Wall clock time and date at job start Sat Apr 11 2020 06:21:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46980 * 110.99976 * 2 1 4 4 C 1.53374 * 109.73357 * 165.19151 * 3 2 1 5 5 N 1.46660 * 108.23911 * 49.85016 * 4 3 2 6 6 N 1.39403 * 128.32914 * 163.44574 * 5 4 3 7 7 C 1.31475 * 108.05047 * 180.19828 * 6 5 4 8 8 N 1.40182 * 125.93615 * 179.97438 * 7 6 5 9 9 C 1.34779 * 119.99865 * 180.02562 * 8 7 6 10 10 O 1.21592 * 120.00082 * 359.97438 * 9 8 7 11 11 N 1.34781 * 119.99969 * 179.97438 * 9 8 7 12 12 C 1.39947 * 120.00074 * 174.81665 * 11 9 8 13 13 C 1.39290 * 119.94598 * 146.38172 * 12 11 9 14 14 C 1.38486 * 120.42691 * 180.02562 * 13 12 11 15 15 C 1.37685 * 120.32401 * 359.97438 * 14 13 12 16 16 C 1.40740 * 119.88383 * 0.02562 * 15 14 13 17 17 C 1.41411 * 120.21104 * 179.97438 * 16 15 14 18 18 H 1.07999 * 119.99739 * 151.79134 * 17 16 15 19 19 C 1.39929 * 119.99619 * 331.78801 * 17 16 15 20 20 N 1.30822 * 120.00257 * 348.98778 * 19 17 16 21 21 Si 1.86801 * 119.99646 * 168.99345 * 19 17 16 22 22 H 1.48498 * 109.47420 * 359.97438 * 21 19 17 23 23 H 1.48498 * 109.47221 * 120.00193 * 21 19 17 24 24 H 1.48505 * 109.46814 * 239.99996 * 21 19 17 25 25 C 1.38243 * 119.94766 * 326.11116 * 12 11 9 26 26 C 1.40647 * 108.12556 * 0.18023 * 7 6 5 27 27 C 1.34492 * 107.74977 * 359.59630 * 26 7 6 28 28 C 1.47362 * 111.00377 * 235.88465 * 2 1 3 29 29 H 1.09005 * 109.47067 * 188.07078 * 1 2 3 30 30 H 1.09002 * 109.47559 * 308.06465 * 1 2 3 31 31 H 1.08994 * 109.47334 * 68.07586 * 1 2 3 32 32 H 1.09005 * 109.42657 * 285.26684 * 3 2 1 33 33 H 1.08997 * 109.42776 * 45.10932 * 3 2 1 34 34 H 1.09002 * 109.70134 * 290.16743 * 4 3 2 35 35 H 1.09002 * 109.71915 * 169.54263 * 4 3 2 36 36 H 0.96999 * 120.00566 * 0.28845 * 8 7 6 37 37 H 0.96998 * 119.99984 * 354.82739 * 11 9 8 38 38 H 1.07997 * 119.78331 * 0.02562 * 13 12 11 39 39 H 1.08004 * 119.83619 * 180.02562 * 14 13 12 40 40 H 1.07995 * 120.06190 * 179.97438 * 15 14 13 41 41 H 0.97001 * 120.00377 * 180.02562 * 20 19 17 42 42 H 1.08005 * 120.15657 * 359.97438 * 25 12 11 43 43 H 1.08001 * 126.12446 * 179.73879 * 26 7 6 44 44 H 1.08995 * 109.74730 * 54.35839 * 28 2 1 45 45 H 1.08998 * 109.78439 * 293.65864 * 28 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9957 1.3722 0.0000 4 6 3.4843 1.3555 0.3690 5 7 4.1546 0.3586 -0.4724 6 7 5.5187 0.2125 -0.7195 7 6 5.6783 -0.8070 -1.5341 8 7 6.9014 -1.2830 -2.0267 9 6 6.9261 -2.3421 -2.8598 10 8 5.8875 -2.8851 -3.1839 11 7 8.1020 -2.7994 -3.3338 12 6 8.1384 -3.9630 -4.1105 13 6 9.0737 -4.0859 -5.1354 14 6 9.1182 -5.2327 -5.9104 15 6 8.2380 -6.2650 -5.6756 16 6 7.2875 -6.1551 -4.6435 17 6 6.3798 -7.2109 -4.3966 18 1 5.9842 -7.3617 -3.4031 19 6 5.9941 -8.0601 -5.4398 20 7 6.2955 -7.7564 -6.6760 21 14 5.0486 -9.6274 -5.0670 22 1 4.8350 -9.7402 -3.6017 23 1 3.7346 -9.5890 -5.7577 24 1 5.8251 -10.7995 -5.5451 25 6 7.2499 -4.9910 -3.8557 26 6 4.4082 -1.3342 -1.8293 27 6 3.4964 -0.6054 -1.1611 28 6 1.9971 -0.7716 -1.1390 29 1 -0.3633 -1.0175 0.1443 30 1 -0.3634 0.6336 0.8091 31 1 -0.3634 0.3837 -0.9533 32 1 1.8729 1.8076 -0.9917 33 1 1.4483 1.9706 0.7282 34 1 3.5995 1.0874 1.4192 35 1 3.9185 2.3392 0.1903 36 1 7.7303 -0.8525 -1.7649 37 1 8.9230 -2.3221 -3.1365 38 1 9.7685 -3.2816 -5.3268 39 1 9.8476 -5.3180 -6.7024 40 1 8.2762 -7.1573 -6.2829 41 1 6.0278 -8.3449 -7.3992 42 1 6.5275 -4.8985 -3.0581 43 1 4.2022 -2.1752 -2.4748 44 1 1.5711 -0.3944 -2.0686 45 1 1.7451 -1.8253 -1.0194 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000879845533.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:21:46 Heat of formation + Delta-G solvation = 78.054460 kcal Electronic energy + Delta-G solvation = -28546.646095 eV Core-core repulsion = 24565.411197 eV Total energy + Delta-G solvation = -3981.234898 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.75372 -41.49787 -39.32802 -38.62311 -36.32633 -35.92039 -34.85818 -33.82684 -32.17093 -31.71722 -30.10409 -29.13146 -27.88301 -27.22932 -25.34749 -24.18303 -23.30484 -22.83629 -22.19755 -21.37358 -20.48702 -19.55567 -18.96929 -18.12412 -17.62986 -17.21540 -17.09912 -16.55989 -16.42195 -16.33944 -15.99221 -15.84057 -15.75578 -15.32263 -14.93939 -14.70827 -14.58365 -14.08252 -13.94905 -13.72799 -13.50152 -13.40089 -13.10546 -12.84380 -12.82081 -12.58211 -12.53021 -12.47400 -12.19193 -11.96885 -11.78434 -11.70194 -11.57301 -11.27756 -11.01438 -10.73426 -9.93193 -9.47847 -9.33145 -9.27574 -8.67578 -8.54536 -6.35014 0.65043 0.83666 0.98015 1.07326 1.38213 1.48018 1.53695 1.57005 1.80687 2.23714 2.27906 2.69546 2.79114 3.04009 3.40445 3.55813 3.76647 3.91677 4.09165 4.19024 4.36037 4.45092 4.48052 4.52053 4.57027 4.60335 4.65678 4.67121 4.73928 4.80847 4.96219 5.06405 5.07975 5.13105 5.15678 5.21483 5.37262 5.57783 5.74422 5.77635 5.81832 5.83629 5.97479 6.06662 6.12321 6.15212 6.38034 6.59090 6.72529 6.97990 6.98170 7.03764 7.41895 8.40450 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012279 B = 0.002645 C = 0.002227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2279.814801 B =10582.838062 C =12570.979443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.558 5.558 3 C 0.040 3.960 4 C 0.134 3.866 5 N -0.361 5.361 6 N -0.333 5.333 7 C 0.305 3.695 8 N -0.631 5.631 9 C 0.705 3.295 10 O -0.581 6.581 11 N -0.657 5.657 12 C 0.173 3.827 13 C -0.243 4.243 14 C -0.092 4.092 15 C -0.192 4.192 16 C 0.088 3.912 17 C -0.499 4.499 18 H 0.064 0.936 19 C 0.032 3.968 20 N -0.832 5.832 21 Si 0.984 3.016 22 H -0.263 1.263 23 H -0.266 1.266 24 H -0.259 1.259 25 C -0.230 4.230 26 C -0.289 4.289 27 C 0.098 3.902 28 C 0.120 3.880 29 H 0.074 0.926 30 H 0.093 0.907 31 H 0.037 0.963 32 H 0.049 0.951 33 H 0.137 0.863 34 H 0.097 0.903 35 H 0.113 0.887 36 H 0.426 0.574 37 H 0.422 0.578 38 H 0.134 0.866 39 H 0.125 0.875 40 H 0.106 0.894 41 H 0.287 0.713 42 H 0.086 0.914 43 H 0.148 0.852 44 H 0.075 0.925 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.325 18.699 12.084 23.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.283 5.283 3 C -0.088 4.088 4 C 0.015 3.985 5 N -0.147 5.147 6 N -0.164 5.164 7 C 0.050 3.950 8 N -0.284 5.284 9 C 0.405 3.595 10 O -0.457 6.457 11 N -0.306 5.306 12 C 0.080 3.920 13 C -0.265 4.265 14 C -0.111 4.111 15 C -0.212 4.212 16 C 0.085 3.915 17 C -0.529 4.529 18 H 0.083 0.917 19 C -0.181 4.181 20 N -0.458 5.458 21 Si 0.805 3.195 22 H -0.187 1.187 23 H -0.191 1.191 24 H -0.183 1.183 25 C -0.252 4.252 26 C -0.320 4.320 27 C -0.031 4.031 28 C -0.009 4.009 29 H 0.093 0.907 30 H 0.111 0.889 31 H 0.056 0.944 32 H 0.068 0.932 33 H 0.155 0.845 34 H 0.115 0.885 35 H 0.131 0.869 36 H 0.265 0.735 37 H 0.260 0.740 38 H 0.152 0.848 39 H 0.143 0.857 40 H 0.124 0.876 41 H 0.097 0.903 42 H 0.105 0.895 43 H 0.165 0.835 44 H 0.093 0.907 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -7.562 18.946 12.752 24.057 hybrid contribution -0.088 -0.728 -1.076 1.302 sum -7.651 18.218 11.676 22.951 Atomic orbital electron populations 1.22477 0.83926 1.03835 1.01934 1.62160 1.10495 1.13760 1.41859 1.22643 0.92923 0.90114 1.03155 1.22318 0.91202 0.90773 0.94232 1.48474 1.02017 1.25859 1.38304 1.77080 0.95374 1.20597 1.23299 1.18962 0.86503 0.94022 0.95526 1.41311 1.07122 1.32084 1.47898 1.15821 0.84545 0.79906 0.79230 1.90934 1.32531 1.59992 1.62210 1.42176 1.08104 1.26899 1.53459 1.17236 0.97934 0.84384 0.92487 1.20456 1.05414 1.01039 0.99549 1.20843 0.98267 0.93476 0.98491 1.21381 0.97305 1.00119 1.02432 1.17836 0.91049 0.91299 0.91306 1.19762 1.24513 1.12130 0.96495 0.91748 1.26705 0.95921 1.01545 0.93912 1.69856 1.38835 1.36590 1.00567 0.85137 0.78090 0.76823 0.79471 1.18676 1.19118 1.18290 1.20960 1.04104 0.94067 1.06070 1.21254 0.90461 1.08199 1.12114 1.21223 0.96175 0.91036 0.94679 1.20996 0.84972 1.01257 0.93696 0.90726 0.88853 0.94398 0.93242 0.84501 0.88526 0.86878 0.73512 0.73973 0.84786 0.85736 0.87567 0.90277 0.89535 0.83463 0.90737 0.87493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 9.63 127.69 1.23 1.46 16 2 N -0.56 -8.33 4.92 -924.50 -4.55 -12.88 16 3 C 0.04 0.43 5.54 86.41 0.48 0.91 16 4 C 0.13 2.01 7.53 86.47 0.65 2.66 16 5 N -0.36 -9.32 4.06 -333.75 -1.36 -10.68 16 6 N -0.33 -10.19 12.65 -54.14 -0.69 -10.88 16 7 C 0.31 10.39 8.12 133.30 1.08 11.48 16 8 N -0.63 -19.45 5.45 -320.86 -1.75 -21.20 16 9 C 0.71 27.12 8.26 179.05 1.48 28.59 16 10 O -0.58 -28.17 11.18 -4.01 -0.04 -28.22 16 11 N -0.66 -23.03 5.35 -317.31 -1.70 -24.73 16 12 C 0.17 7.78 6.26 38.10 0.24 8.02 16 13 C -0.24 -10.11 9.97 22.58 0.23 -9.88 16 14 C -0.09 -4.18 10.02 22.20 0.22 -3.96 16 15 C -0.19 -10.39 8.66 22.75 0.20 -10.19 16 16 C 0.09 5.08 5.55 -21.31 -0.12 4.96 16 17 C -0.50 -29.16 9.06 23.46 0.21 -28.95 16 18 H 0.06 3.74 7.87 -2.91 -0.02 3.72 16 19 C 0.03 1.74 5.25 85.25 0.45 2.19 16 20 N -0.83 -45.61 10.81 21.82 0.24 -45.37 16 21 Si 0.98 40.82 29.57 68.60 2.03 42.85 16 22 H -0.26 -10.84 7.11 99.48 0.71 -10.13 16 23 H -0.27 -10.59 7.11 99.48 0.71 -9.89 16 24 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 25 C -0.23 -12.48 8.39 22.85 0.19 -12.29 16 26 C -0.29 -10.38 9.56 22.00 0.21 -10.17 16 27 C 0.10 2.76 6.68 41.18 0.27 3.03 16 28 C 0.12 2.43 5.87 85.52 0.50 2.93 16 29 H 0.07 0.73 8.14 -2.38 -0.02 0.71 16 30 H 0.09 0.50 7.92 -2.39 -0.02 0.48 16 31 H 0.04 0.32 8.11 -2.39 -0.02 0.30 16 32 H 0.05 0.56 8.07 -2.38 -0.02 0.54 16 33 H 0.14 0.54 7.86 -2.39 -0.02 0.52 16 34 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 36 H 0.43 9.53 8.84 -92.71 -0.82 8.71 16 37 H 0.42 10.37 8.83 -92.71 -0.82 9.55 16 38 H 0.13 4.40 8.06 -2.91 -0.02 4.37 16 39 H 0.12 4.78 8.06 -2.91 -0.02 4.76 16 40 H 0.11 5.97 6.18 -2.91 -0.02 5.95 16 41 H 0.29 14.12 8.30 -92.71 -0.77 13.35 16 42 H 0.09 4.99 6.44 -2.91 -0.02 4.97 16 43 H 0.15 6.20 5.92 -2.91 -0.02 6.18 16 44 H 0.07 1.35 8.11 -2.39 -0.02 1.33 16 45 H 0.11 2.20 8.14 -2.39 -0.02 2.18 16 Total: -1.00 -78.60 370.80 -0.88 -79.48 By element: Atomic # 1 Polarization: 41.40 SS G_CDS: -0.58 Total: 40.82 kcal Atomic # 6 Polarization: -16.71 SS G_CDS: 7.52 Total: -9.19 kcal Atomic # 7 Polarization: -115.94 SS G_CDS: -9.80 Total: -125.74 kcal Atomic # 8 Polarization: -28.17 SS G_CDS: -0.04 Total: -28.22 kcal Atomic # 14 Polarization: 40.82 SS G_CDS: 2.03 Total: 42.85 kcal Total: -78.60 -0.88 -79.48 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000879845533.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.530 kcal (2) G-P(sol) polarization free energy of solvation -78.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.877 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds