 1.58486 1.60750 1.42495 1.07121 1.28092 1.54212 1.17208 0.99096 0.84047 0.92339 1.20021 1.05885 1.00629 1.01391 1.20466 0.98770 0.94116 0.97915 1.21416 0.95999 0.99212 1.02122 1.17507 0.90242 0.90537 0.90137 1.19576 1.22705 1.10055 0.96265 0.90497 1.25874 0.95281 0.98672 0.94489 1.69809 1.37909 1.35274 0.99762 0.86230 0.79304 0.81076 0.79892 1.18473 1.20038 1.19881 1.21017 1.02926 0.92871 1.05935 1.21397 0.88956 1.07336 1.10171 1.20876 0.94751 0.92167 0.96395 1.20958 0.87269 1.00645 0.92148 0.90505 0.90916 0.95023 0.93329 0.88081 0.89477 0.88941 0.75720 0.76933 0.89245 0.88981 0.86062 0.91126 0.87299 0.80483 0.91816 0.87298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.63 60.06 0.58 0.73 16 2 N -0.55 -4.68 4.92 -243.56 -1.20 -5.88 16 3 C 0.04 0.26 5.54 -3.59 -0.02 0.24 16 4 C 0.15 1.30 7.53 -3.76 -0.03 1.27 16 5 N -0.37 -4.95 4.06 -56.84 -0.23 -5.18 16 6 N -0.33 -5.11 12.65 31.54 0.40 -4.71 16 7 C 0.33 5.44 8.12 -154.06 -1.25 4.19 16 8 N -0.65 -10.00 5.45 -15.39 -0.08 -10.08 16 9 C 0.71 13.28 8.26 -86.91 -0.72 12.56 16 10 O -0.54 -12.30 11.18 5.28 0.06 -12.24 16 11 N -0.67 -12.03 5.35 -14.27 -0.08 -12.11 16 12 C 0.16 3.72 6.26 -83.76 -0.52 3.19 16 13 C -0.26 -5.63 9.97 -39.10 -0.39 -6.02 16 14 C -0.09 -2.18 10.02 -39.69 -0.40 -2.57 16 15 C -0.17 -4.40 8.66 -38.84 -0.34 -4.73 16 16 C 0.12 3.26 5.55 -106.85 -0.59 2.67 16 17 C -0.46 -12.52 9.06 -37.74 -0.34 -12.86 16 18 H 0.08 2.06 7.87 -52.49 -0.41 1.65 16 19 C 0.07 1.89 5.25 -17.35 -0.09 1.80 16 20 N -0.80 -21.24 10.81 55.55 0.60 -20.64 16 21 Si 0.91 19.29 29.57 -169.99 -5.03 14.26 16 22 H -0.26 -5.49 7.11 56.52 0.40 -5.09 16 23 H -0.27 -5.75 7.11 56.52 0.40 -5.35 16 24 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 25 C -0.21 -5.32 8.39 -38.68 -0.32 -5.64 16 26 C -0.25 -4.22 9.56 -40.00 -0.38 -4.60 16 27 C 0.08 1.19 6.68 -82.20 -0.55 0.64 16 28 C 0.12 1.23 5.87 -4.64 -0.03 1.21 16 29 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.33 7.92 -51.93 -0.41 -0.08 16 31 H 0.03 0.17 8.11 -51.93 -0.42 -0.25 16 32 H 0.05 0.35 8.07 -51.93 -0.42 -0.07 16 33 H 0.10 0.43 7.86 -51.93 -0.41 0.02 16 34 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.41 4.79 8.84 -40.82 -0.36 4.43 16 37 H 0.40 5.35 8.83 -40.82 -0.36 4.99 16 38 H 0.09 1.68 8.06 -52.49 -0.42 1.26 16 39 H 0.09 1.89 8.06 -52.48 -0.42 1.46 16 40 H 0.12 3.27 6.18 -52.49 -0.32 2.95 16 41 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 42 H 0.11 2.91 6.44 -52.48 -0.34 2.57 16 43 H 0.18 3.38 5.92 -52.49 -0.31 3.07 16 44 H 0.06 0.60 8.11 -51.93 -0.42 0.18 16 45 H 0.11 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 370.80 15.07 5.59 5.59 Total: -1.00 -33.64 370.80 -11.23 -44.86 By element: Atomic # 1 Polarization: 19.93 SS G_CDS: -5.86 Total: 14.07 kcal Atomic # 6 Polarization: -2.54 SS G_CDS: -5.40 Total: -7.94 kcal Atomic # 7 Polarization: -58.01 SS G_CDS: -0.59 Total: -58.60 kcal Atomic # 8 Polarization: -12.30 SS G_CDS: 0.06 Total: -12.24 kcal Atomic # 14 Polarization: 19.29 SS G_CDS: -5.03 Total: 14.26 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.64 -11.23 -44.86 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879845533.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.338 kcal (2) G-P(sol) polarization free energy of solvation -33.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds