Wall clock time and date at job start Sat Apr 11 2020 06:22:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46902 * 110.99678 * 2 1 4 4 C 1.39009 * 111.00221 * 123.95327 * 2 1 3 5 5 N 1.32428 * 119.70373 * 304.91086 * 4 2 1 6 6 C 1.31945 * 121.61916 * 180.28664 * 5 4 2 7 7 C 1.38062 * 120.85359 * 359.68757 * 6 5 4 8 8 C 1.38836 * 119.33325 * 0.02562 * 7 6 5 9 9 C 1.38348 * 118.50352 * 359.97438 * 8 7 6 10 10 C 1.50693 * 120.45117 * 179.97438 * 9 8 7 11 11 N 1.46504 * 109.47144 * 257.07552 * 10 9 8 12 12 C 1.34778 * 120.00104 * 184.99377 * 11 10 9 13 13 O 1.21571 * 119.99966 * 359.97438 * 12 11 10 14 14 N 1.34774 * 119.99965 * 179.97438 * 12 11 10 15 15 C 1.39241 * 120.00187 * 184.93832 * 14 12 11 16 16 C 1.39689 * 119.58011 * 175.02245 * 15 14 12 17 17 C 1.38646 * 119.49431 * 179.97438 * 16 15 14 18 18 C 1.38352 * 118.67286 * 359.72158 * 17 16 15 19 19 C 1.40570 * 119.12943 * 0.52111 * 18 17 16 20 20 C 1.41331 * 119.78610 * 179.75219 * 19 18 17 21 21 H 1.08001 * 120.00273 * 6.13902 * 20 19 18 22 22 C 1.40031 * 120.00202 * 186.14954 * 20 19 18 23 23 N 1.30738 * 119.99840 * 6.14840 * 22 20 19 24 24 Si 1.86802 * 119.99927 * 186.15324 * 22 20 19 25 25 H 1.48496 * 109.47132 * 264.99924 * 24 22 20 26 26 H 1.48503 * 109.47326 * 25.00119 * 24 22 20 27 27 H 1.48500 * 109.46914 * 144.99864 * 24 22 20 28 28 N 1.31911 * 119.57523 * 354.99347 * 15 14 12 29 29 H 1.09005 * 109.46977 * 296.04315 * 1 2 3 30 30 H 1.09000 * 109.47556 * 56.04812 * 1 2 3 31 31 H 1.09001 * 109.46682 * 176.04988 * 1 2 3 32 32 H 1.08999 * 109.47219 * 188.80947 * 3 2 1 33 33 H 1.09000 * 109.47216 * 308.81351 * 3 2 1 34 34 H 1.09000 * 109.47218 * 68.81392 * 3 2 1 35 35 H 1.08005 * 119.56811 * 179.70387 * 6 5 4 36 36 H 1.08002 * 120.33243 * 180.02562 * 7 6 5 37 37 H 1.08000 * 120.75278 * 179.97438 * 8 7 6 38 38 H 1.09000 * 109.47492 * 137.07689 * 10 9 8 39 39 H 1.08998 * 109.47438 * 17.07368 * 10 9 8 40 40 H 0.97002 * 119.99634 * 4.98634 * 11 10 9 41 41 H 0.97000 * 119.99985 * 4.93615 * 14 12 11 42 42 H 1.07998 * 120.24755 * 359.97438 * 16 15 14 43 43 H 1.07996 * 120.65694 * 179.97438 * 17 16 15 44 44 H 1.07994 * 120.43295 * 180.28203 * 18 17 16 45 45 H 0.97001 * 119.99984 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9672 -0.7248 1.0765 5 7 1.5878 -0.4163 2.3072 6 6 2.0412 -1.0753 3.3565 7 6 2.9290 -2.1219 3.2059 8 6 3.3473 -2.4810 1.9317 9 6 2.8549 -1.7716 0.8508 10 6 3.2800 -2.1237 -0.5514 11 7 4.2690 -1.1502 -1.0208 12 6 4.7196 -1.2058 -2.2898 13 8 4.3057 -2.0640 -3.0448 14 7 5.6291 -0.3099 -2.7218 15 6 6.0181 -0.3020 -4.0587 16 6 6.8812 0.6949 -4.5199 17 6 7.2678 0.7008 -5.8514 18 6 6.7874 -0.2922 -6.6865 19 6 5.9176 -1.2647 -6.1634 20 6 5.4144 -2.2823 -7.0053 21 1 5.7739 -2.3708 -8.0198 22 6 4.4494 -3.1757 -6.5242 23 7 3.9259 -2.9969 -5.3395 24 14 3.9100 -4.6230 -7.5749 25 1 2.6837 -4.2578 -8.3285 26 1 4.9924 -4.9719 -8.5299 27 1 3.6253 -5.7898 -6.7015 28 7 5.5674 -1.2364 -4.8735 29 1 -0.3633 0.4512 0.9234 30 1 -0.3634 0.5739 -0.8524 31 1 -0.3633 -1.0253 -0.0708 32 1 3.0736 1.3468 -0.1574 33 1 1.5242 1.9415 -0.8007 34 1 1.7788 1.8438 0.9582 35 1 1.7133 -0.7926 4.3459 36 1 3.2944 -2.6558 4.0707 37 1 4.0415 -3.2956 1.7875 38 1 2.4115 -2.1055 -1.2098 39 1 3.7201 -3.1209 -0.5581 40 1 4.5995 -0.4656 -0.4183 41 1 6.0127 0.3295 -2.1013 42 1 7.2444 1.4552 -3.8444 43 1 7.9339 1.4628 -6.2280 44 1 7.0738 -0.3175 -7.7274 45 1 3.2572 -3.6155 -5.0064 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881155146.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:07 Heat of formation + Delta-G solvation = 91.808900 kcal Electronic energy + Delta-G solvation = -29465.085878 eV Core-core repulsion = 25484.447417 eV Total energy + Delta-G solvation = -3980.638461 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.87966 -39.28780 -37.62061 -36.97683 -34.90292 -33.86460 -32.90033 -32.24278 -30.81051 -30.20214 -28.85881 -27.71670 -26.33563 -25.34260 -25.13879 -22.57395 -21.89949 -21.48083 -21.04166 -19.71894 -18.01143 -17.47909 -17.09818 -16.96855 -16.18274 -15.51296 -15.43600 -14.84744 -14.56991 -14.45818 -14.32652 -14.26019 -13.96935 -13.59842 -13.46822 -13.24416 -12.96869 -12.76485 -12.68648 -12.38281 -12.30276 -11.88100 -11.85107 -11.80473 -11.55849 -11.10517 -10.87534 -10.58207 -10.40171 -10.05710 -9.92044 -9.88725 -9.56590 -9.24292 -8.95362 -8.90474 -8.70909 -8.32179 -7.88434 -7.12133 -6.85552 -6.08103 -4.29970 0.77516 0.99392 2.91891 3.20158 3.22957 3.25693 3.27399 3.33837 3.51688 3.64958 4.13601 4.22664 4.34306 4.62341 4.70780 4.80285 4.90132 4.96994 5.02774 5.18128 5.25348 5.32849 5.40455 5.49997 5.63536 5.76840 5.78563 5.87891 6.02654 6.12455 6.17128 6.22075 6.27822 6.55221 6.64480 6.69588 6.87663 6.92527 7.06621 7.11468 7.31844 7.45153 7.67486 7.70083 7.83366 7.89048 8.25324 8.38742 8.76064 8.89271 9.13939 9.70668 10.35048 10.57001 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012924 B = 0.003164 C = 0.002858 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2165.957395 B = 8846.245626 C = 9794.071680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.486 5.486 3 C 0.034 3.966 4 C 0.307 3.693 5 N -0.515 5.515 6 C 0.109 3.891 7 C -0.180 4.180 8 C -0.056 4.056 9 C -0.121 4.121 10 C 0.202 3.798 11 N -0.748 5.748 12 C 0.668 3.332 13 O -0.465 6.465 14 N -0.674 5.674 15 C 0.390 3.610 16 C -0.359 4.359 17 C -0.036 4.036 18 C -0.309 4.309 19 C 0.274 3.726 20 C -0.428 4.428 21 H 0.081 0.919 22 C 0.059 3.941 23 N -0.650 5.650 24 Si 0.893 3.107 25 H -0.273 1.273 26 H -0.264 1.264 27 H -0.278 1.278 28 N -0.473 5.473 29 H 0.041 0.959 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.076 0.924 34 H 0.037 0.963 35 H 0.153 0.847 36 H 0.136 0.864 37 H 0.140 0.860 38 H 0.086 0.914 39 H 0.063 0.937 40 H 0.380 0.620 41 H 0.393 0.607 42 H 0.089 0.911 43 H 0.095 0.905 44 H 0.095 0.905 45 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.676 3.355 18.104 18.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.208 5.208 3 C -0.113 4.113 4 C 0.078 3.922 5 N -0.227 5.227 6 C -0.049 4.049 7 C -0.200 4.200 8 C -0.083 4.083 9 C -0.125 4.125 10 C 0.077 3.923 11 N -0.408 5.408 12 C 0.367 3.633 13 O -0.329 6.329 14 N -0.322 5.322 15 C 0.150 3.850 16 C -0.385 4.385 17 C -0.060 4.060 18 C -0.332 4.332 19 C 0.149 3.851 20 C -0.458 4.458 21 H 0.099 0.901 22 C -0.170 4.170 23 N -0.268 5.268 24 Si 0.718 3.282 25 H -0.198 1.198 26 H -0.188 1.188 27 H -0.203 1.203 28 N -0.191 5.191 29 H 0.059 0.941 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.055 0.945 35 H 0.170 0.830 36 H 0.154 0.846 37 H 0.158 0.842 38 H 0.104 0.896 39 H 0.081 0.919 40 H 0.211 0.789 41 H 0.226 0.774 42 H 0.107 0.893 43 H 0.113 0.887 44 H 0.113 0.887 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.321 2.202 17.482 18.719 hybrid contribution 0.986 0.497 0.665 1.289 sum -5.335 2.698 18.146 19.106 Atomic orbital electron populations 1.22378 0.85335 1.02650 1.01385 1.60136 1.09363 1.15005 1.36302 1.22370 1.01000 0.86828 1.01057 1.19817 0.92543 0.92613 0.87220 1.67747 1.25631 1.29574 0.99702 1.22537 0.93432 0.91854 0.97080 1.22126 1.00088 0.99588 0.98161 1.21606 0.96854 0.98230 0.91598 1.20766 0.98438 0.96346 0.96996 1.19604 0.92568 0.91294 0.88786 1.45144 1.47395 1.36078 1.12136 1.16331 0.81225 0.83881 0.81897 1.91360 1.56750 1.33445 1.51334 1.42548 1.44079 1.36542 1.09037 1.18306 0.91131 0.91850 0.83761 1.20426 1.14874 1.06049 0.97185 1.20535 0.96334 0.96200 0.92931 1.21610 1.10673 1.01760 0.99136 1.18369 0.88063 0.90634 0.88073 1.19547 1.18126 1.09783 0.98382 0.90064 1.26139 0.96854 0.98765 0.95258 1.70262 1.14197 1.30094 1.12270 0.86549 0.79575 0.81442 0.80654 1.19840 1.18776 1.20314 1.68631 1.25673 1.21758 1.03066 0.94060 0.90630 0.91483 0.91319 0.90519 0.94479 0.82960 0.84629 0.84173 0.89636 0.91860 0.78862 0.77435 0.89268 0.88737 0.88675 0.91570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.33 9.39 60.06 0.56 0.89 16 2 N -0.49 -6.02 4.21 -188.97 -0.80 -6.82 16 3 C 0.03 0.38 9.57 60.07 0.57 0.96 16 4 C 0.31 3.72 5.34 -155.01 -0.83 2.90 16 5 N -0.51 -5.91 9.45 -12.44 -0.12 -6.03 16 6 C 0.11 0.98 11.17 -17.57 -0.20 0.78 16 7 C -0.18 -1.42 10.10 -39.42 -0.40 -1.82 16 8 C -0.06 -0.52 9.80 -39.32 -0.39 -0.91 16 9 C -0.12 -1.41 5.29 -104.27 -0.55 -1.97 16 10 C 0.20 2.88 5.42 -5.20 -0.03 2.86 16 11 N -0.75 -11.34 5.55 -66.42 -0.37 -11.71 16 12 C 0.67 13.81 8.52 -86.92 -0.74 13.07 16 13 O -0.46 -11.97 12.22 5.30 0.06 -11.91 16 14 N -0.67 -13.55 5.39 -15.79 -0.09 -13.64 16 15 C 0.39 9.67 7.43 -154.99 -1.15 8.52 16 16 C -0.36 -8.21 9.96 -38.89 -0.39 -8.60 16 17 C -0.04 -0.83 10.15 -39.39 -0.40 -1.23 16 18 C -0.31 -7.93 9.83 -38.66 -0.38 -8.31 16 19 C 0.27 7.84 6.53 -85.00 -0.55 7.28 16 20 C -0.43 -11.99 9.13 -37.73 -0.34 -12.34 16 21 H 0.08 2.13 7.85 -52.49 -0.41 1.72 16 22 C 0.06 1.60 5.48 -17.35 -0.09 1.50 16 23 N -0.65 -18.35 9.18 55.55 0.51 -17.84 16 24 Si 0.89 19.60 29.56 -169.99 -5.03 14.58 16 25 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 26 H -0.26 -5.69 7.11 56.52 0.40 -5.28 16 27 H -0.28 -6.04 7.11 56.52 0.40 -5.63 16 28 N -0.47 -13.52 5.78 -10.26 -0.06 -13.58 16 29 H 0.04 0.45 7.75 -51.93 -0.40 0.04 16 30 H 0.07 0.77 8.07 -51.93 -0.42 0.35 16 31 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.76 8.08 -51.93 -0.42 0.34 16 33 H 0.08 0.81 8.04 -51.93 -0.42 0.39 16 34 H 0.04 0.40 7.91 -51.93 -0.41 -0.01 16 35 H 0.15 0.94 8.06 -52.48 -0.42 0.51 16 36 H 0.14 0.70 8.06 -52.49 -0.42 0.27 16 37 H 0.14 1.08 8.05 -52.49 -0.42 0.66 16 38 H 0.09 1.43 7.91 -51.93 -0.41 1.02 16 39 H 0.06 0.91 8.01 -51.93 -0.42 0.50 16 40 H 0.38 4.77 8.43 -40.82 -0.34 4.43 16 41 H 0.39 6.14 8.71 -40.82 -0.36 5.78 16 42 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 43 H 0.09 1.86 8.06 -52.49 -0.42 1.43 16 44 H 0.10 2.27 8.06 -52.49 -0.42 1.85 16 45 H 0.27 7.23 8.29 -40.82 -0.34 6.90 16 LS Contribution 381.31 15.07 5.75 5.75 Total: -1.00 -34.62 381.31 -11.53 -46.16 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: -6.10 Total: 11.44 kcal Atomic # 6 Polarization: 8.90 SS G_CDS: -5.30 Total: 3.60 kcal Atomic # 7 Polarization: -68.69 SS G_CDS: -0.92 Total: -69.61 kcal Atomic # 8 Polarization: -11.97 SS G_CDS: 0.06 Total: -11.91 kcal Atomic # 14 Polarization: 19.60 SS G_CDS: -5.03 Total: 14.58 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.62 -11.53 -46.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881155146.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.967 kcal (2) G-P(sol) polarization free energy of solvation -34.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.159 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds