Wall clock time and date at job start Sat Apr 11 2020 06:22:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46504 * 120.00008 * 2 1 4 4 C 1.39167 * 120.00049 * 180.02562 * 2 1 3 5 5 C 1.39496 * 120.86376 * 5.97848 * 4 2 1 6 6 C 1.37876 * 119.06602 * 180.02562 * 5 4 2 7 7 N 1.32000 * 120.84537 * 359.97438 * 6 5 4 8 8 C 1.31975 * 121.91430 * 0.02584 * 7 6 5 9 9 C 1.50698 * 119.58313 * 180.02562 * 8 7 6 10 10 N 1.46499 * 109.47004 * 274.99476 * 9 8 7 11 11 C 1.34772 * 120.00047 * 179.97438 * 10 9 8 12 12 O 1.21579 * 120.00305 * 0.02562 * 11 10 9 13 13 N 1.34779 * 120.00095 * 180.02562 * 11 10 9 14 14 C 1.39461 * 120.00272 * 184.87419 * 13 11 10 15 15 C 1.38640 * 119.65163 * 174.58676 * 14 13 11 16 16 C 1.40821 * 118.67448 * 179.97438 * 15 14 13 17 17 C 1.41542 * 120.99543 * 179.97438 * 16 15 14 18 18 H 1.07999 * 120.00033 * 152.14275 * 17 16 15 19 19 C 1.40036 * 120.00130 * 332.13561 * 17 16 15 20 20 N 1.30739 * 119.99878 * 350.73734 * 19 17 16 21 21 Si 1.86798 * 120.00145 * 170.73037 * 19 17 16 22 22 H 1.48498 * 109.47175 * 90.00233 * 21 19 17 23 23 H 1.48497 * 109.47307 * 210.00746 * 21 19 17 24 24 H 1.48500 * 109.47227 * 330.00362 * 21 19 17 25 25 C 1.41163 * 118.00561 * 359.97438 * 16 15 14 26 26 C 1.36587 * 119.12620 * 0.02562 * 25 16 15 27 27 N 1.32070 * 121.26134 * 359.71960 * 26 25 16 28 28 C 1.37915 * 120.83877 * 0.27126 * 8 7 6 29 29 H 1.08993 * 109.46768 * 269.99815 * 1 2 3 30 30 H 1.08998 * 109.46666 * 29.99601 * 1 2 3 31 31 H 1.08995 * 109.47197 * 149.99588 * 1 2 3 32 32 H 1.09000 * 109.46979 * 185.12033 * 3 2 1 33 33 H 1.09001 * 109.47194 * 305.12022 * 3 2 1 34 34 H 1.08998 * 109.46958 * 65.11852 * 3 2 1 35 35 H 1.08004 * 120.46848 * 0.02562 * 5 4 2 36 36 H 1.08008 * 119.57173 * 179.97438 * 6 5 4 37 37 H 1.09007 * 109.47260 * 155.00128 * 9 8 7 38 38 H 1.08994 * 109.47336 * 34.99796 * 9 8 7 39 39 H 0.97006 * 119.99866 * 0.02562 * 10 9 8 40 40 H 0.97000 * 120.00126 * 5.14524 * 13 11 10 41 41 H 1.08001 * 120.66050 * 0.02562 * 15 14 13 42 42 H 0.96999 * 119.99983 * 179.97438 * 20 19 17 43 43 H 1.07999 * 120.43290 * 179.97438 * 25 16 15 44 44 H 1.08003 * 119.36899 * 179.97438 * 26 25 16 45 45 H 1.08006 * 120.47023 * 179.72892 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2688 0.0000 4 6 2.1609 -1.2052 -0.0005 5 6 1.4873 -2.4204 -0.1258 6 6 2.2136 -3.5923 -0.1213 7 7 3.5280 -3.5736 -0.0011 8 6 4.2015 -2.4451 0.1196 9 6 5.7020 -2.4848 0.2530 10 7 6.0621 -2.6903 1.6581 11 6 7.3589 -2.7602 2.0182 12 8 8.2301 -2.6522 1.1771 13 7 7.6901 -2.9498 3.3108 14 6 9.0293 -2.9206 3.6991 15 6 9.3555 -3.0037 5.0440 16 6 10.7141 -2.9728 5.4130 17 6 11.1025 -3.0537 6.7716 18 1 12.0635 -3.4705 7.0347 19 6 10.2408 -2.5931 7.7748 20 7 9.1626 -1.9264 7.4551 21 14 10.6318 -2.9313 9.5698 22 1 11.4561 -1.8226 10.1143 23 1 9.3671 -3.0330 10.3413 24 1 11.3833 -4.2074 9.6808 25 6 11.6771 -2.8587 4.3871 26 6 11.2597 -2.7828 3.0888 27 7 9.9765 -2.8197 2.7782 28 6 3.5491 -1.2300 0.1302 29 1 -0.3632 0.0000 1.0276 30 1 -0.3632 0.8900 -0.5138 31 1 -0.3633 -0.8899 -0.5139 32 1 3.2656 1.0716 -0.0917 33 1 1.8672 1.8790 -0.8406 34 1 2.0048 1.7996 0.9323 35 1 0.4121 -2.4428 -0.2249 36 1 1.7004 -4.5378 -0.2173 37 1 6.1230 -1.5417 -0.0956 38 1 6.0986 -3.3036 -0.3472 39 1 5.3670 -2.7769 2.3292 40 1 6.9974 -3.1105 3.9705 41 1 8.5830 -3.0912 5.7937 42 1 8.5655 -1.6077 8.1499 43 1 12.7300 -2.8310 4.6258 44 1 11.9931 -2.6951 2.3009 45 1 4.1058 -0.3103 0.2337 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932165422.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:26 Heat of formation + Delta-G solvation = 67.500050 kcal Electronic energy + Delta-G solvation = -27829.839500 eV Core-core repulsion = 23848.146929 eV Total energy + Delta-G solvation = -3981.692572 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.67430 -39.63596 -38.01660 -37.34441 -34.79225 -34.08367 -33.64557 -31.69491 -31.43844 -30.44096 -29.09834 -28.40772 -26.42509 -25.92650 -25.41639 -22.93448 -21.96711 -21.66852 -20.86483 -20.02059 -18.25972 -17.61378 -17.54484 -17.00110 -16.13707 -15.68913 -15.54573 -15.29905 -15.09908 -14.74015 -14.61889 -14.49460 -14.18221 -14.12958 -13.68287 -13.55031 -13.15261 -13.02345 -12.96669 -12.78433 -12.56652 -12.51471 -12.34152 -12.05273 -11.47426 -11.40875 -11.14701 -10.91661 -10.85807 -10.25361 -10.08975 -9.69647 -9.63146 -9.55655 -9.33937 -9.24202 -8.73031 -8.02794 -7.88629 -7.66929 -6.95273 -6.70917 -4.57843 0.88263 1.28222 2.58457 2.75258 2.84834 3.03933 3.08612 3.09989 3.28467 3.76130 3.88956 3.94566 4.11634 4.36520 4.44813 4.70965 4.75877 4.76455 4.81313 4.82916 4.99273 5.06681 5.11432 5.20534 5.29497 5.43962 5.52477 5.68856 5.72315 5.74612 5.92905 6.02520 6.36999 6.59534 6.67137 6.68555 6.74408 6.85246 6.91994 7.00565 7.17777 7.35247 7.48350 7.54872 7.92174 7.95966 8.16881 8.46071 8.51523 8.77804 8.81100 9.25211 9.78407 10.15259 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014433 B = 0.002113 C = 0.001970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.481527 B =13245.223493 C =14212.258410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.629 5.629 3 C 0.085 3.915 4 C 0.248 3.752 5 C -0.250 4.250 6 C 0.140 3.860 7 N -0.510 5.510 8 C 0.154 3.846 9 C 0.195 3.805 10 N -0.746 5.746 11 C 0.694 3.306 12 O -0.533 6.533 13 N -0.667 5.667 14 C 0.355 3.645 15 C -0.241 4.241 16 C 0.144 3.856 17 C -0.456 4.456 18 H 0.081 0.919 19 C 0.075 3.925 20 N -0.797 5.797 21 Si 0.914 3.086 22 H -0.269 1.269 23 H -0.276 1.276 24 H -0.261 1.261 25 C -0.281 4.281 26 C 0.118 3.882 27 N -0.550 5.550 28 C -0.231 4.231 29 H 0.052 0.948 30 H 0.069 0.931 31 H 0.071 0.929 32 H 0.081 0.919 33 H 0.060 0.940 34 H 0.057 0.943 35 H 0.132 0.868 36 H 0.155 0.845 37 H 0.079 0.921 38 H 0.083 0.917 39 H 0.392 0.608 40 H 0.404 0.596 41 H 0.130 0.870 42 H 0.280 0.720 43 H 0.102 0.898 44 H 0.122 0.878 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.587 4.130 -10.400 23.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.340 5.340 3 C -0.058 4.058 4 C 0.137 3.863 5 C -0.276 4.276 6 C -0.017 4.017 7 N -0.222 5.222 8 C 0.017 3.983 9 C 0.070 3.930 10 N -0.405 5.405 11 C 0.394 3.606 12 O -0.404 6.404 13 N -0.315 5.315 14 C 0.129 3.871 15 C -0.267 4.267 16 C 0.135 3.865 17 C -0.488 4.488 18 H 0.099 0.901 19 C -0.143 4.143 20 N -0.423 5.423 21 Si 0.738 3.262 22 H -0.195 1.195 23 H -0.201 1.201 24 H -0.185 1.185 25 C -0.305 4.305 26 C -0.036 4.036 27 N -0.269 5.269 28 C -0.257 4.257 29 H 0.070 0.930 30 H 0.088 0.912 31 H 0.089 0.911 32 H 0.099 0.901 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.150 0.850 36 H 0.172 0.828 37 H 0.097 0.903 38 H 0.101 0.899 39 H 0.225 0.775 40 H 0.238 0.762 41 H 0.148 0.852 42 H 0.091 0.909 43 H 0.120 0.880 44 H 0.140 0.860 45 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -19.883 3.830 -12.045 23.560 hybrid contribution -1.058 0.740 2.444 2.764 sum -20.941 4.570 -9.601 23.486 Atomic orbital electron populations 1.21684 0.79037 1.02906 1.01588 1.46274 1.05371 1.03204 1.79115 1.21790 0.97937 0.84533 1.01493 1.18053 0.91250 0.86241 0.90725 1.21678 1.01229 0.92064 1.12589 1.22491 0.89419 0.97406 0.92357 1.67582 1.08931 1.29785 1.15946 1.20966 0.95874 0.87957 0.93544 1.19820 0.87190 1.02996 0.82969 1.45044 1.06148 1.80596 1.08688 1.16013 0.82390 0.78913 0.83320 1.91012 1.46770 1.53691 1.48917 1.42529 1.07019 1.74120 1.07809 1.17975 0.82695 0.96863 0.89614 1.21577 0.98496 1.14473 0.92106 1.17579 0.90326 0.85534 0.93031 1.19551 1.02829 1.36249 0.90132 0.90105 1.25933 0.93961 0.92552 1.01812 1.69753 1.10793 1.26110 1.35663 0.86224 0.78810 0.79998 0.81162 1.19460 1.20147 1.18465 1.21697 0.99142 1.15551 0.94153 1.21490 0.91272 0.96416 0.94403 1.67219 1.00202 1.23662 1.35800 1.21560 0.92828 0.99887 1.11414 0.92969 0.91238 0.91075 0.90052 0.92156 0.92457 0.85013 0.82778 0.90293 0.89874 0.77514 0.76181 0.85215 0.90927 0.88031 0.86009 0.84569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.43 10.39 59.85 0.62 1.06 16 2 N -0.63 -4.63 3.39 -187.35 -0.64 -5.27 16 3 C 0.09 0.50 10.60 59.85 0.63 1.14 16 4 C 0.25 2.32 6.56 -83.61 -0.55 1.77 16 5 C -0.25 -2.14 9.31 -39.25 -0.37 -2.51 16 6 C 0.14 1.36 11.17 -17.61 -0.20 1.16 16 7 N -0.51 -6.33 10.27 -9.57 -0.10 -6.42 16 8 C 0.15 1.85 6.14 -82.65 -0.51 1.34 16 9 C 0.20 2.68 5.98 -5.19 -0.03 2.65 16 10 N -0.75 -11.31 5.55 -66.42 -0.37 -11.68 16 11 C 0.69 14.03 8.52 -86.92 -0.74 13.29 16 12 O -0.53 -13.00 14.60 5.30 0.08 -12.92 16 13 N -0.67 -13.73 5.40 -15.86 -0.09 -13.81 16 14 C 0.35 8.87 7.42 -154.68 -1.15 7.72 16 15 C -0.24 -6.22 8.60 -38.46 -0.33 -6.55 16 16 C 0.14 3.84 5.59 -106.55 -0.60 3.25 16 17 C -0.46 -11.86 9.13 -37.65 -0.34 -12.21 16 18 H 0.08 2.01 7.86 -52.49 -0.41 1.60 16 19 C 0.08 1.84 5.31 -17.34 -0.09 1.74 16 20 N -0.80 -19.90 10.78 55.55 0.60 -19.30 16 21 Si 0.91 18.20 29.57 -169.99 -5.03 13.18 16 22 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 23 H -0.28 -5.37 7.11 56.52 0.40 -4.96 16 24 H -0.26 -5.16 7.11 56.52 0.40 -4.76 16 25 C -0.28 -7.04 9.85 -39.07 -0.38 -7.42 16 26 C 0.12 2.91 11.10 -18.05 -0.20 2.71 16 27 N -0.55 -14.49 7.86 -12.76 -0.10 -14.59 16 28 C -0.23 -2.40 8.93 -39.25 -0.35 -2.75 16 29 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 30 H 0.07 0.23 8.07 -51.93 -0.42 -0.19 16 31 H 0.07 0.29 6.05 -51.93 -0.31 -0.02 16 32 H 0.08 0.50 5.48 -51.93 -0.28 0.22 16 33 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 34 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 35 H 0.13 0.80 6.16 -52.48 -0.32 0.48 16 36 H 0.15 1.08 8.06 -52.48 -0.42 0.65 16 37 H 0.08 1.05 8.04 -51.92 -0.42 0.64 16 38 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 39 H 0.39 5.08 8.48 -40.82 -0.35 4.73 16 40 H 0.40 6.89 8.72 -40.82 -0.36 6.53 16 41 H 0.13 3.33 6.22 -52.49 -0.33 3.00 16 42 H 0.28 6.34 8.29 -40.82 -0.34 6.00 16 43 H 0.10 2.32 8.06 -52.49 -0.42 1.90 16 44 H 0.12 2.63 8.06 -52.48 -0.42 2.21 16 45 H 0.14 1.27 5.97 -52.48 -0.31 0.95 16 LS Contribution 379.44 15.07 5.72 5.72 Total: -1.00 -34.18 379.44 -10.11 -44.29 By element: Atomic # 1 Polarization: 20.04 SS G_CDS: -5.61 Total: 14.43 kcal Atomic # 6 Polarization: 10.96 SS G_CDS: -4.58 Total: 6.38 kcal Atomic # 7 Polarization: -70.38 SS G_CDS: -0.69 Total: -71.07 kcal Atomic # 8 Polarization: -13.00 SS G_CDS: 0.08 Total: -12.92 kcal Atomic # 14 Polarization: 18.20 SS G_CDS: -5.03 Total: 13.18 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.18 -10.11 -44.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932165422.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.790 kcal (2) G-P(sol) polarization free energy of solvation -34.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds