Wall clock time and date at job start Sat Apr 11 2020 06:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 N 1.40081 * 126.03350 * 2 1 4 4 C 1.30841 * 108.20413 * 179.97438 * 3 2 1 5 5 C 1.39865 * 108.20081 * 359.77634 * 4 3 2 6 6 C 1.34944 * 126.03827 * 179.97438 * 2 1 3 7 7 C 1.50699 * 126.13011 * 359.97438 * 6 2 1 8 8 H 1.08998 * 109.99685 * 334.99791 * 7 6 2 9 9 C 1.54317 * 109.88378 * 96.09449 * 7 6 2 10 10 C 1.55154 * 102.94585 * 141.61291 * 9 7 6 11 11 C 1.55131 * 101.48477 * 324.33370 * 10 9 7 12 12 N 1.47027 * 109.88293 * 213.90350 * 7 6 2 13 13 C 1.34773 * 125.64901 * 61.60833 * 12 7 6 14 14 O 1.21581 * 120.00376 * 359.97438 * 13 12 7 15 15 N 1.34777 * 120.00031 * 179.97438 * 13 12 7 16 16 C 1.39454 * 120.00086 * 184.23471 * 15 13 12 17 17 C 1.38649 * 119.64674 * 181.78403 * 16 15 13 18 18 C 1.40826 * 118.67290 * 179.97438 * 17 16 15 19 19 C 1.41541 * 120.99778 * 180.27045 * 18 17 16 20 20 H 1.07997 * 120.00094 * 331.44846 * 19 18 17 21 21 C 1.40033 * 119.99773 * 151.43774 * 19 18 17 22 22 N 1.30751 * 119.99501 * 164.02693 * 21 19 18 23 23 Si 1.86794 * 120.00156 * 344.03208 * 21 19 18 24 24 H 1.48504 * 109.46939 * 92.06271 * 23 21 19 25 25 H 1.48499 * 109.46867 * 212.05809 * 23 21 19 26 26 H 1.48495 * 109.47202 * 332.06360 * 23 21 19 27 27 C 1.41170 * 118.00375 * 0.02562 * 18 17 16 28 28 C 1.36583 * 119.12809 * 359.97438 * 27 18 17 29 29 N 1.32074 * 121.26229 * 0.02562 * 28 27 18 30 30 H 1.09001 * 109.47348 * 274.02525 * 1 2 3 31 31 H 1.08996 * 109.47446 * 34.03138 * 1 2 3 32 32 H 1.09007 * 109.46574 * 154.02573 * 1 2 3 33 33 H 1.08004 * 125.89713 * 180.02562 * 4 3 2 34 34 H 1.08005 * 126.03858 * 180.23615 * 5 4 3 35 35 H 1.09001 * 110.72049 * 259.97539 * 9 7 6 36 36 H 1.08999 * 110.71991 * 23.24344 * 9 7 6 37 37 H 1.08999 * 111.00721 * 82.57178 * 10 9 7 38 38 H 1.09004 * 111.00487 * 206.42252 * 10 9 7 39 39 H 1.09003 * 110.49512 * 278.45450 * 11 10 9 40 40 H 1.08992 * 110.34618 * 156.06130 * 11 10 9 41 41 H 0.97005 * 119.99630 * 4.24039 * 15 13 12 42 42 H 1.07991 * 120.66380 * 0.02562 * 17 16 15 43 43 H 0.96993 * 119.99434 * 179.97438 * 22 21 19 44 44 H 1.07994 * 120.42991 * 180.02562 * 27 18 17 45 45 H 1.08000 * 119.37013 * 180.02562 * 28 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2890 1.1328 0.0000 4 6 3.5346 0.7322 0.0006 5 6 3.5437 -0.6664 0.0061 6 6 2.2589 -1.0912 0.0005 7 6 1.7974 -2.5258 0.0017 8 1 0.7998 -2.5960 0.4350 9 6 1.7829 -3.0736 -1.4409 10 6 2.2865 -4.5305 -1.2645 11 6 3.3260 -4.3622 -0.1254 12 7 2.7370 -3.3527 0.7731 13 6 3.0176 -3.2080 2.0834 14 8 2.4738 -2.3328 2.7286 15 7 3.9012 -4.0337 2.6785 16 6 4.1258 -3.9418 4.0517 17 6 5.0633 -4.7695 4.6502 18 6 5.2741 -4.6590 6.0383 19 6 6.2230 -5.4755 6.6988 20 1 6.4569 -6.4551 6.3089 21 6 6.8586 -5.0129 7.8576 22 7 7.4856 -5.8532 8.6389 23 14 6.8107 -3.1957 8.2872 24 1 5.6471 -2.9262 9.1697 25 1 8.0632 -2.8203 8.9911 26 1 6.6836 -2.3960 7.0425 27 6 4.5142 -3.7058 6.7502 28 6 3.6130 -2.9341 6.0736 29 7 3.4410 -3.0645 4.7706 30 1 -0.3634 0.0721 1.0251 31 1 -0.3634 0.8516 -0.5751 32 1 -0.3633 -0.9239 -0.4501 33 1 4.4053 1.3712 0.0011 34 1 4.4211 -1.2962 0.0115 35 1 0.7717 -3.0618 -1.8477 36 1 2.4619 -2.5050 -2.0762 37 1 1.4739 -5.1909 -0.9620 38 1 2.7631 -4.8921 -2.1757 39 1 4.2758 -4.0065 -0.5248 40 1 3.4652 -5.3053 0.4030 41 1 4.3809 -4.6918 2.1515 42 1 5.6214 -5.4841 4.0636 43 1 7.9262 -5.5327 9.4414 44 1 4.6445 -3.5878 7.8158 45 1 3.0299 -2.2034 6.6143 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932163496.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:20 Heat of formation + Delta-G solvation = 108.922606 kcal Electronic energy + Delta-G solvation = -29555.490581 eV Core-core repulsion = 25575.594226 eV Total energy + Delta-G solvation = -3979.896355 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.42983 -40.10017 -38.71858 -37.24669 -34.50676 -33.72497 -33.31919 -31.70554 -31.28228 -31.20585 -28.73538 -27.94146 -26.73867 -26.00117 -24.11356 -22.16486 -21.77870 -21.74998 -21.04954 -20.22597 -18.99466 -18.27148 -17.68322 -17.26632 -16.22405 -15.83886 -15.45851 -15.40261 -14.87452 -14.75119 -14.47957 -14.28625 -14.13110 -13.67924 -13.58583 -13.31392 -13.14825 -13.03812 -12.83618 -12.73011 -12.69055 -12.45460 -12.22061 -11.88721 -11.62674 -11.53228 -11.17978 -11.14930 -10.81543 -10.71623 -10.62503 -9.93208 -9.78168 -9.71601 -9.35731 -9.23836 -8.72789 -8.39843 -8.25074 -7.85862 -7.23200 -7.05895 -4.73261 1.84241 2.39359 2.44068 2.64561 2.73572 2.94310 3.09598 3.19303 3.29927 3.64087 3.92549 4.02629 4.16947 4.29486 4.43539 4.52602 4.60461 4.71345 4.86021 5.03096 5.09926 5.16017 5.29944 5.31180 5.38552 5.42861 5.47603 5.50204 5.64281 5.70539 5.80444 5.83925 6.07288 6.19757 6.33996 6.36274 6.47438 6.57826 6.71294 6.92725 7.01963 7.12666 7.18093 7.21495 7.65319 7.75371 7.93305 8.12620 8.23052 8.44387 8.66250 8.97410 9.49623 9.95223 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.016943 B = 0.002940 C = 0.002687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1652.157591 B = 9521.954895 C =10417.063181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.367 5.367 3 N -0.299 5.299 4 C 0.046 3.954 5 C -0.252 4.252 6 C 0.088 3.912 7 C 0.223 3.777 8 H 0.083 0.917 9 C -0.122 4.122 10 C -0.128 4.128 11 C 0.095 3.905 12 N -0.632 5.632 13 C 0.712 3.288 14 O -0.515 6.515 15 N -0.666 5.666 16 C 0.379 3.621 17 C -0.296 4.296 18 C 0.131 3.869 19 C -0.438 4.438 20 H 0.094 0.906 21 C 0.087 3.913 22 N -0.800 5.800 23 Si 0.918 3.082 24 H -0.267 1.267 25 H -0.291 1.291 26 H -0.246 1.246 27 C -0.305 4.305 28 C 0.140 3.860 29 N -0.554 5.554 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.180 0.820 34 H 0.138 0.862 35 H 0.085 0.915 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.087 0.913 39 H 0.070 0.930 40 H 0.077 0.923 41 H 0.404 0.596 42 H 0.108 0.892 43 H 0.288 0.712 44 H 0.109 0.891 45 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.968 3.271 -20.505 22.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.150 5.150 3 N -0.121 5.121 4 C -0.139 4.139 5 C -0.281 4.281 6 C -0.041 4.041 7 C 0.116 3.884 8 H 0.100 0.900 9 C -0.161 4.161 10 C -0.166 4.166 11 C -0.028 4.028 12 N -0.373 5.373 13 C 0.413 3.587 14 O -0.384 6.384 15 N -0.315 5.315 16 C 0.152 3.848 17 C -0.323 4.323 18 C 0.123 3.877 19 C -0.468 4.468 20 H 0.112 0.888 21 C -0.134 4.134 22 N -0.424 5.424 23 Si 0.745 3.255 24 H -0.193 1.193 25 H -0.219 1.219 26 H -0.169 1.169 27 C -0.328 4.328 28 C -0.012 4.012 29 N -0.274 5.274 30 H 0.094 0.906 31 H 0.105 0.895 32 H 0.102 0.898 33 H 0.197 0.803 34 H 0.156 0.844 35 H 0.104 0.896 36 H 0.102 0.898 37 H 0.098 0.902 38 H 0.106 0.894 39 H 0.088 0.912 40 H 0.096 0.904 41 H 0.239 0.761 42 H 0.126 0.874 43 H 0.099 0.901 44 H 0.127 0.873 45 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -10.800 5.402 -20.161 23.501 hybrid contribution 1.621 -0.926 0.677 1.986 sum -9.179 4.476 -19.485 21.999 Atomic orbital electron populations 1.21812 0.74781 1.03767 1.03701 1.48307 1.06266 1.03246 1.57207 1.77300 1.01836 1.07747 1.25194 1.23752 0.95151 0.95083 0.99929 1.21022 0.96147 0.94714 1.16238 1.21170 0.91596 0.90045 1.01315 1.19652 0.92949 0.83811 0.91952 0.89956 1.22711 1.02980 0.96426 0.93955 1.22792 0.98959 0.96273 0.98592 1.22378 0.96908 0.92163 0.91374 1.47669 1.47121 1.35244 1.07294 1.15536 0.80898 0.82556 0.79661 1.91055 1.52752 1.33279 1.61292 1.42590 1.43419 1.38229 1.07214 1.17831 0.92124 0.92799 0.81996 1.21112 1.07336 1.08561 0.95244 1.17647 0.90268 0.89409 0.90422 1.19463 1.18457 1.02992 1.05901 0.88840 1.26187 0.92599 1.00858 0.93746 1.69631 1.25118 1.37337 1.10343 0.86247 0.76740 0.82191 0.80358 1.19318 1.21876 1.16908 1.21716 1.04914 1.06292 0.99884 1.21533 0.94656 0.95780 0.89277 1.67307 1.29532 1.23320 1.07211 0.90592 0.89515 0.89786 0.80297 0.84382 0.89633 0.89775 0.90168 0.89446 0.91201 0.90439 0.76125 0.87354 0.90138 0.87326 0.85574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.94 11.16 59.85 0.67 1.60 16 2 N -0.37 -5.03 4.01 -63.88 -0.26 -5.28 16 3 N -0.30 -4.61 12.58 30.62 0.39 -4.23 16 4 C 0.05 0.66 12.03 -17.37 -0.21 0.45 16 5 C -0.25 -3.62 10.17 -40.01 -0.41 -4.03 16 6 C 0.09 1.19 5.10 -82.27 -0.42 0.77 16 7 C 0.22 2.50 2.89 -68.11 -0.20 2.30 16 8 H 0.08 0.95 7.44 -51.93 -0.39 0.56 16 9 C -0.12 -0.83 6.46 -24.90 -0.16 -0.99 16 10 C -0.13 -0.74 7.10 -24.46 -0.17 -0.91 16 11 C 0.09 0.79 6.56 -2.41 -0.02 0.77 16 12 N -0.63 -8.11 2.74 -169.87 -0.47 -8.58 16 13 C 0.71 12.96 8.10 -86.92 -0.70 12.26 16 14 O -0.51 -11.82 14.44 5.29 0.08 -11.74 16 15 N -0.67 -12.01 5.35 -15.86 -0.08 -12.09 16 16 C 0.38 8.59 7.42 -154.68 -1.15 7.44 16 17 C -0.30 -6.82 9.74 -38.45 -0.37 -7.20 16 18 C 0.13 3.31 5.18 -106.55 -0.55 2.76 16 19 C -0.44 -11.53 9.65 -37.65 -0.36 -11.90 16 20 H 0.09 2.54 8.06 -52.49 -0.42 2.11 16 21 C 0.09 2.23 5.45 -17.34 -0.09 2.13 16 22 N -0.80 -20.71 13.92 55.55 0.77 -19.93 16 23 Si 0.92 20.78 24.46 -169.99 -4.16 16.62 16 24 H -0.27 -5.85 6.57 56.52 0.37 -5.48 16 25 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 26 H -0.25 -5.84 6.84 56.52 0.39 -5.45 16 27 C -0.30 -7.48 7.20 -39.07 -0.28 -7.76 16 28 C 0.14 3.36 11.10 -18.05 -0.20 3.16 16 29 N -0.55 -13.76 7.86 -12.76 -0.10 -13.86 16 30 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.08 0.53 7.37 -51.93 -0.38 0.15 16 33 H 0.18 2.00 8.06 -52.48 -0.42 1.57 16 34 H 0.14 1.90 8.06 -52.48 -0.42 1.48 16 35 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.08 0.59 7.84 -51.93 -0.41 0.18 16 37 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 38 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.08 0.59 7.35 -51.93 -0.38 0.20 16 41 H 0.40 5.64 7.22 -40.82 -0.29 5.35 16 42 H 0.11 2.23 8.06 -52.49 -0.42 1.81 16 43 H 0.29 6.74 8.29 -40.82 -0.34 6.40 16 44 H 0.11 2.60 4.39 -52.49 -0.23 2.37 16 45 H 0.13 2.68 8.06 -52.49 -0.42 2.26 16 LS Contribution 370.20 15.07 5.58 5.58 Total: -1.00 -35.67 370.20 -8.80 -44.47 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -5.91 Total: 8.20 kcal Atomic # 6 Polarization: 5.48 SS G_CDS: -4.63 Total: 0.85 kcal Atomic # 7 Polarization: -64.23 SS G_CDS: 0.25 Total: -63.98 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: 0.08 Total: -11.74 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -4.16 Total: 16.62 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.67 -8.80 -44.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932163496.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.389 kcal (2) G-P(sol) polarization free energy of solvation -35.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.797 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.466 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds