Wall clock time and date at job start Sat Apr 11 2020 06:22:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34947 * 126.03702 * 2 1 4 4 C 1.35307 * 107.74824 * 179.97438 * 3 2 1 5 5 S 1.76198 * 126.04315 * 179.97438 * 4 3 2 6 6 O 1.42104 * 106.40578 * 228.56653 * 5 4 3 7 7 O 1.42100 * 106.40154 * 1.48130 * 5 4 3 8 8 N 1.65597 * 107.22278 * 115.02292 * 5 4 3 9 9 C 1.46504 * 119.99892 * 64.99537 * 8 5 4 10 10 C 1.52998 * 109.47078 * 165.00060 * 9 8 5 11 11 C 1.52999 * 109.47043 * 180.02562 * 10 9 8 12 12 C 1.50709 * 109.46842 * 180.02562 * 11 10 9 13 13 H 1.07994 * 119.99929 * 0.02562 * 12 11 10 14 14 C 1.37874 * 119.99708 * 180.02562 * 12 11 10 15 15 N 1.31518 * 120.00068 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 119.99977 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47270 * 89.99526 * 16 14 12 18 18 H 1.48500 * 109.47141 * 209.99756 * 16 14 12 19 19 H 1.48501 * 109.47085 * 329.99611 * 16 14 12 20 20 C 1.39874 * 107.91884 * 359.97438 * 4 3 2 21 21 C 1.50706 * 125.89775 * 179.97438 * 20 4 3 22 22 C 1.54263 * 110.03126 * 237.16880 * 21 20 4 23 23 C 1.54889 * 104.19122 * 217.10844 * 22 21 20 24 24 C 1.54883 * 102.75219 * 37.93954 * 23 22 21 25 25 C 1.53879 * 110.02906 * 119.99970 * 21 20 4 26 26 N 1.30836 * 108.20052 * 359.73989 * 20 4 3 27 27 H 1.08999 * 109.46892 * 90.00531 * 1 2 3 28 28 H 1.09000 * 109.46803 * 209.99704 * 1 2 3 29 29 H 1.09000 * 109.47214 * 330.00497 * 1 2 3 30 30 H 1.08007 * 126.12499 * 359.97438 * 3 2 1 31 31 H 0.96997 * 120.00040 * 245.00670 * 8 5 4 32 32 H 1.08994 * 109.47415 * 285.00517 * 9 8 5 33 33 H 1.09008 * 109.46825 * 45.00999 * 9 8 5 34 34 H 1.09000 * 109.47288 * 300.00907 * 10 9 8 35 35 H 1.09003 * 109.46971 * 60.00636 * 10 9 8 36 36 H 1.08994 * 109.47211 * 300.00310 * 11 10 9 37 37 H 1.08996 * 109.46878 * 60.01235 * 11 10 9 38 38 H 0.96995 * 119.99781 * 180.02562 * 15 14 12 39 39 H 1.08998 * 110.01724 * 358.60884 * 21 20 4 40 40 H 1.09000 * 110.48676 * 335.78100 * 22 21 20 41 41 H 1.08998 * 110.48882 * 98.42916 * 22 21 20 42 42 H 1.09001 * 110.75596 * 279.62369 * 23 22 21 43 43 H 1.09002 * 110.75614 * 156.26070 * 23 22 21 44 44 H 1.09000 * 110.48584 * 203.37976 * 24 23 22 45 45 H 1.09001 * 110.59879 * 80.79727 * 24 23 22 46 46 H 1.09009 * 110.02815 * 238.56886 * 25 21 20 47 47 H 1.08994 * 110.03199 * 359.94678 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5437 0.6666 0.0006 5 16 4.9751 1.6940 0.0002 6 8 5.8274 1.1945 -1.0213 7 8 4.5065 3.0351 0.0344 8 7 5.7633 1.4374 1.4338 9 6 6.3425 0.1239 1.7263 10 6 7.3130 0.2451 2.9028 11 6 7.9184 -1.1265 3.2079 12 6 8.8740 -1.0072 4.3672 13 1 9.0331 -0.0491 4.8394 14 6 9.5449 -2.1213 4.8250 15 7 9.3507 -3.2882 4.2503 16 14 10.7287 -1.9736 6.2624 17 1 9.9948 -2.1996 7.5334 18 1 11.8039 -2.9886 6.1244 19 1 11.3287 -0.6152 6.2720 20 6 3.5347 -0.7321 0.0015 21 6 4.7497 -1.6236 0.0019 22 6 4.7107 -2.5705 -1.2153 23 6 5.2896 -3.9031 -0.6784 24 6 4.7070 -3.9762 0.7548 25 6 4.7473 -2.5173 1.2545 26 7 2.2892 -1.1327 0.0072 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5137 30 1 1.9281 2.1194 -0.0004 31 1 5.8413 2.1566 2.0799 32 1 5.5466 -0.5754 1.9824 33 1 6.8781 -0.2404 0.8496 34 1 8.1089 0.9444 2.6468 35 1 6.7775 0.6094 3.7796 36 1 7.1228 -1.8261 3.4639 37 1 8.4542 -1.4903 2.3312 38 1 9.8224 -4.0720 4.5726 39 1 5.6562 -1.0188 -0.0236 40 1 3.6851 -2.7104 -1.5570 41 1 5.3327 -2.1816 -2.0214 42 1 6.3787 -3.8680 -0.6513 43 1 4.9440 -4.7443 -1.2793 44 1 5.3263 -4.6130 1.3864 45 1 3.6811 -4.3439 0.7334 46 1 5.6532 -2.3469 1.8365 47 1 3.8679 -2.3056 1.8626 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000906920749.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:10 Heat of formation + Delta-G solvation = -19.241637 kcal Electronic energy + Delta-G solvation = -29069.252579 eV Core-core repulsion = 25186.949806 eV Total energy + Delta-G solvation = -3882.302773 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.60533 -38.17046 -36.97238 -35.90519 -35.67146 -33.68727 -33.20384 -30.84005 -30.69614 -29.40444 -28.54906 -26.50864 -26.18365 -23.05909 -22.14533 -21.83433 -20.77147 -20.19125 -19.35889 -18.92527 -17.99506 -17.07046 -16.51840 -15.94164 -15.81958 -15.71312 -15.44598 -15.21368 -14.52003 -14.48687 -14.32524 -13.80146 -13.54029 -13.31861 -13.12689 -13.01313 -12.44027 -12.26504 -12.14162 -12.02569 -11.84357 -11.72137 -11.52472 -11.43712 -11.19900 -10.95139 -10.91453 -10.86625 -10.74308 -10.67594 -10.54193 -10.35579 -10.22854 -9.90088 -9.53131 -9.43736 -9.27998 -9.17527 -9.01493 -8.35332 -6.00951 -4.02990 0.61940 1.37687 2.13011 2.16188 3.30111 3.31853 3.38679 3.41931 3.80117 4.12728 4.28231 4.45635 4.53006 4.62456 4.71912 4.75230 4.81591 4.98217 5.16905 5.26981 5.28659 5.35302 5.39347 5.57104 5.63537 5.66940 5.75172 5.87422 5.91332 5.96832 6.06332 6.09105 6.14005 6.20227 6.37439 6.40463 6.46464 6.55843 6.60108 6.61750 6.78899 6.98608 7.22277 7.33193 7.64330 7.77417 7.97871 8.40291 9.03139 9.61097 11.10102 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012194 B = 0.003627 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2295.697571 B = 7717.430472 C = 8915.447307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.366 5.366 3 C 0.174 3.826 4 C -0.813 4.813 5 S 2.723 3.277 6 O -0.957 6.957 7 O -0.977 6.977 8 N -1.114 6.114 9 C 0.099 3.901 10 C -0.117 4.117 11 C 0.022 3.978 12 C -0.521 4.521 13 H 0.055 0.945 14 C 0.058 3.942 15 N -0.893 5.893 16 Si 0.891 3.109 17 H -0.281 1.281 18 H -0.287 1.287 19 H -0.274 1.274 20 C 0.176 3.824 21 C -0.044 4.044 22 C -0.112 4.112 23 C -0.124 4.124 24 C -0.120 4.120 25 C -0.123 4.123 26 N -0.286 5.286 27 H 0.080 0.920 28 H 0.094 0.906 29 H 0.092 0.908 30 H 0.192 0.808 31 H 0.417 0.583 32 H 0.071 0.929 33 H 0.079 0.921 34 H 0.058 0.942 35 H 0.055 0.945 36 H 0.020 0.980 37 H 0.021 0.979 38 H 0.260 0.740 39 H 0.106 0.894 40 H 0.068 0.932 41 H 0.073 0.927 42 H 0.075 0.925 43 H 0.065 0.935 44 H 0.072 0.928 45 H 0.061 0.939 46 H 0.092 0.908 47 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.049 5.293 -9.950 21.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.142 5.142 3 C 0.021 3.979 4 C -0.911 4.911 5 S 2.810 3.190 6 O -0.946 6.946 7 O -0.967 6.967 8 N -0.875 5.875 9 C -0.026 4.026 10 C -0.156 4.156 11 C -0.016 4.016 12 C -0.559 4.559 13 H 0.073 0.927 14 C -0.143 4.143 15 N -0.532 5.532 16 Si 0.719 3.281 17 H -0.208 1.208 18 H -0.213 1.213 19 H -0.199 1.199 20 C 0.006 3.994 21 C -0.064 4.064 22 C -0.150 4.150 23 C -0.161 4.161 24 C -0.157 4.157 25 C -0.161 4.161 26 N -0.106 5.106 27 H 0.099 0.901 28 H 0.113 0.887 29 H 0.110 0.890 30 H 0.209 0.791 31 H 0.251 0.749 32 H 0.089 0.911 33 H 0.097 0.903 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.038 0.962 37 H 0.039 0.961 38 H 0.070 0.930 39 H 0.124 0.876 40 H 0.087 0.913 41 H 0.092 0.908 42 H 0.094 0.906 43 H 0.083 0.917 44 H 0.091 0.909 45 H 0.080 0.920 46 H 0.111 0.889 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -18.810 4.470 -10.746 22.119 hybrid contribution 0.429 0.628 1.441 1.629 sum -18.381 5.098 -9.305 21.224 Atomic orbital electron populations 1.22022 0.73660 1.05112 1.03924 1.49029 1.07173 1.04108 1.53920 1.22414 0.89037 0.94188 0.92294 1.31570 1.16735 1.08767 1.33993 1.00863 0.72865 0.72309 0.72945 1.93583 1.64471 1.81385 1.55181 1.93530 1.82314 1.34072 1.86803 1.55469 1.71385 1.21623 1.38983 1.22147 0.97591 0.81984 1.00851 1.21885 0.96875 1.02208 0.94669 1.19084 0.95643 0.89900 0.96931 1.21204 1.24550 0.94541 1.15649 0.92682 1.24994 0.96952 0.95447 0.96926 1.69950 1.42765 0.99211 1.41243 0.86619 0.80856 0.77833 0.82822 1.20765 1.21254 1.19907 1.21868 0.93905 0.90558 0.93043 1.20995 0.92244 0.95607 0.97576 1.22405 1.01574 0.94677 0.96329 1.22508 1.01032 0.96511 0.96092 1.22306 1.00720 0.96363 0.96359 1.22412 1.03607 0.94263 0.95860 1.77385 1.01080 1.06516 1.25598 0.90147 0.88712 0.88957 0.79106 0.74858 0.91100 0.90309 0.92338 0.92601 0.96210 0.96076 0.93003 0.87591 0.91322 0.90844 0.90636 0.91663 0.90889 0.92044 0.88929 0.91603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.53 11.47 59.85 0.69 1.21 16 2 N -0.37 -3.95 4.01 -68.16 -0.27 -4.22 16 3 C 0.17 1.90 11.12 -17.23 -0.19 1.71 16 4 C -0.81 -11.01 6.12 -40.01 -0.24 -11.26 16 5 S 2.72 39.25 5.48 -107.50 -0.59 38.66 16 6 O -0.96 -16.42 16.47 -57.17 -0.94 -17.37 16 7 O -0.98 -14.98 17.74 -57.17 -1.01 -15.99 16 8 N -1.11 -15.48 6.00 -10.61 -0.06 -15.54 16 9 C 0.10 1.59 4.15 -4.04 -0.02 1.57 16 10 C -0.12 -2.22 5.29 -26.73 -0.14 -2.36 16 11 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 12 C -0.52 -14.16 9.11 -34.44 -0.31 -14.47 16 13 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 14 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 15 N -0.89 -25.82 13.29 55.43 0.74 -25.08 16 16 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 19 H -0.27 -6.42 7.11 56.52 0.40 -6.01 16 20 C 0.18 2.54 5.40 -82.40 -0.45 2.09 16 21 C -0.04 -0.64 2.30 -90.65 -0.21 -0.85 16 22 C -0.11 -1.48 6.35 -25.07 -0.16 -1.64 16 23 C -0.12 -1.55 6.91 -24.74 -0.17 -1.72 16 24 C -0.12 -1.60 6.83 -25.08 -0.17 -1.77 16 25 C -0.12 -1.80 5.13 -25.61 -0.13 -1.94 16 26 N -0.29 -3.97 12.32 33.67 0.41 -3.55 16 27 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 29 H 0.09 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.19 1.39 8.06 -52.48 -0.42 0.96 16 31 H 0.42 4.98 8.65 -34.47 -0.30 4.68 16 32 H 0.07 1.10 4.28 -51.93 -0.22 0.88 16 33 H 0.08 1.30 6.20 -51.92 -0.32 0.97 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 36 H 0.02 0.49 7.59 -51.93 -0.39 0.10 16 37 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 39 H 0.11 1.61 3.32 -51.93 -0.17 1.44 16 40 H 0.07 0.90 7.66 -51.93 -0.40 0.51 16 41 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 42 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 45 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.09 1.49 6.10 -51.92 -0.32 1.17 16 47 H 0.07 0.96 7.66 -51.93 -0.40 0.57 16 LS Contribution 381.91 15.07 5.76 5.76 Total: -1.00 -34.75 381.91 -9.88 -44.63 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -7.14 Total: 4.03 kcal Atomic # 6 Polarization: -25.76 SS G_CDS: -1.74 Total: -27.50 kcal Atomic # 7 Polarization: -49.21 SS G_CDS: 0.81 Total: -48.40 kcal Atomic # 8 Polarization: -31.40 SS G_CDS: -1.96 Total: -33.36 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: 39.25 SS G_CDS: -0.59 Total: 38.66 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.75 -9.88 -44.63 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906920749.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.387 kcal (2) G-P(sol) polarization free energy of solvation -34.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.629 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds