Wall clock time and date at job start Sat Apr 11 2020 06:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.40086 * 126.04132 * 2 1 4 4 C 1.30831 * 108.20545 * 180.02562 * 3 2 1 5 5 C 1.50700 * 125.90019 * 180.02562 * 4 3 2 6 6 C 1.52997 * 117.50591 * 163.77098 * 5 4 3 7 7 C 1.53001 * 117.50199 * 95.10780 * 5 4 3 8 8 C 1.39866 * 108.20547 * 359.77751 * 4 3 2 9 9 C 1.34945 * 126.03547 * 180.02562 * 2 1 3 10 10 C 1.50707 * 126.12738 * 359.94487 * 9 2 1 11 11 N 1.46498 * 109.47006 * 275.00020 * 10 9 2 12 12 C 1.34776 * 119.99604 * 179.97438 * 11 10 9 13 13 O 1.21579 * 120.00651 * 0.02562 * 12 11 10 14 14 N 1.34781 * 120.00066 * 179.97438 * 12 11 10 15 15 C 1.39457 * 120.00094 * 174.94706 * 14 12 11 16 16 C 1.38652 * 119.64585 * 174.65499 * 15 14 12 17 17 C 1.40814 * 118.67337 * 180.25135 * 16 15 14 18 18 C 1.41540 * 120.99715 * 179.71855 * 17 16 15 19 19 H 1.07999 * 119.99888 * 26.12783 * 18 17 16 20 20 C 1.40033 * 119.99998 * 206.12081 * 18 17 16 21 21 N 1.30741 * 120.00507 * 9.80657 * 20 18 17 22 22 Si 1.86803 * 119.99983 * 189.80470 * 20 18 17 23 23 H 1.48500 * 109.47275 * 89.99956 * 22 20 18 24 24 H 1.48498 * 109.47306 * 210.00297 * 22 20 18 25 25 H 1.48498 * 109.46960 * 330.00216 * 22 20 18 26 26 C 1.41168 * 118.00425 * 359.51055 * 17 16 15 27 27 C 1.36594 * 119.12735 * 0.46923 * 26 17 16 28 28 N 1.32064 * 121.25591 * 359.77207 * 27 26 17 29 29 H 1.08997 * 109.47298 * 269.98435 * 1 2 3 30 30 H 1.09006 * 109.46845 * 29.97556 * 1 2 3 31 31 H 1.09000 * 109.47611 * 149.97209 * 1 2 3 32 32 H 1.09008 * 115.54886 * 309.43870 * 5 4 3 33 33 H 1.09009 * 117.49461 * 359.97438 * 6 5 4 34 34 H 1.08993 * 117.50342 * 145.01470 * 6 5 4 35 35 H 1.08999 * 117.49894 * 214.98221 * 7 5 4 36 36 H 1.08996 * 117.49883 * 359.97438 * 7 5 4 37 37 H 1.07997 * 126.04504 * 180.23008 * 8 4 3 38 38 H 1.08997 * 109.47235 * 154.99555 * 10 9 2 39 39 H 1.08998 * 109.46682 * 34.99655 * 10 9 2 40 40 H 0.97001 * 120.00251 * 0.02562 * 11 10 9 41 41 H 0.97005 * 119.99544 * 354.95592 * 14 12 11 42 42 H 1.07997 * 120.66003 * 359.97438 * 16 15 14 43 43 H 0.96999 * 120.00661 * 179.97438 * 21 20 18 44 44 H 1.08003 * 120.43762 * 180.24155 * 26 17 16 45 45 H 1.08000 * 119.36750 * 179.79090 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2892 1.1327 0.0000 4 6 3.5346 0.7320 -0.0006 5 6 4.7497 1.6234 -0.0002 6 6 6.0902 0.9905 0.3783 7 6 5.3912 1.9430 1.3516 8 6 3.5437 -0.6666 0.0042 9 6 2.2588 -1.0912 -0.0005 10 6 1.7972 -2.5259 0.0000 11 7 1.5341 -2.9537 1.3763 12 6 1.1075 -4.2083 1.6220 13 8 0.9414 -4.9852 0.7016 14 7 0.8659 -4.6021 2.8881 15 6 0.3248 -5.8635 3.1348 16 6 0.1826 -6.3053 4.4413 17 6 -0.3611 -7.5845 4.6667 18 6 -0.5228 -8.0868 5.9800 19 1 -0.6415 -7.4041 6.8085 20 6 -0.5289 -9.4689 6.2052 21 7 -0.1962 -10.2895 5.2434 22 14 -1.0123 -10.1402 7.8801 23 1 -2.4776 -10.3791 7.9136 24 1 -0.2967 -11.4178 8.1267 25 1 -0.6469 -9.1573 8.9316 26 6 -0.7444 -8.3491 3.5436 27 6 -0.5663 -7.8290 2.2931 28 7 -0.0483 -6.6269 2.1183 29 1 -0.3634 -0.0003 1.0276 30 1 -0.3633 0.8903 -0.5135 31 1 -0.3634 -0.8897 -0.5143 32 1 4.7591 2.4058 -0.7592 33 1 6.0932 -0.0707 0.6276 34 1 6.9814 1.3566 -0.1313 35 1 5.8228 2.9353 1.4818 36 1 4.9341 1.5088 2.2407 37 1 4.4210 -1.2964 0.0085 38 1 2.5721 -3.1571 -0.4349 39 1 0.8841 -2.6138 -0.5886 40 1 1.6662 -2.3337 2.1105 41 1 1.0683 -4.0080 3.6278 42 1 0.4870 -5.6824 5.2695 43 1 -0.2000 -11.2469 5.3994 44 1 -1.1693 -9.3337 3.6712 45 1 -0.8550 -8.4120 1.4310 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932164249.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:23 Heat of formation + Delta-G solvation = 119.534628 kcal Electronic energy + Delta-G solvation = -27746.828910 eV Core-core repulsion = 23767.392727 eV Total energy + Delta-G solvation = -3979.436183 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.67183 -39.85323 -38.09968 -37.46428 -35.03755 -34.30977 -33.59397 -33.12888 -30.95094 -30.66111 -28.54154 -27.15517 -26.23034 -25.91097 -23.48006 -22.71372 -22.05991 -21.71384 -20.42452 -20.16145 -19.55509 -18.14692 -17.94111 -16.81154 -16.18284 -16.05201 -15.66704 -15.32075 -15.22011 -14.68181 -14.58989 -14.39319 -14.26064 -14.12435 -13.61149 -13.31022 -13.02567 -12.97871 -12.89142 -12.68659 -12.39226 -12.25871 -12.04902 -11.80532 -11.42992 -11.27169 -11.18066 -10.99062 -10.94594 -10.51976 -10.38661 -10.07587 -9.79350 -9.68482 -9.42690 -9.32897 -9.01208 -8.78383 -8.01946 -7.75244 -7.04693 -6.76479 -4.64170 1.42558 2.16853 2.35081 2.69867 2.76522 3.00999 3.03686 3.06914 3.22041 3.51527 3.77656 3.84651 4.04217 4.20795 4.46805 4.53701 4.58785 4.64600 4.69566 4.88011 4.89989 5.06564 5.16415 5.28957 5.33635 5.43442 5.47788 5.56504 5.68974 5.78105 5.80293 5.92622 5.93852 6.34960 6.42747 6.47428 6.57933 6.68890 6.75712 6.91018 7.10564 7.18606 7.41936 7.45586 7.52727 7.88434 8.05359 8.26347 8.47154 8.72362 8.74064 9.04453 9.70863 10.09123 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.020040 B = 0.001884 C = 0.001812 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.870973 B =14861.160047 C =15450.811478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.363 5.363 3 N -0.284 5.284 4 C 0.100 3.900 5 C -0.081 4.081 6 C -0.165 4.165 7 C -0.165 4.165 8 C -0.244 4.244 9 C 0.069 3.931 10 C 0.208 3.792 11 N -0.752 5.752 12 C 0.694 3.306 13 O -0.528 6.528 14 N -0.669 5.669 15 C 0.365 3.635 16 C -0.305 4.305 17 C 0.146 3.854 18 C -0.455 4.455 19 H 0.080 0.920 20 C 0.075 3.925 21 N -0.790 5.790 22 Si 0.916 3.084 23 H -0.267 1.267 24 H -0.277 1.277 25 H -0.262 1.262 26 C -0.222 4.222 27 C 0.104 3.896 28 N -0.553 5.553 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.091 0.909 32 H 0.119 0.881 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.099 0.901 36 H 0.096 0.904 37 H 0.150 0.850 38 H 0.093 0.907 39 H 0.077 0.923 40 H 0.393 0.607 41 H 0.403 0.597 42 H 0.101 0.899 43 H 0.283 0.717 44 H 0.131 0.869 45 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.629 19.235 -6.464 21.347 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.043 4.043 2 N -0.145 5.145 3 N -0.107 5.107 4 C -0.065 4.065 5 C -0.101 4.101 6 C -0.202 4.202 7 C -0.203 4.203 8 C -0.274 4.274 9 C -0.059 4.059 10 C 0.082 3.918 11 N -0.411 5.411 12 C 0.393 3.607 13 O -0.399 6.399 14 N -0.317 5.317 15 C 0.136 3.864 16 C -0.331 4.331 17 C 0.137 3.863 18 C -0.486 4.486 19 H 0.098 0.902 20 C -0.144 4.144 21 N -0.416 5.416 22 Si 0.740 3.260 23 H -0.192 1.192 24 H -0.202 1.202 25 H -0.186 1.186 26 C -0.245 4.245 27 C -0.047 4.047 28 N -0.272 5.272 29 H 0.096 0.904 30 H 0.108 0.892 31 H 0.109 0.891 32 H 0.137 0.863 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.118 0.882 36 H 0.114 0.886 37 H 0.167 0.833 38 H 0.111 0.889 39 H 0.096 0.904 40 H 0.226 0.774 41 H 0.237 0.763 42 H 0.119 0.881 43 H 0.094 0.906 44 H 0.149 0.851 45 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 5.617 19.558 -8.328 21.987 hybrid contribution 0.351 -0.758 2.334 2.479 sum 5.969 18.800 -5.994 20.615 Atomic orbital electron populations 1.21928 0.73923 1.04697 1.03792 1.48475 1.06587 1.03087 1.56369 1.77313 1.01145 1.07439 1.24782 1.21316 0.92150 0.93009 1.00001 1.20127 0.89047 1.00474 1.00409 1.23035 0.94537 0.99710 1.02960 1.23000 1.03144 1.00896 0.93270 1.21150 0.96303 0.94255 1.15683 1.21064 0.91236 0.90191 1.03367 1.19484 1.01853 0.86581 0.83913 1.45184 1.74725 1.13080 1.08160 1.16009 0.78969 0.81639 0.84038 1.91038 1.54851 1.51546 1.42429 1.42551 1.65758 1.16752 1.06590 1.17737 0.94292 0.84354 0.89978 1.21178 1.17138 1.01585 0.93216 1.17600 0.85634 0.89228 0.93799 1.19565 1.43873 0.91632 0.93513 0.90161 1.25969 0.92233 0.97097 0.99102 1.69749 1.33565 1.04801 1.33487 0.86185 0.79509 0.78698 0.81584 1.19200 1.20162 1.18571 1.22084 1.07108 1.03065 0.92289 1.21627 0.96138 0.90857 0.96039 1.67161 1.20236 1.07117 1.32687 0.90445 0.89163 0.89092 0.86344 0.88091 0.88069 0.88229 0.88573 0.83277 0.88894 0.90445 0.77408 0.76333 0.88095 0.90635 0.85087 0.85999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.75 11.27 59.85 0.67 1.42 16 2 N -0.36 -3.85 4.01 -63.88 -0.26 -4.11 16 3 N -0.28 -3.45 12.58 33.67 0.42 -3.02 16 4 C 0.10 1.08 6.85 -82.41 -0.56 0.52 16 5 C -0.08 -0.67 6.33 -91.77 -0.58 -1.25 16 6 C -0.16 -1.08 10.02 -26.70 -0.27 -1.34 16 7 C -0.17 -1.16 10.24 -26.69 -0.27 -1.43 16 8 C -0.24 -2.54 10.02 -40.01 -0.40 -2.94 16 9 C 0.07 0.73 6.30 -82.26 -0.52 0.21 16 10 C 0.21 2.33 5.84 -5.19 -0.03 2.30 16 11 N -0.75 -9.37 5.55 -66.41 -0.37 -9.74 16 12 C 0.69 12.39 8.51 -86.91 -0.74 11.65 16 13 O -0.53 -11.89 14.64 5.30 0.08 -11.82 16 14 N -0.67 -12.13 5.40 -15.86 -0.09 -12.21 16 15 C 0.37 8.49 7.41 -154.68 -1.15 7.34 16 16 C -0.30 -7.25 9.74 -38.46 -0.37 -7.62 16 17 C 0.15 3.81 5.60 -106.55 -0.60 3.21 16 18 C -0.45 -11.57 9.13 -37.65 -0.34 -11.92 16 19 H 0.08 1.94 7.87 -52.49 -0.41 1.53 16 20 C 0.07 1.81 5.31 -17.34 -0.09 1.72 16 21 N -0.79 -19.79 10.70 55.55 0.59 -19.19 16 22 Si 0.92 17.94 29.57 -169.99 -5.03 12.91 16 23 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 24 H -0.28 -5.32 7.11 56.52 0.40 -4.92 16 25 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 26 C -0.22 -5.75 8.73 -39.06 -0.34 -6.09 16 27 C 0.10 2.59 11.10 -18.05 -0.20 2.39 16 28 N -0.55 -14.07 7.89 -12.76 -0.10 -14.17 16 29 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.09 0.62 7.15 -51.93 -0.37 0.25 16 32 H 0.12 0.89 8.14 -51.92 -0.42 0.46 16 33 H 0.10 0.67 7.14 -51.92 -0.37 0.30 16 34 H 0.10 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.15 1.34 7.38 -52.49 -0.39 0.95 16 38 H 0.09 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.08 0.88 7.24 -51.93 -0.38 0.50 16 40 H 0.39 4.01 8.48 -40.82 -0.35 3.67 16 41 H 0.40 5.64 8.72 -40.82 -0.36 5.29 16 42 H 0.10 2.15 8.06 -52.49 -0.42 1.73 16 43 H 0.28 6.42 8.29 -40.82 -0.34 6.08 16 44 H 0.13 3.43 6.11 -52.48 -0.32 3.11 16 45 H 0.12 2.73 8.06 -52.49 -0.42 2.31 16 LS Contribution 385.58 15.07 5.81 5.81 Total: -1.00 -33.44 385.58 -10.61 -44.05 By element: Atomic # 1 Polarization: 19.20 SS G_CDS: -5.88 Total: 13.32 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: -5.80 Total: -1.83 kcal Atomic # 7 Polarization: -62.65 SS G_CDS: 0.21 Total: -62.44 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: 0.08 Total: -11.82 kcal Atomic # 14 Polarization: 17.94 SS G_CDS: -5.03 Total: 12.91 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.44 -10.61 -44.05 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932164249.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.581 kcal (2) G-P(sol) polarization free energy of solvation -33.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds