Wall clock time and date at job start Sat Apr 11 2020 06:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.40088 * 126.03597 * 2 1 4 4 C 1.30833 * 108.20595 * 180.23487 * 3 2 1 5 5 C 1.39874 * 108.20077 * 359.77685 * 4 3 2 6 6 C 1.34947 * 126.03824 * 179.84422 * 2 1 3 7 7 C 1.50697 * 126.12380 * 0.03837 * 6 2 1 8 8 H 1.08990 * 110.00231 * 25.07071 * 7 6 2 9 9 C 1.54319 * 109.88048 * 263.97078 * 7 6 2 10 10 C 1.55156 * 102.94574 * 218.39321 * 9 7 6 11 11 C 1.54697 * 101.67587 * 35.33581 * 10 9 7 12 12 N 1.47030 * 109.87980 * 146.16642 * 7 6 2 13 13 C 1.34771 * 125.64677 * 298.31826 * 12 7 6 14 14 O 1.21581 * 120.00143 * 0.02562 * 13 12 7 15 15 N 1.34776 * 119.99887 * 179.97438 * 13 12 7 16 16 C 1.39456 * 119.99991 * 185.01356 * 15 13 12 17 17 C 1.38653 * 119.64686 * 174.61570 * 16 15 13 18 18 C 1.40818 * 118.67103 * 179.97438 * 17 16 15 19 19 C 1.41549 * 120.99524 * 180.02562 * 18 17 16 20 20 H 1.07995 * 120.00028 * 151.70977 * 19 18 17 21 21 C 1.40031 * 119.99584 * 331.70828 * 19 18 17 22 22 N 1.30743 * 120.00503 * 350.15581 * 21 19 18 23 23 Si 1.86807 * 119.99894 * 170.15553 * 21 19 18 24 24 H 1.48491 * 109.47027 * 90.00116 * 23 21 19 25 25 H 1.48500 * 109.47295 * 210.00223 * 23 21 19 26 26 H 1.48500 * 109.46643 * 330.00169 * 23 21 19 27 27 C 1.41158 * 118.00704 * 0.02562 * 18 17 16 28 28 C 1.36583 * 119.12931 * 359.97438 * 27 18 17 29 29 N 1.32069 * 121.25946 * 0.02562 * 28 27 18 30 30 H 1.09003 * 109.47253 * 270.15044 * 1 2 3 31 31 H 1.09004 * 109.47334 * 30.15365 * 1 2 3 32 32 H 1.08998 * 109.47119 * 150.15454 * 1 2 3 33 33 H 1.08002 * 125.90060 * 179.74695 * 4 3 2 34 34 H 1.07999 * 126.04025 * 180.02562 * 5 4 3 35 35 H 1.08997 * 110.72428 * 336.75648 * 9 7 6 36 36 H 1.09005 * 110.72232 * 100.03015 * 9 7 6 37 37 H 1.09002 * 111.01186 * 153.57726 * 10 9 7 38 38 H 1.09005 * 111.00267 * 277.39373 * 10 9 7 39 39 H 1.09002 * 110.39222 * 204.36591 * 11 10 9 40 40 H 1.09004 * 110.23282 * 82.11473 * 11 10 9 41 41 H 0.97005 * 119.99948 * 5.02117 * 15 13 12 42 42 H 1.07998 * 120.66042 * 0.02562 * 17 16 15 43 43 H 0.96998 * 120.00162 * 179.97438 * 22 21 19 44 44 H 1.08007 * 120.43397 * 180.27518 * 27 18 17 45 45 H 1.08010 * 119.37265 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1328 0.0000 4 6 3.5346 0.7322 -0.0051 5 6 3.5437 -0.6665 -0.0033 6 6 2.2589 -1.0912 0.0030 7 6 1.7973 -2.5257 0.0061 8 1 0.8003 -2.5975 -0.4283 9 6 1.7809 -3.0686 1.4505 10 6 2.2848 -4.5261 1.2798 11 6 3.3175 -4.3687 0.1389 12 7 2.7379 -3.3553 -0.7614 13 6 3.0192 -3.2160 -2.0720 14 8 2.4751 -2.3437 -2.7212 15 7 3.9044 -4.0429 -2.6629 16 6 4.2743 -3.8342 -3.9912 17 6 5.2672 -4.6187 -4.5579 18 6 5.6242 -4.3908 -5.9009 19 6 6.6308 -5.1630 -6.5287 20 1 6.6003 -5.3247 -7.5960 21 6 7.6660 -5.7172 -5.7657 22 7 7.8151 -5.3683 -4.5146 23 14 8.8340 -6.9553 -6.5356 24 1 9.9908 -6.2401 -7.1315 25 1 9.3170 -7.8952 -5.4924 26 1 8.1223 -7.7147 -7.5949 27 6 4.9483 -3.3691 -6.6022 28 6 3.9830 -2.6478 -5.9592 29 7 3.6734 -2.8886 -4.6981 30 1 -0.3634 0.0027 1.0277 31 1 -0.3634 0.8886 -0.5162 32 1 -0.3633 -0.8913 -0.5114 33 1 4.4053 1.3711 -0.0103 34 1 4.4210 -1.2962 -0.0061 35 1 2.4592 -2.4980 2.0848 36 1 0.7691 -3.0554 1.8560 37 1 2.7602 -4.8847 2.1928 38 1 1.4723 -5.1877 0.9791 39 1 3.4483 -5.3139 -0.3881 40 1 4.2703 -4.0210 0.5381 41 1 4.2840 -4.7833 -2.1642 42 1 5.7564 -5.3897 -3.9811 43 1 8.5319 -5.7525 -3.9860 44 1 5.1878 -3.1638 -7.6352 45 1 3.4630 -1.8654 -6.4922 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932163489.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:18 Heat of formation + Delta-G solvation = 106.525561 kcal Electronic energy + Delta-G solvation = -29694.964815 eV Core-core repulsion = 25714.964517 eV Total energy + Delta-G solvation = -3980.000298 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.31790 -39.92614 -38.48539 -37.05652 -34.29498 -33.76272 -33.22977 -31.54232 -31.17958 -30.45355 -28.38664 -27.83171 -26.64741 -25.97140 -23.92537 -21.91858 -21.72818 -21.61346 -20.91549 -20.05985 -18.96559 -17.92087 -17.60107 -17.16930 -15.96920 -15.60270 -15.38587 -15.13831 -14.79603 -14.48034 -14.34522 -14.17916 -13.91056 -13.55873 -13.53175 -13.17473 -12.97005 -12.80151 -12.65784 -12.61623 -12.44364 -12.32037 -12.02305 -11.79415 -11.52748 -11.43444 -11.17831 -11.04232 -10.88588 -10.53535 -10.28034 -10.12457 -9.74973 -9.57335 -9.36508 -9.14081 -8.60038 -8.28202 -7.91980 -7.70732 -6.99915 -6.74634 -4.60649 1.94837 2.52707 2.71071 2.81494 2.87982 3.02135 3.05954 3.06795 3.25305 3.82203 3.87273 4.17786 4.29436 4.43370 4.54405 4.63800 4.73176 4.81902 4.95008 5.07471 5.21535 5.24717 5.36918 5.42112 5.48899 5.56935 5.60192 5.70671 5.82188 5.84136 5.93803 5.95291 6.21843 6.36757 6.61032 6.64169 6.81718 6.82309 6.97061 7.11539 7.13553 7.28537 7.43927 7.50167 7.85117 7.87568 8.09898 8.35544 8.47593 8.73910 8.77972 9.16854 9.73877 10.12722 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015804 B = 0.002991 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1771.274683 B = 9359.318626 C =10110.574062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.368 5.368 3 N -0.301 5.301 4 C 0.047 3.953 5 C -0.250 4.250 6 C 0.088 3.912 7 C 0.224 3.776 8 H 0.081 0.919 9 C -0.121 4.121 10 C -0.129 4.129 11 C 0.096 3.904 12 N -0.633 5.633 13 C 0.712 3.288 14 O -0.519 6.519 15 N -0.664 5.664 16 C 0.354 3.646 17 C -0.240 4.240 18 C 0.146 3.854 19 C -0.457 4.457 20 H 0.081 0.919 21 C 0.076 3.924 22 N -0.796 5.796 23 Si 0.913 3.087 24 H -0.269 1.269 25 H -0.276 1.276 26 H -0.261 1.261 27 C -0.281 4.281 28 C 0.119 3.881 29 N -0.550 5.550 30 H 0.071 0.929 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.180 0.820 34 H 0.139 0.861 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.087 0.913 38 H 0.078 0.922 39 H 0.076 0.924 40 H 0.069 0.931 41 H 0.403 0.597 42 H 0.129 0.871 43 H 0.280 0.720 44 H 0.102 0.898 45 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.836 -0.115 15.371 17.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.151 5.151 3 N -0.122 5.122 4 C -0.138 4.138 5 C -0.279 4.279 6 C -0.041 4.041 7 C 0.117 3.883 8 H 0.099 0.901 9 C -0.160 4.160 10 C -0.167 4.167 11 C -0.027 4.027 12 N -0.374 5.374 13 C 0.413 3.587 14 O -0.389 6.389 15 N -0.312 5.312 16 C 0.128 3.872 17 C -0.265 4.265 18 C 0.137 3.863 19 C -0.489 4.489 20 H 0.099 0.901 21 C -0.142 4.142 22 N -0.422 5.422 23 Si 0.737 3.263 24 H -0.194 1.194 25 H -0.201 1.201 26 H -0.185 1.185 27 C -0.305 4.305 28 C -0.035 4.035 29 N -0.269 5.269 30 H 0.090 0.910 31 H 0.106 0.894 32 H 0.103 0.897 33 H 0.197 0.803 34 H 0.157 0.843 35 H 0.102 0.898 36 H 0.103 0.897 37 H 0.105 0.895 38 H 0.097 0.903 39 H 0.094 0.906 40 H 0.088 0.912 41 H 0.238 0.762 42 H 0.146 0.854 43 H 0.091 0.909 44 H 0.120 0.880 45 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -10.699 2.071 15.411 18.875 hybrid contribution 2.211 -2.045 -0.539 3.060 sum -8.488 0.026 14.872 17.124 Atomic orbital electron populations 1.21798 0.74889 1.04599 1.02710 1.48291 1.06205 1.03264 1.57363 1.77288 1.01840 1.07758 1.25358 1.23746 0.95125 0.95112 0.99854 1.21041 0.96210 0.94705 1.15967 1.21156 0.91579 0.90030 1.01287 1.19635 0.92846 0.83851 0.91980 0.90110 1.22696 1.02881 0.96396 0.93993 1.22724 0.99032 0.96284 0.98632 1.22267 0.97038 0.92116 0.91272 1.47680 1.47464 1.34986 1.07301 1.15559 0.80848 0.82675 0.79587 1.91036 1.52388 1.34301 1.61132 1.42544 1.45267 1.31649 1.11727 1.17962 0.92486 0.93807 0.82917 1.21528 1.01211 1.05276 0.98531 1.17560 0.89443 0.88599 0.90673 1.19549 1.06275 1.27472 0.95580 0.90101 1.25923 0.98125 0.95530 0.94588 1.69754 1.28580 1.35758 1.08113 0.86234 0.80056 0.80221 0.79753 1.19436 1.20104 1.18479 1.21707 1.05405 1.02180 1.01163 1.21473 0.94832 0.97266 0.89943 1.67202 1.30981 1.20830 1.07864 0.91027 0.89378 0.89700 0.80313 0.84344 0.89830 0.89680 0.89474 0.90311 0.90557 0.91238 0.76217 0.85376 0.90881 0.88019 0.86114 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.02 11.27 59.85 0.67 1.69 16 2 N -0.37 -5.39 4.01 -63.88 -0.26 -5.64 16 3 N -0.30 -4.92 12.58 30.63 0.39 -4.54 16 4 C 0.05 0.73 12.03 -17.37 -0.21 0.52 16 5 C -0.25 -3.96 10.17 -40.01 -0.41 -4.37 16 6 C 0.09 1.30 5.10 -82.27 -0.42 0.88 16 7 C 0.22 2.76 3.10 -68.10 -0.21 2.55 16 8 H 0.08 1.00 6.98 -51.93 -0.36 0.64 16 9 C -0.12 -0.96 6.47 -24.90 -0.16 -1.12 16 10 C -0.13 -0.89 7.07 -24.70 -0.17 -1.07 16 11 C 0.10 0.96 6.60 -2.64 -0.02 0.94 16 12 N -0.63 -9.06 2.74 -170.14 -0.47 -9.52 16 13 C 0.71 14.11 8.10 -86.92 -0.70 13.41 16 14 O -0.52 -12.62 14.44 5.29 0.08 -12.55 16 15 N -0.66 -13.39 5.35 -15.86 -0.08 -13.48 16 16 C 0.35 8.74 7.42 -154.68 -1.15 7.59 16 17 C -0.24 -6.10 8.60 -38.45 -0.33 -6.43 16 18 C 0.15 3.85 5.58 -106.55 -0.59 3.26 16 19 C -0.46 -11.77 9.13 -37.65 -0.34 -12.12 16 20 H 0.08 1.99 7.87 -52.49 -0.41 1.58 16 21 C 0.08 1.84 5.30 -17.34 -0.09 1.75 16 22 N -0.80 -19.60 10.83 55.55 0.60 -19.00 16 23 Si 0.91 17.95 29.57 -169.99 -5.03 12.92 16 24 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 25 H -0.28 -5.27 7.11 56.52 0.40 -4.87 16 26 H -0.26 -5.10 7.11 56.52 0.40 -4.69 16 27 C -0.28 -6.99 9.85 -39.07 -0.38 -7.38 16 28 C 0.12 2.93 11.10 -18.05 -0.20 2.73 16 29 N -0.55 -14.42 7.86 -12.75 -0.10 -14.52 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.08 0.76 7.00 -51.93 -0.36 0.40 16 33 H 0.18 2.21 8.06 -52.49 -0.42 1.79 16 34 H 0.14 2.17 8.06 -52.49 -0.42 1.75 16 35 H 0.08 0.69 7.84 -51.93 -0.41 0.28 16 36 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.08 0.70 7.23 -51.93 -0.38 0.33 16 40 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.40 6.73 7.15 -40.82 -0.29 6.44 16 42 H 0.13 3.22 6.28 -52.49 -0.33 2.89 16 43 H 0.28 6.26 8.29 -40.82 -0.34 5.92 16 44 H 0.10 2.32 8.06 -52.48 -0.42 1.90 16 45 H 0.12 2.64 8.06 -52.48 -0.42 2.22 16 LS Contribution 375.31 15.07 5.66 5.66 Total: -1.00 -35.35 375.31 -9.84 -45.19 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: -5.91 Total: 12.64 kcal Atomic # 6 Polarization: 7.56 SS G_CDS: -4.72 Total: 2.83 kcal Atomic # 7 Polarization: -66.77 SS G_CDS: 0.08 Total: -66.70 kcal Atomic # 8 Polarization: -12.62 SS G_CDS: 0.08 Total: -12.55 kcal Atomic # 14 Polarization: 17.95 SS G_CDS: -5.03 Total: 12.92 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -35.35 -9.84 -45.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932163489.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.717 kcal (2) G-P(sol) polarization free energy of solvation -35.348 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.369 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.843 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.191 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds