Wall clock time and date at job start Sat Apr 11 2020 06:22:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34947 * 126.03702 * 2 1 4 4 C 1.35307 * 107.74824 * 179.97438 * 3 2 1 5 5 S 1.76198 * 126.04315 * 179.97438 * 4 3 2 6 6 O 1.42104 * 106.40578 * 228.56653 * 5 4 3 7 7 O 1.42100 * 106.40154 * 1.48130 * 5 4 3 8 8 N 1.65597 * 107.22278 * 115.02292 * 5 4 3 9 9 C 1.46504 * 119.99892 * 64.99537 * 8 5 4 10 10 C 1.52998 * 109.47078 * 165.00060 * 9 8 5 11 11 C 1.52999 * 109.47043 * 180.02562 * 10 9 8 12 12 C 1.50709 * 109.46842 * 180.02562 * 11 10 9 13 13 H 1.07994 * 119.99929 * 0.02562 * 12 11 10 14 14 C 1.37874 * 119.99708 * 180.02562 * 12 11 10 15 15 N 1.31518 * 120.00068 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 119.99977 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47270 * 89.99526 * 16 14 12 18 18 H 1.48500 * 109.47141 * 209.99756 * 16 14 12 19 19 H 1.48501 * 109.47085 * 329.99611 * 16 14 12 20 20 C 1.39874 * 107.91884 * 359.97438 * 4 3 2 21 21 C 1.50706 * 125.89775 * 179.97438 * 20 4 3 22 22 C 1.54263 * 110.03126 * 237.16880 * 21 20 4 23 23 C 1.54889 * 104.19122 * 217.10844 * 22 21 20 24 24 C 1.54883 * 102.75219 * 37.93954 * 23 22 21 25 25 C 1.53879 * 110.02906 * 119.99970 * 21 20 4 26 26 N 1.30836 * 108.20052 * 359.73989 * 20 4 3 27 27 H 1.08999 * 109.46892 * 90.00531 * 1 2 3 28 28 H 1.09000 * 109.46803 * 209.99704 * 1 2 3 29 29 H 1.09000 * 109.47214 * 330.00497 * 1 2 3 30 30 H 1.08007 * 126.12499 * 359.97438 * 3 2 1 31 31 H 0.96997 * 120.00040 * 245.00670 * 8 5 4 32 32 H 1.08994 * 109.47415 * 285.00517 * 9 8 5 33 33 H 1.09008 * 109.46825 * 45.00999 * 9 8 5 34 34 H 1.09000 * 109.47288 * 300.00907 * 10 9 8 35 35 H 1.09003 * 109.46971 * 60.00636 * 10 9 8 36 36 H 1.08994 * 109.47211 * 300.00310 * 11 10 9 37 37 H 1.08996 * 109.46878 * 60.01235 * 11 10 9 38 38 H 0.96995 * 119.99781 * 180.02562 * 15 14 12 39 39 H 1.08998 * 110.01724 * 358.60884 * 21 20 4 40 40 H 1.09000 * 110.48676 * 335.78100 * 22 21 20 41 41 H 1.08998 * 110.48882 * 98.42916 * 22 21 20 42 42 H 1.09001 * 110.75596 * 279.62369 * 23 22 21 43 43 H 1.09002 * 110.75614 * 156.26070 * 23 22 21 44 44 H 1.09000 * 110.48584 * 203.37976 * 24 23 22 45 45 H 1.09001 * 110.59879 * 80.79727 * 24 23 22 46 46 H 1.09009 * 110.02815 * 238.56886 * 25 21 20 47 47 H 1.08994 * 110.03199 * 359.94678 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5437 0.6666 0.0006 5 16 4.9751 1.6940 0.0002 6 8 5.8274 1.1945 -1.0213 7 8 4.5065 3.0351 0.0344 8 7 5.7633 1.4374 1.4338 9 6 6.3425 0.1239 1.7263 10 6 7.3130 0.2451 2.9028 11 6 7.9184 -1.1265 3.2079 12 6 8.8740 -1.0072 4.3672 13 1 9.0331 -0.0491 4.8394 14 6 9.5449 -2.1213 4.8250 15 7 9.3507 -3.2882 4.2503 16 14 10.7287 -1.9736 6.2624 17 1 9.9948 -2.1996 7.5334 18 1 11.8039 -2.9886 6.1244 19 1 11.3287 -0.6152 6.2720 20 6 3.5347 -0.7321 0.0015 21 6 4.7497 -1.6236 0.0019 22 6 4.7107 -2.5705 -1.2153 23 6 5.2896 -3.9031 -0.6784 24 6 4.7070 -3.9762 0.7548 25 6 4.7473 -2.5173 1.2545 26 7 2.2892 -1.1327 0.0072 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5137 30 1 1.9281 2.1194 -0.0004 31 1 5.8413 2.1566 2.0799 32 1 5.5466 -0.5754 1.9824 33 1 6.8781 -0.2404 0.8496 34 1 8.1089 0.9444 2.6468 35 1 6.7775 0.6094 3.7796 36 1 7.1228 -1.8261 3.4639 37 1 8.4542 -1.4903 2.3312 38 1 9.8224 -4.0720 4.5726 39 1 5.6562 -1.0188 -0.0236 40 1 3.6851 -2.7104 -1.5570 41 1 5.3327 -2.1816 -2.0214 42 1 6.3787 -3.8680 -0.6513 43 1 4.9440 -4.7443 -1.2793 44 1 5.3263 -4.6130 1.3864 45 1 3.6811 -4.3439 0.7334 46 1 5.6532 -2.3469 1.8365 47 1 3.8679 -2.3056 1.8626 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000906920749.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:09 Heat of formation + Delta-G solvation = -43.605150 kcal Electronic energy + Delta-G solvation = -29070.309060 eV Core-core repulsion = 25186.949806 eV Total energy + Delta-G solvation = -3883.359254 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.156 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.52651 -39.27090 -38.17243 -37.30886 -36.90370 -35.13118 -34.47646 -32.59470 -31.62626 -30.35809 -29.66888 -28.14989 -27.11565 -24.77655 -23.15666 -22.84550 -22.20310 -21.41317 -20.44272 -20.04218 -19.01474 -18.50545 -18.19596 -17.14417 -16.89082 -16.68168 -16.43870 -16.40107 -16.24956 -15.89755 -15.59809 -14.72527 -14.58485 -14.28636 -14.21823 -13.91824 -13.89013 -13.72546 -13.63120 -13.24790 -13.15677 -13.10192 -12.78311 -12.73940 -12.48142 -12.46013 -12.35873 -12.18978 -12.00745 -11.94760 -11.79352 -11.61081 -11.48438 -11.40528 -11.28180 -11.06461 -10.50881 -10.47888 -10.34144 -10.17036 -8.13158 -6.22453 -0.50904 0.52129 1.09786 1.41313 1.44038 1.44805 1.55339 2.16378 2.46051 2.71884 3.17922 3.20593 3.33670 3.62878 3.71808 3.78496 3.84887 4.05583 4.16525 4.22368 4.33318 4.37377 4.41079 4.50499 4.54258 4.58419 4.60529 4.64988 4.70344 4.82877 4.85019 4.95902 5.01100 5.06896 5.14447 5.21858 5.24805 5.29228 5.31219 5.36615 5.50239 5.60395 5.82218 5.83108 5.93030 6.12911 6.32265 6.38085 6.93775 7.45786 8.97962 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.012194 B = 0.003627 C = 0.003140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2295.697571 B = 7717.430472 C = 8915.447307 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.360 5.360 3 C 0.186 3.814 4 C -0.835 4.835 5 S 2.742 3.258 6 O -0.989 6.989 7 O -0.984 6.984 8 N -1.109 6.109 9 C 0.110 3.890 10 C -0.107 4.107 11 C 0.026 3.974 12 C -0.541 4.541 13 H 0.059 0.941 14 C 0.004 3.996 15 N -0.927 5.927 16 Si 0.957 3.043 17 H -0.274 1.274 18 H -0.285 1.285 19 H -0.265 1.265 20 C 0.162 3.838 21 C -0.048 4.048 22 C -0.109 4.109 23 C -0.120 4.120 24 C -0.119 4.119 25 C -0.120 4.120 26 N -0.308 5.308 27 H 0.098 0.902 28 H 0.096 0.904 29 H 0.126 0.874 30 H 0.231 0.769 31 H 0.427 0.573 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.060 0.940 35 H 0.066 0.934 36 H 0.004 0.996 37 H -0.003 1.003 38 H 0.262 0.738 39 H 0.094 0.906 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.066 0.934 43 H 0.085 0.915 44 H 0.064 0.936 45 H 0.072 0.928 46 H 0.070 0.930 47 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.817 6.540 -9.681 23.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.136 5.136 3 C 0.030 3.970 4 C -0.935 4.935 5 S 2.831 3.169 6 O -0.978 6.978 7 O -0.974 6.974 8 N -0.870 5.870 9 C -0.015 4.015 10 C -0.146 4.146 11 C -0.012 4.012 12 C -0.579 4.579 13 H 0.078 0.922 14 C -0.195 4.195 15 N -0.567 5.567 16 Si 0.783 3.217 17 H -0.200 1.200 18 H -0.211 1.211 19 H -0.190 1.190 20 C -0.007 4.007 21 C -0.068 4.068 22 C -0.147 4.147 23 C -0.158 4.158 24 C -0.156 4.156 25 C -0.158 4.158 26 N -0.128 5.128 27 H 0.116 0.884 28 H 0.115 0.885 29 H 0.144 0.856 30 H 0.247 0.753 31 H 0.263 0.737 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.022 0.978 37 H 0.015 0.985 38 H 0.071 0.929 39 H 0.112 0.888 40 H 0.090 0.910 41 H 0.092 0.908 42 H 0.085 0.915 43 H 0.104 0.896 44 H 0.082 0.918 45 H 0.091 0.909 46 H 0.089 0.911 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -20.578 5.744 -10.469 23.792 hybrid contribution 0.846 0.251 1.337 1.602 sum -19.732 5.995 -9.133 22.555 Atomic orbital electron populations 1.22503 0.70632 1.06938 1.05677 1.49399 1.08742 1.03199 1.52219 1.22985 0.88062 0.95726 0.90179 1.31353 1.17396 1.08229 1.36559 1.00061 0.72710 0.71935 0.72204 1.93543 1.65941 1.81885 1.56476 1.93513 1.82422 1.34615 1.86840 1.55267 1.71541 1.21011 1.39208 1.21868 0.97168 0.83145 0.99341 1.21671 0.97476 0.99108 0.96316 1.18961 0.94710 0.92399 0.95150 1.21674 1.25045 0.94767 1.16435 0.92249 1.25861 0.98762 0.95161 0.99673 1.70078 1.43885 0.99926 1.42803 0.85566 0.78591 0.78071 0.79514 1.19982 1.21056 1.18984 1.21784 0.94016 0.90917 0.93947 1.20941 0.92352 0.95780 0.97746 1.22390 1.01741 0.94669 0.95919 1.22500 1.00476 0.97025 0.95786 1.22299 1.01257 0.95360 0.96693 1.22323 1.02225 0.95350 0.95905 1.77296 1.01115 1.08393 1.25998 0.88390 0.88542 0.85569 0.75316 0.73687 0.90549 0.91054 0.92146 0.91513 0.97790 0.98451 0.92930 0.88820 0.91005 0.90839 0.91498 0.89613 0.91754 0.90927 0.91146 0.91887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.63 11.47 127.77 1.47 2.10 16 2 N -0.36 -6.81 4.01 -369.55 -1.48 -8.29 16 3 C 0.19 3.54 11.12 83.54 0.93 4.47 16 4 C -0.83 -21.62 6.12 21.99 0.13 -21.49 16 5 S 2.74 77.28 5.48 -56.49 -0.31 76.97 16 6 O -0.99 -34.27 16.47 -128.00 -2.11 -36.38 16 7 O -0.98 -28.58 17.74 -128.00 -2.27 -30.85 16 8 N -1.11 -30.35 6.00 -187.48 -1.12 -31.48 16 9 C 0.11 3.62 4.15 86.38 0.36 3.98 16 10 C -0.11 -4.09 5.29 30.59 0.16 -3.93 16 11 C 0.03 1.28 4.97 29.85 0.15 1.43 16 12 C -0.54 -29.77 9.11 25.60 0.23 -29.53 16 13 H 0.06 3.14 7.74 -2.91 -0.02 3.11 16 14 C 0.00 0.20 5.46 84.65 0.46 0.66 16 15 N -0.93 -54.78 13.29 21.45 0.28 -54.49 16 16 Si 0.96 43.57 29.54 68.60 2.03 45.59 16 17 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 18 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 19 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 20 C 0.16 4.62 5.40 43.11 0.23 4.85 16 21 C -0.05 -1.43 2.30 -10.81 -0.02 -1.45 16 22 C -0.11 -2.92 6.35 31.67 0.20 -2.71 16 23 C -0.12 -3.04 6.91 31.88 0.22 -2.82 16 24 C -0.12 -3.23 6.83 31.66 0.22 -3.02 16 25 C -0.12 -3.64 5.13 31.32 0.16 -3.48 16 26 N -0.31 -8.15 12.32 -47.38 -0.58 -8.73 16 27 H 0.10 0.48 8.14 -2.39 -0.02 0.46 16 28 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 29 H 0.13 0.16 8.14 -2.39 -0.02 0.14 16 30 H 0.23 2.37 8.06 -2.91 -0.02 2.35 16 31 H 0.43 9.76 8.65 -96.75 -0.84 8.92 16 32 H 0.08 2.45 4.28 -2.39 -0.01 2.44 16 33 H 0.07 2.46 6.20 -2.38 -0.01 2.45 16 34 H 0.06 2.27 8.14 -2.39 -0.02 2.26 16 35 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 36 H 0.00 0.20 7.59 -2.39 -0.02 0.18 16 37 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 38 H 0.26 14.64 8.31 -92.71 -0.77 13.87 16 39 H 0.09 2.98 3.32 -2.39 -0.01 2.97 16 40 H 0.07 1.86 7.66 -2.39 -0.02 1.84 16 41 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 42 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 44 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 45 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 46 H 0.07 2.42 6.10 -2.38 -0.01 2.41 16 47 H 0.06 1.90 7.66 -2.39 -0.02 1.88 16 Total: -1.00 -75.17 381.91 -0.52 -75.69 By element: Atomic # 1 Polarization: 22.76 SS G_CDS: 0.15 Total: 22.91 kcal Atomic # 6 Polarization: -55.84 SS G_CDS: 4.90 Total: -50.94 kcal Atomic # 7 Polarization: -100.09 SS G_CDS: -2.91 Total: -103.00 kcal Atomic # 8 Polarization: -62.85 SS G_CDS: -4.38 Total: -67.23 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.59 kcal Atomic # 16 Polarization: 77.28 SS G_CDS: -0.31 Total: 76.97 kcal Total: -75.17 -0.52 -75.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000906920749.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.087 kcal (2) G-P(sol) polarization free energy of solvation -75.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.692 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds