Wall clock time and date at job start Sat Apr 11 2020 06:22:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46497 * 119.99654 * 2 1 4 4 C 1.38999 * 120.00229 * 180.02562 * 2 1 3 5 5 C 1.39136 * 119.70498 * 4.99444 * 4 2 1 6 6 C 1.38297 * 119.09743 * 180.02562 * 5 4 2 7 7 C 1.38880 * 118.50692 * 359.97438 * 6 5 4 8 8 C 1.38029 * 119.32835 * 0.02562 * 7 6 5 9 9 C 1.50702 * 119.57054 * 179.97438 * 8 7 6 10 10 N 1.46502 * 109.46846 * 95.00227 * 9 8 7 11 11 C 1.34777 * 119.99933 * 179.97438 * 10 9 8 12 12 O 1.21571 * 119.99915 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99741 * 179.97438 * 11 10 9 14 14 C 1.39248 * 119.99809 * 185.80166 * 13 11 10 15 15 C 1.39688 * 119.57144 * 18.81372 * 14 13 11 16 16 C 1.38654 * 119.49170 * 180.02562 * 15 14 13 17 17 C 1.38361 * 118.67011 * 359.74529 * 16 15 14 18 18 C 1.40572 * 119.12724 * 0.47762 * 17 16 15 19 19 C 1.41332 * 119.78142 * 179.79153 * 18 17 16 20 20 H 1.08003 * 120.00478 * 6.97687 * 19 18 17 21 21 C 1.40033 * 119.99670 * 186.97804 * 19 18 17 22 22 N 1.30748 * 119.99691 * 181.92997 * 21 19 18 23 23 Si 1.86797 * 120.00248 * 1.93399 * 21 19 18 24 24 H 1.48494 * 109.47230 * 179.97438 * 23 21 19 25 25 H 1.48497 * 109.46980 * 300.00169 * 23 21 19 26 26 H 1.48504 * 109.46704 * 60.00011 * 23 21 19 27 27 N 1.31898 * 119.57801 * 198.79574 * 14 13 11 28 28 N 1.31968 * 120.85639 * 0.25411 * 8 7 6 29 29 H 1.09000 * 109.46759 * 270.00028 * 1 2 3 30 30 H 1.08999 * 109.47296 * 30.00429 * 1 2 3 31 31 H 1.09003 * 109.46661 * 150.00144 * 1 2 3 32 32 H 1.09004 * 109.47631 * 269.99785 * 3 2 1 33 33 H 1.09003 * 109.47502 * 30.00084 * 3 2 1 34 34 H 1.08998 * 109.47432 * 150.00386 * 3 2 1 35 35 H 1.07999 * 120.45145 * 0.04834 * 5 4 2 36 36 H 1.07998 * 120.74895 * 179.97438 * 6 5 4 37 37 H 1.08001 * 120.34014 * 180.02562 * 7 6 5 38 38 H 1.08993 * 109.47483 * 335.00257 * 9 8 7 39 39 H 1.08998 * 109.47051 * 214.99558 * 9 8 7 40 40 H 0.97003 * 120.00072 * 359.97438 * 10 9 8 41 41 H 0.96995 * 120.00067 * 5.81127 * 13 11 10 42 42 H 1.07993 * 120.25603 * 359.97438 * 15 14 13 43 43 H 1.07993 * 120.66175 * 180.02562 * 16 15 14 44 44 H 1.07991 * 120.43359 * 180.27030 * 17 16 15 45 45 H 0.97005 * 120.00349 * 354.83919 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1601 -1.2037 -0.0005 5 6 1.4622 -2.4028 -0.1063 6 6 2.1663 -3.5931 -0.1050 7 6 3.5502 -3.5445 0.0019 8 6 4.1778 -2.3194 0.1034 9 6 5.6791 -2.2603 0.2202 10 7 6.2647 -2.0607 -1.1078 11 6 7.6025 -1.9761 -1.2486 12 8 8.3232 -2.0659 -0.2737 13 7 8.1412 -1.7930 -2.4704 14 6 9.5236 -1.8263 -2.6338 15 6 10.3194 -2.4250 -1.6542 16 6 11.6958 -2.4568 -1.8184 17 6 12.2414 -1.8947 -2.9589 18 6 11.3875 -1.3029 -3.9058 19 6 11.9305 -0.7207 -5.0736 20 1 12.9825 -0.8293 -5.2923 21 6 11.1042 -0.0031 -5.9473 22 7 11.5986 0.5033 -7.0466 23 14 9.2958 0.2308 -5.5420 24 1 8.6455 1.0206 -6.6183 25 1 8.6372 -1.0958 -5.4338 26 1 9.1674 0.9540 -4.2514 27 7 10.0648 -1.2925 -3.7117 28 7 3.4799 -1.1994 0.1051 29 1 -0.3633 0.0000 1.0277 30 1 -0.3634 0.8899 -0.5139 31 1 -0.3633 -0.8900 -0.5138 32 1 2.3792 1.5835 -1.0277 33 1 1.6084 2.0284 0.5138 34 1 3.1499 1.1385 0.5138 35 1 0.3854 -2.4039 -0.1886 36 1 1.6517 -4.5392 -0.1853 37 1 4.1294 -4.4560 0.0054 38 1 6.0478 -3.1948 0.6431 39 1 5.9607 -1.4315 0.8697 40 1 5.6897 -1.9895 -1.8857 41 1 7.5659 -1.6379 -3.2358 42 1 9.8661 -2.8591 -0.7754 43 1 12.3289 -2.9151 -1.0732 44 1 13.3095 -1.9075 -3.1178 45 1 12.5512 0.4471 -7.2210 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881149396.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:01 Heat of formation + Delta-G solvation = 59.801348 kcal Electronic energy + Delta-G solvation = -28237.713953 eV Core-core repulsion = 24255.687541 eV Total energy + Delta-G solvation = -3982.026412 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.78856 -40.16022 -38.31552 -37.09176 -34.97396 -34.39225 -33.44719 -32.73230 -31.13515 -31.03995 -29.39110 -28.67532 -26.65577 -25.54164 -25.23079 -22.73993 -22.08195 -21.71306 -21.45506 -20.28197 -18.70130 -17.93310 -17.65277 -17.12080 -16.70452 -15.99067 -15.76006 -15.51668 -15.17255 -14.94607 -14.86350 -14.53100 -14.25479 -13.90784 -13.64804 -13.54894 -13.17331 -13.08684 -12.96469 -12.85028 -12.52081 -12.49548 -12.28773 -12.17432 -11.95853 -11.80403 -11.17345 -10.76723 -10.41782 -10.33141 -10.03734 -9.94991 -9.67847 -9.62751 -9.38675 -9.11806 -9.01981 -8.49493 -7.89815 -7.75730 -7.30706 -7.20171 -4.72909 0.82320 1.16620 2.44182 2.54826 2.70192 2.78349 3.47084 3.56641 3.62686 3.70591 3.96552 4.00372 4.40694 4.42559 4.43240 4.55093 4.70152 4.74977 4.79126 4.93846 4.95965 5.07888 5.19466 5.28310 5.33808 5.41174 5.58113 5.62078 5.63689 5.74180 5.87928 5.98183 6.13996 6.22436 6.33619 6.46732 6.57331 6.58587 6.71738 6.94087 6.99496 7.21621 7.37448 7.49029 7.66845 7.80375 7.85104 7.95928 8.24109 8.37419 8.68083 8.79466 9.46054 10.04351 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014618 B = 0.002510 C = 0.002256 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.971394 B =11153.811326 C =12408.759147 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.619 5.619 3 C 0.097 3.903 4 C 0.401 3.599 5 C -0.236 4.236 6 C -0.034 4.034 7 C -0.213 4.213 8 C 0.159 3.841 9 C 0.194 3.806 10 N -0.738 5.738 11 C 0.712 3.288 12 O -0.563 6.563 13 N -0.667 5.667 14 C 0.406 3.594 15 C -0.310 4.310 16 C -0.034 4.034 17 C -0.280 4.280 18 C 0.275 3.725 19 C -0.477 4.477 20 H 0.083 0.917 21 C 0.043 3.957 22 N -0.809 5.809 23 Si 1.158 2.842 24 H -0.334 1.334 25 H -0.285 1.285 26 H -0.294 1.294 27 N -0.601 5.601 28 N -0.526 5.526 29 H 0.052 0.948 30 H 0.072 0.928 31 H 0.070 0.930 32 H 0.049 0.951 33 H 0.062 0.938 34 H 0.081 0.919 35 H 0.132 0.868 36 H 0.135 0.865 37 H 0.135 0.865 38 H 0.086 0.914 39 H 0.084 0.916 40 H 0.397 0.603 41 H 0.404 0.596 42 H 0.142 0.858 43 H 0.106 0.894 44 H 0.105 0.895 45 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.325 -4.532 12.772 27.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.333 5.333 3 C -0.046 4.046 4 C 0.167 3.833 5 C -0.261 4.261 6 C -0.060 4.060 7 C -0.236 4.236 8 C 0.020 3.980 9 C 0.069 3.931 10 N -0.395 5.395 11 C 0.412 3.588 12 O -0.439 6.439 13 N -0.314 5.314 14 C 0.174 3.826 15 C -0.334 4.334 16 C -0.058 4.058 17 C -0.303 4.303 18 C 0.151 3.849 19 C -0.510 4.510 20 H 0.101 0.899 21 C -0.178 4.178 22 N -0.431 5.431 23 Si 0.994 3.006 24 H -0.268 1.268 25 H -0.214 1.214 26 H -0.222 1.222 27 N -0.327 5.327 28 N -0.243 5.243 29 H 0.070 0.930 30 H 0.091 0.909 31 H 0.089 0.911 32 H 0.067 0.933 33 H 0.081 0.919 34 H 0.100 0.900 35 H 0.150 0.850 36 H 0.152 0.848 37 H 0.153 0.847 38 H 0.104 0.896 39 H 0.103 0.897 40 H 0.231 0.769 41 H 0.239 0.761 42 H 0.160 0.840 43 H 0.124 0.876 44 H 0.123 0.877 45 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -25.127 -2.651 12.523 28.200 hybrid contribution 1.110 -1.592 0.267 1.959 sum -24.017 -4.243 12.789 27.539 Atomic orbital electron populations 1.21709 0.78510 1.03069 1.01502 1.46208 1.05039 1.03169 1.78909 1.21595 0.97757 0.83680 1.01536 1.18276 0.88191 0.85959 0.90898 1.21473 1.01060 0.91933 1.11616 1.21325 0.93836 0.97875 0.92964 1.21726 0.95230 0.98768 1.07873 1.20809 0.95255 0.87899 0.94005 1.19918 0.85263 1.03421 0.84493 1.44962 1.05073 1.79556 1.09921 1.15627 0.81814 0.78062 0.83271 1.90854 1.58814 1.56433 1.37789 1.42325 1.06345 1.73564 1.09178 1.17788 0.81398 0.91981 0.91413 1.21555 0.93543 1.14410 1.03940 1.20932 0.94303 0.95045 0.95538 1.21582 0.99134 1.11699 0.97840 1.18255 0.85252 0.88989 0.92392 1.20704 0.97844 1.28274 1.04154 0.89881 1.27763 1.09762 0.89790 0.90456 1.70646 1.16958 1.33883 1.21603 0.81768 0.70731 0.75764 0.72298 1.26800 1.21354 1.22194 1.65859 1.14012 1.29361 1.23443 1.66929 1.06163 1.31471 1.19786 0.92982 0.90946 0.91097 0.93278 0.91911 0.90012 0.84976 0.84757 0.84694 0.89566 0.89741 0.76904 0.76145 0.84042 0.87620 0.87723 0.90633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.47 10.28 59.85 0.62 1.08 16 2 N -0.62 -5.20 3.39 -189.66 -0.64 -5.85 16 3 C 0.10 0.78 10.50 59.85 0.63 1.41 16 4 C 0.40 4.05 7.37 -155.02 -1.14 2.90 16 5 C -0.24 -1.89 9.27 -39.23 -0.36 -2.26 16 6 C -0.03 -0.25 10.17 -39.32 -0.40 -0.65 16 7 C -0.21 -1.84 9.71 -39.42 -0.38 -2.22 16 8 C 0.16 1.68 6.14 -82.61 -0.51 1.17 16 9 C 0.19 2.24 5.98 -5.19 -0.03 2.21 16 10 N -0.74 -9.67 5.55 -66.42 -0.37 -10.04 16 11 C 0.71 12.58 8.40 -86.91 -0.73 11.85 16 12 O -0.56 -11.61 13.14 5.30 0.07 -11.54 16 13 N -0.67 -12.91 5.42 -15.79 -0.09 -12.99 16 14 C 0.41 9.59 7.51 -155.00 -1.16 8.42 16 15 C -0.31 -7.16 8.83 -38.89 -0.34 -7.51 16 16 C -0.03 -0.76 10.15 -39.38 -0.40 -1.16 16 17 C -0.28 -6.83 9.83 -38.66 -0.38 -7.21 16 18 C 0.28 7.39 6.39 -85.00 -0.54 6.85 16 19 C -0.48 -13.26 9.58 -37.73 -0.36 -13.62 16 20 H 0.08 2.29 8.05 -52.48 -0.42 1.87 16 21 C 0.04 1.19 5.52 -17.34 -0.10 1.09 16 22 N -0.81 -22.37 13.65 55.55 0.76 -21.61 16 23 Si 1.16 28.69 25.54 -169.99 -4.34 24.35 16 24 H -0.33 -8.17 7.11 56.52 0.40 -7.77 16 25 H -0.29 -6.78 6.69 56.52 0.38 -6.40 16 26 H -0.29 -7.44 7.10 56.52 0.40 -7.04 16 27 N -0.60 -15.59 4.58 -10.26 -0.05 -15.63 16 28 N -0.53 -6.08 8.99 -8.67 -0.08 -6.16 16 29 H 0.05 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.07 0.26 8.07 -51.93 -0.42 -0.16 16 31 H 0.07 0.28 5.98 -51.93 -0.31 -0.03 16 32 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.37 8.07 -51.93 -0.42 -0.05 16 34 H 0.08 0.79 7.30 -51.93 -0.38 0.41 16 35 H 0.13 0.75 6.02 -52.49 -0.32 0.43 16 36 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 37 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 38 H 0.09 0.92 8.04 -51.93 -0.42 0.51 16 39 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.40 4.47 8.49 -40.82 -0.35 4.12 16 41 H 0.40 6.91 8.84 -40.82 -0.36 6.54 16 42 H 0.14 3.21 5.33 -52.51 -0.28 2.93 16 43 H 0.11 2.02 8.06 -52.49 -0.42 1.59 16 44 H 0.10 2.38 8.06 -52.49 -0.42 1.95 16 45 H 0.28 7.47 8.72 -40.82 -0.36 7.12 16 LS Contribution 376.37 15.07 5.67 5.67 Total: -1.00 -33.75 376.37 -10.47 -44.22 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: -5.81 Total: 7.23 kcal Atomic # 6 Polarization: 7.95 SS G_CDS: -5.60 Total: 2.35 kcal Atomic # 7 Polarization: -71.82 SS G_CDS: -0.46 Total: -72.28 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: 0.07 Total: -11.54 kcal Atomic # 14 Polarization: 28.69 SS G_CDS: -4.34 Total: 24.35 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.75 -10.47 -44.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881149396.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.024 kcal (2) G-P(sol) polarization free energy of solvation -33.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.223 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds