Wall clock time and date at job start Sat Apr 11 2020 06:22:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46491 * 1 3 3 N 1.40089 * 126.04125 * 2 1 4 4 C 1.30843 * 108.20439 * 180.02562 * 3 2 1 5 5 C 1.50702 * 125.89522 * 179.97438 * 4 3 2 6 6 N 1.46500 * 109.47105 * 275.02693 * 5 4 3 7 7 C 1.34776 * 119.99935 * 180.02562 * 6 5 4 8 8 O 1.21586 * 119.99727 * 359.97438 * 7 6 5 9 9 N 1.34771 * 119.99985 * 179.97438 * 7 6 5 10 10 C 1.39467 * 119.99900 * 185.06073 * 9 7 6 11 11 C 1.38638 * 119.64774 * 185.36133 * 10 9 7 12 12 C 1.40826 * 118.67723 * 179.74795 * 11 10 9 13 13 C 1.41538 * 120.99778 * 180.23134 * 12 11 10 14 14 H 1.07999 * 119.99845 * 153.81888 * 13 12 11 15 15 C 1.40030 * 120.00314 * 333.81295 * 13 12 11 16 16 N 1.30746 * 119.99649 * 350.11466 * 15 13 12 17 17 Si 1.86801 * 120.00112 * 170.11842 * 15 13 12 18 18 H 1.48497 * 109.47179 * 90.00317 * 17 15 13 19 19 H 1.48500 * 109.46733 * 210.00043 * 17 15 13 20 20 H 1.48494 * 109.47000 * 329.99994 * 17 15 13 21 21 C 1.41165 * 118.00055 * 0.24366 * 12 11 10 22 22 C 1.36593 * 119.12717 * 0.02562 * 21 12 11 23 23 N 1.32066 * 121.26178 * 0.02562 * 22 21 12 24 24 C 1.39872 * 108.20305 * 0.24361 * 4 3 2 25 25 C 1.34955 * 126.03404 * 180.02562 * 2 1 3 26 26 C 1.50696 * 126.12526 * 359.97438 * 25 2 1 27 27 C 1.53009 * 117.49631 * 213.74950 * 26 25 2 28 28 C 1.53001 * 117.49732 * 145.09394 * 26 25 2 29 29 H 1.09006 * 109.47136 * 89.97152 * 1 2 3 30 30 H 1.08996 * 109.47573 * 209.97409 * 1 2 3 31 31 H 1.09003 * 109.46999 * 329.98084 * 1 2 3 32 32 H 1.08993 * 109.46686 * 155.02601 * 5 4 3 33 33 H 1.08999 * 109.46756 * 35.02304 * 5 4 3 34 34 H 0.97001 * 120.00282 * 359.97438 * 6 5 4 35 35 H 0.96995 * 120.00617 * 5.05932 * 9 7 6 36 36 H 1.08006 * 120.66544 * 0.02562 * 11 10 9 37 37 H 0.97000 * 119.99682 * 179.97438 * 16 15 13 38 38 H 1.07993 * 120.43150 * 179.97438 * 21 12 11 39 39 H 1.07997 * 119.36607 * 179.97438 * 22 21 12 40 40 H 1.07998 * 126.03831 * 179.72086 * 24 4 3 41 41 H 1.08992 * 115.55141 * 359.41980 * 26 25 2 42 42 H 1.08995 * 117.49843 * 0.02562 * 27 26 25 43 43 H 1.09000 * 117.49648 * 145.02152 * 27 26 25 44 44 H 1.09005 * 117.49928 * 214.97875 * 28 26 25 45 45 H 1.09005 * 117.50027 * 359.97219 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 7 2.2892 1.1328 0.0000 4 6 3.5347 0.7320 -0.0006 5 6 4.7497 1.6235 -0.0013 6 7 5.0712 2.0097 -1.3774 7 6 6.1269 2.8105 -1.6235 8 8 6.8123 3.2127 -0.7032 9 7 6.4230 3.1654 -2.8895 10 6 7.5746 3.9060 -3.1549 11 6 7.8149 4.3625 -4.4417 12 6 8.9813 5.1129 -4.6857 13 6 9.2727 5.6073 -5.9795 14 1 9.8857 6.4889 -6.0953 15 6 8.7663 4.9533 -7.1094 16 7 8.1909 3.7858 -6.9859 17 14 8.9130 5.7488 -8.7932 18 1 10.1880 5.3302 -9.4291 19 1 7.7725 5.3223 -9.6432 20 1 8.8951 7.2263 -8.6458 21 6 9.8513 5.3571 -3.6011 22 6 9.5330 4.8612 -2.3688 23 7 8.4305 4.1601 -2.1760 24 6 3.5436 -0.6667 -0.0066 25 6 2.2588 -1.0913 -0.0005 26 6 1.7971 -2.5258 -0.0006 27 6 2.6552 -3.5442 0.7530 28 6 2.6399 -3.5391 -0.7777 29 1 -0.3634 0.0005 -1.0277 30 1 -0.3634 -0.8902 0.5134 31 1 -0.3633 0.8898 0.5141 32 1 5.5939 1.0873 0.4322 33 1 4.5451 2.5170 0.5884 34 1 4.5246 1.6885 -2.1116 35 1 5.8352 2.9058 -3.6160 36 1 7.1192 4.1508 -5.2402 37 1 7.8398 3.3329 -7.7685 38 1 10.7570 5.9277 -3.7440 39 1 10.1960 5.0453 -1.5364 40 1 4.4210 -1.2965 -0.0127 41 1 0.7171 -2.6721 0.0097 42 1 3.5533 -3.1764 1.2491 43 1 2.1396 -4.3606 1.2587 44 1 2.1143 -4.3523 -1.2784 45 1 3.5280 -3.1681 -1.2893 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932162308.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:15 Heat of formation + Delta-G solvation = 119.655655 kcal Electronic energy + Delta-G solvation = -27753.981480 eV Core-core repulsion = 23774.550545 eV Total energy + Delta-G solvation = -3979.430935 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.66200 -39.67214 -38.00168 -37.49633 -35.10548 -34.16830 -33.65158 -33.02053 -30.45561 -30.14431 -29.03096 -27.72096 -25.95360 -25.30205 -23.83745 -22.83902 -21.95276 -21.62396 -20.36436 -19.99447 -19.55685 -18.08772 -17.59889 -17.25625 -16.08783 -15.77343 -15.50239 -15.28701 -15.16982 -14.66459 -14.58983 -14.25568 -14.13086 -14.05606 -13.48114 -13.18867 -13.12716 -12.92812 -12.77076 -12.56918 -12.54146 -12.20433 -12.00680 -11.87281 -11.41463 -11.39066 -11.14993 -11.13704 -10.86398 -10.69177 -10.24997 -10.08638 -9.69137 -9.61954 -9.34338 -9.26642 -8.74097 -8.70542 -7.91582 -7.66019 -6.96467 -6.69310 -4.57953 1.46563 2.15343 2.29197 2.75346 2.85396 3.03720 3.08545 3.28889 3.33176 3.50221 3.88442 3.94477 3.95836 4.14921 4.38273 4.46408 4.50220 4.67743 4.70794 4.76969 4.80246 5.04414 5.16547 5.19206 5.21331 5.45762 5.50384 5.66191 5.70205 5.71229 5.76045 5.99513 6.02428 6.36557 6.60027 6.67639 6.70190 6.74170 6.85953 7.00463 7.19074 7.35845 7.47360 7.49334 7.55436 7.92595 8.17114 8.46151 8.51958 8.78322 8.81032 9.24989 9.79079 10.14004 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014945 B = 0.002048 C = 0.001933 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1873.102628 B =13666.266595 C =14485.436783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.100 3.900 2 N -0.370 5.370 3 N -0.275 5.275 4 C 0.064 3.936 5 C 0.226 3.774 6 N -0.748 5.748 7 C 0.695 3.305 8 O -0.534 6.534 9 N -0.667 5.667 10 C 0.355 3.645 11 C -0.243 4.243 12 C 0.143 3.857 13 C -0.454 4.454 14 H 0.081 0.919 15 C 0.075 3.925 16 N -0.796 5.796 17 Si 0.914 3.086 18 H -0.269 1.269 19 H -0.276 1.276 20 H -0.261 1.261 21 C -0.283 4.283 22 C 0.119 3.881 23 N -0.552 5.552 24 C -0.254 4.254 25 C 0.116 3.884 26 C -0.109 4.109 27 C -0.160 4.160 28 C -0.159 4.159 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.393 0.607 35 H 0.404 0.596 36 H 0.132 0.868 37 H 0.280 0.720 38 H 0.101 0.899 39 H 0.122 0.878 40 H 0.148 0.852 41 H 0.114 0.886 42 H 0.103 0.897 43 H 0.102 0.898 44 H 0.102 0.898 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.794 -15.002 8.800 24.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.152 5.152 3 N -0.098 5.098 4 C -0.102 4.102 5 C 0.100 3.900 6 N -0.407 5.407 7 C 0.395 3.605 8 O -0.405 6.405 9 N -0.315 5.315 10 C 0.129 3.871 11 C -0.269 4.269 12 C 0.134 3.866 13 C -0.485 4.485 14 H 0.099 0.901 15 C -0.143 4.143 16 N -0.422 5.422 17 Si 0.738 3.262 18 H -0.194 1.194 19 H -0.201 1.201 20 H -0.185 1.185 21 C -0.307 4.307 22 C -0.035 4.035 23 N -0.271 5.271 24 C -0.284 4.284 25 C -0.011 4.011 26 C -0.129 4.129 27 C -0.197 4.197 28 C -0.196 4.196 29 H 0.094 0.906 30 H 0.104 0.896 31 H 0.109 0.891 32 H 0.104 0.896 33 H 0.097 0.903 34 H 0.226 0.774 35 H 0.239 0.761 36 H 0.150 0.850 37 H 0.091 0.909 38 H 0.119 0.881 39 H 0.140 0.860 40 H 0.166 0.834 41 H 0.132 0.868 42 H 0.122 0.878 43 H 0.120 0.880 44 H 0.120 0.880 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -17.422 -14.135 10.446 24.747 hybrid contribution -0.028 -0.480 -2.455 2.502 sum -17.450 -14.615 7.991 24.124 Atomic orbital electron populations 1.21851 0.74384 1.04425 1.03461 1.48399 1.06454 1.03172 1.57185 1.77441 1.01291 1.07023 1.24002 1.22250 0.93145 0.93900 1.00931 1.19231 0.90705 0.96413 0.83633 1.45100 1.32579 1.54670 1.08373 1.15997 0.80937 0.79682 0.83930 1.91009 1.50469 1.56666 1.42376 1.42538 1.25286 1.56328 1.07350 1.17968 0.86170 0.92548 0.90405 1.21620 1.01527 1.09755 0.93953 1.17581 0.88560 0.87911 0.92541 1.19564 1.27969 1.11240 0.89760 0.90103 1.25945 0.92720 0.93968 1.01666 1.69753 1.28652 1.11583 1.32198 0.86220 0.78667 0.80642 0.80650 1.19433 1.20129 1.18463 1.21681 1.02170 1.11682 0.95142 1.21472 0.92756 0.94019 0.95254 1.67179 1.05231 1.21521 1.33149 1.21065 0.96267 0.94269 1.16775 1.20123 0.90781 0.88638 1.01574 1.20423 0.98203 0.85622 1.08612 1.23104 1.01832 0.99930 0.94869 1.23111 1.01996 0.99970 0.94562 0.90640 0.89624 0.89110 0.89600 0.90287 0.77432 0.76138 0.85002 0.90908 0.88053 0.86020 0.83402 0.86786 0.87821 0.88008 0.87970 0.87762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.60 11.22 59.84 0.67 1.27 16 2 N -0.37 -3.81 4.01 -63.89 -0.26 -4.07 16 3 N -0.28 -3.64 12.58 33.67 0.42 -3.21 16 4 C 0.06 0.81 6.59 -82.40 -0.54 0.27 16 5 C 0.23 3.15 6.23 -5.19 -0.03 3.12 16 6 N -0.75 -11.43 5.55 -66.42 -0.37 -11.80 16 7 C 0.70 14.08 8.51 -86.92 -0.74 13.34 16 8 O -0.53 -13.03 14.64 5.29 0.08 -12.95 16 9 N -0.67 -13.78 5.40 -15.86 -0.09 -13.87 16 10 C 0.36 8.91 7.41 -154.67 -1.15 7.76 16 11 C -0.24 -6.30 8.62 -38.46 -0.33 -6.63 16 12 C 0.14 3.82 5.60 -106.55 -0.60 3.22 16 13 C -0.45 -11.82 9.14 -37.65 -0.34 -12.17 16 14 H 0.08 2.01 7.87 -52.49 -0.41 1.60 16 15 C 0.07 1.83 5.31 -17.34 -0.09 1.73 16 16 N -0.80 -19.80 10.70 55.55 0.59 -19.20 16 17 Si 0.91 18.20 29.57 -169.99 -5.03 13.17 16 18 H -0.27 -5.31 7.11 56.52 0.40 -4.91 16 19 H -0.28 -5.36 7.11 56.52 0.40 -4.96 16 20 H -0.26 -5.17 7.11 56.52 0.40 -4.77 16 21 C -0.28 -7.08 9.85 -39.07 -0.38 -7.47 16 22 C 0.12 2.94 11.10 -18.05 -0.20 2.74 16 23 N -0.55 -14.57 7.90 -12.76 -0.10 -14.67 16 24 C -0.25 -2.76 9.74 -40.01 -0.39 -3.15 16 25 C 0.12 1.11 6.62 -82.26 -0.54 0.56 16 26 C -0.11 -0.70 5.97 -91.77 -0.55 -1.24 16 27 C -0.16 -0.86 10.05 -26.69 -0.27 -1.13 16 28 C -0.16 -0.89 10.05 -26.69 -0.27 -1.16 16 29 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.09 0.29 7.22 -51.93 -0.37 -0.08 16 31 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 34 H 0.39 5.16 8.48 -40.82 -0.35 4.81 16 35 H 0.40 6.95 8.71 -40.82 -0.36 6.60 16 36 H 0.13 3.40 6.11 -52.48 -0.32 3.08 16 37 H 0.28 6.31 8.29 -40.82 -0.34 5.98 16 38 H 0.10 2.32 8.06 -52.49 -0.42 1.90 16 39 H 0.12 2.63 8.06 -52.49 -0.42 2.21 16 40 H 0.15 1.41 8.06 -52.49 -0.42 0.98 16 41 H 0.11 0.53 7.24 -51.93 -0.38 0.15 16 42 H 0.10 0.62 7.94 -51.93 -0.41 0.20 16 43 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 44 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.10 0.67 7.95 -51.93 -0.41 0.26 16 LS Contribution 386.51 15.07 5.82 5.82 Total: -1.00 -34.51 386.51 -10.63 -45.14 By element: Atomic # 1 Polarization: 20.53 SS G_CDS: -5.95 Total: 14.57 kcal Atomic # 6 Polarization: 6.82 SS G_CDS: -5.76 Total: 1.06 kcal Atomic # 7 Polarization: -67.03 SS G_CDS: 0.21 Total: -66.82 kcal Atomic # 8 Polarization: -13.03 SS G_CDS: 0.08 Total: -12.95 kcal Atomic # 14 Polarization: 18.20 SS G_CDS: -5.03 Total: 13.17 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -34.51 -10.63 -45.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932162308.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.792 kcal (2) G-P(sol) polarization free energy of solvation -34.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds