Wall clock time and date at job start Sat Apr 11 2020 06:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 N 1.40090 * 126.03355 * 2 1 4 4 C 1.30841 * 108.20324 * 180.02562 * 3 2 1 5 5 C 1.50692 * 125.89927 * 179.97438 * 4 3 2 6 6 N 1.46503 * 109.47114 * 275.02522 * 5 4 3 7 7 C 1.34784 * 119.99777 * 179.97438 * 6 5 4 8 8 O 1.21569 * 120.00075 * 0.02562 * 7 6 5 9 9 N 1.34779 * 119.99810 * 179.97438 * 7 6 5 10 10 C 1.39244 * 119.99884 * 185.79278 * 9 7 6 11 11 C 1.39680 * 119.57925 * 18.77204 * 10 9 7 12 12 C 1.38641 * 119.49708 * 179.97438 * 11 10 9 13 13 C 1.38354 * 118.67146 * 359.73015 * 12 11 10 14 14 C 1.40573 * 119.12950 * 0.51201 * 13 12 11 15 15 C 1.41327 * 119.78618 * 179.75324 * 14 13 12 16 16 H 1.08001 * 120.00023 * 8.65547 * 15 14 13 17 17 C 1.40030 * 120.00016 * 188.66014 * 15 14 13 18 18 N 1.30743 * 120.00004 * 195.96340 * 17 15 14 19 19 Si 1.86800 * 119.99913 * 15.96271 * 17 15 14 20 20 H 1.48494 * 109.46996 * 269.99954 * 19 17 15 21 21 H 1.48506 * 109.46904 * 30.00034 * 19 17 15 22 22 H 1.48492 * 109.47131 * 149.99955 * 19 17 15 23 23 N 1.31903 * 119.57143 * 198.75141 * 10 9 7 24 24 C 1.39872 * 108.20034 * 0.24020 * 4 3 2 25 25 C 1.34949 * 126.03863 * 179.97438 * 2 1 3 26 26 C 1.50697 * 126.12720 * 0.02562 * 25 2 1 27 27 C 1.52994 * 117.49946 * 213.74562 * 26 25 2 28 28 C 1.53002 * 117.49832 * 145.08562 * 26 25 2 29 29 H 1.09002 * 109.47235 * 90.02356 * 1 2 3 30 30 H 1.08999 * 109.46981 * 210.02456 * 1 2 3 31 31 H 1.08995 * 109.47563 * 330.02567 * 1 2 3 32 32 H 1.09000 * 109.47647 * 155.02543 * 5 4 3 33 33 H 1.09003 * 109.47204 * 35.02174 * 5 4 3 34 34 H 0.96993 * 120.00321 * 0.02562 * 6 5 4 35 35 H 0.97001 * 119.99723 * 5.79149 * 9 7 6 36 36 H 1.08007 * 120.24719 * 359.97438 * 11 10 9 37 37 H 1.08008 * 120.66254 * 179.97438 * 12 11 10 38 38 H 1.07998 * 120.43494 * 180.28819 * 13 12 11 39 39 H 0.97002 * 119.99686 * 354.92627 * 18 17 15 40 40 H 1.07997 * 126.03889 * 179.71553 * 24 4 3 41 41 H 1.09000 * 115.54982 * 359.41509 * 26 25 2 42 42 H 1.08995 * 117.49622 * 359.97438 * 27 26 25 43 43 H 1.09006 * 117.49990 * 145.01856 * 27 26 25 44 44 H 1.09001 * 117.49453 * 214.97997 * 28 26 25 45 45 H 1.08991 * 117.49806 * 359.97372 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1329 0.0000 4 6 3.5346 0.7322 -0.0006 5 6 4.7496 1.6237 -0.0013 6 7 5.0710 2.0099 -1.3775 7 6 6.1262 2.8117 -1.6234 8 8 6.8114 3.2139 -0.7033 9 7 6.4222 3.1666 -2.8894 10 6 7.5793 3.8938 -3.1561 11 6 8.6111 3.9176 -2.2149 12 6 9.7626 4.6418 -2.4824 13 6 9.8565 5.3189 -3.6853 14 6 8.7817 5.2601 -4.5893 15 6 8.8607 5.9508 -5.8198 16 1 9.7920 6.4040 -6.1259 17 6 7.7314 6.0475 -6.6422 18 7 7.8630 6.3992 -7.8946 19 14 6.0371 5.6740 -5.9499 20 1 5.7367 4.2308 -6.1285 21 1 6.0081 6.0105 -4.5038 22 1 5.0199 6.4838 -6.6671 23 7 7.6872 4.5510 -4.2947 24 6 3.5437 -0.6664 -0.0065 25 6 2.2589 -1.0912 0.0005 26 6 1.7974 -2.5258 0.0006 27 6 2.6550 -3.5437 0.7549 28 6 2.6407 -3.5393 -0.7757 29 1 -0.3634 -0.0004 -1.0277 30 1 -0.3633 -0.8898 0.5142 31 1 -0.3634 0.8901 0.5134 32 1 5.5939 1.0878 0.4322 33 1 4.5449 2.5173 0.5884 34 1 4.5241 1.6893 -2.1115 35 1 5.8292 2.9153 -3.6148 36 1 8.5124 3.3760 -1.2857 37 1 10.5718 4.6736 -1.7678 38 1 10.7425 5.8880 -3.9250 39 1 8.7317 6.6643 -8.2352 40 1 4.4210 -1.2962 -0.0127 41 1 0.7173 -2.6721 0.0103 42 1 3.5532 -3.1759 1.2508 43 1 2.1391 -4.3600 1.2607 44 1 2.1154 -4.3526 -1.2764 45 1 3.5290 -3.1683 -1.2868 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932424329.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:28 Heat of formation + Delta-G solvation = 109.892887 kcal Electronic energy + Delta-G solvation = -28049.251083 eV Core-core repulsion = 24069.396803 eV Total energy + Delta-G solvation = -3979.854280 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.76192 -40.20038 -38.26456 -37.58108 -35.39330 -34.40357 -33.53757 -33.14361 -30.99122 -30.25932 -29.60340 -28.15181 -25.60394 -25.15049 -23.92002 -22.89914 -22.26892 -21.63949 -20.54635 -20.17277 -19.63523 -18.62393 -17.86199 -17.50482 -16.77354 -15.93579 -15.66067 -15.49760 -15.12917 -14.90544 -14.87380 -14.55126 -14.21460 -13.98245 -13.75015 -13.26758 -13.25819 -13.03096 -12.91758 -12.65077 -12.46310 -12.17002 -12.07120 -12.01561 -11.79948 -11.47112 -11.22482 -11.15249 -10.83737 -10.76920 -10.26133 -9.92602 -9.73677 -9.52305 -9.26617 -9.04921 -8.98267 -8.79723 -8.43752 -7.83689 -7.30632 -7.20599 -4.68874 1.37492 2.05510 2.15001 2.48641 2.75673 3.03902 3.42953 3.47339 3.52374 3.69177 3.87941 3.95187 4.06577 4.30783 4.38519 4.38692 4.43059 4.44235 4.59503 4.67192 4.75090 4.99896 5.05036 5.12910 5.13805 5.36476 5.41681 5.54728 5.58954 5.60061 5.62064 5.88526 5.91675 6.17152 6.25624 6.36026 6.50639 6.61480 6.62351 6.75293 6.97820 7.25467 7.37432 7.41428 7.50544 7.70640 7.84592 7.98781 8.27223 8.40744 8.70578 8.82330 9.52306 10.03409 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.015764 B = 0.002299 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1775.735592 B =12175.181811 C =12929.093162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.368 5.368 3 N -0.273 5.273 4 C 0.060 3.940 5 C 0.225 3.775 6 N -0.740 5.740 7 C 0.713 3.287 8 O -0.563 6.563 9 N -0.666 5.666 10 C 0.401 3.599 11 C -0.309 4.309 12 C -0.036 4.036 13 C -0.281 4.281 14 C 0.276 3.724 15 C -0.483 4.483 16 H 0.083 0.917 17 C 0.050 3.950 18 N -0.806 5.806 19 Si 1.143 2.857 20 H -0.289 1.289 21 H -0.279 1.279 22 H -0.328 1.328 23 N -0.597 5.597 24 C -0.255 4.255 25 C 0.117 3.883 26 C -0.109 4.109 27 C -0.159 4.159 28 C -0.158 4.158 29 H 0.076 0.924 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.398 0.602 35 H 0.403 0.597 36 H 0.141 0.859 37 H 0.105 0.895 38 H 0.104 0.896 39 H 0.284 0.716 40 H 0.149 0.851 41 H 0.115 0.885 42 H 0.103 0.897 43 H 0.102 0.898 44 H 0.102 0.898 45 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.570 -20.000 14.783 29.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.150 5.150 3 N -0.096 5.096 4 C -0.106 4.106 5 C 0.099 3.901 6 N -0.398 5.398 7 C 0.412 3.588 8 O -0.439 6.439 9 N -0.313 5.313 10 C 0.169 3.831 11 C -0.334 4.334 12 C -0.060 4.060 13 C -0.304 4.304 14 C 0.152 3.848 15 C -0.515 4.515 16 H 0.101 0.899 17 C -0.172 4.172 18 N -0.428 5.428 19 Si 0.977 3.023 20 H -0.216 1.216 21 H -0.207 1.207 22 H -0.261 1.261 23 N -0.322 5.322 24 C -0.284 4.284 25 C -0.010 4.010 26 C -0.129 4.129 27 C -0.197 4.197 28 C -0.196 4.196 29 H 0.095 0.905 30 H 0.104 0.896 31 H 0.110 0.890 32 H 0.107 0.893 33 H 0.101 0.899 34 H 0.232 0.768 35 H 0.238 0.762 36 H 0.159 0.841 37 H 0.123 0.877 38 H 0.122 0.878 39 H 0.095 0.905 40 H 0.166 0.834 41 H 0.133 0.867 42 H 0.122 0.878 43 H 0.120 0.880 44 H 0.121 0.879 45 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -18.037 -18.743 14.580 29.819 hybrid contribution 2.226 -0.738 0.083 2.347 sum -15.810 -19.481 14.663 29.060 Atomic orbital electron populations 1.21876 0.74240 1.04509 1.03578 1.48412 1.06533 1.03130 1.56951 1.77448 1.01256 1.07111 1.23746 1.22173 0.93103 0.93868 1.01441 1.19300 0.91059 0.96719 0.83002 1.45021 1.32017 1.53714 1.09028 1.15616 0.80980 0.79213 0.82955 1.90853 1.51245 1.58481 1.43345 1.42302 1.25198 1.56115 1.07712 1.17783 0.84072 0.89853 0.91398 1.21551 0.95195 1.13112 1.03514 1.20915 0.95807 0.94021 0.95303 1.21589 1.01741 1.10152 0.96884 1.18167 0.85871 0.88517 0.92248 1.20631 0.99401 1.29910 1.01588 0.89872 1.27633 1.07122 0.90044 0.92409 1.70619 1.29795 1.28939 1.13491 0.82132 0.69868 0.75864 0.74484 1.21609 1.20654 1.26055 1.66129 1.27907 1.17519 1.20645 1.21052 0.96310 0.94180 1.16874 1.20139 0.90764 0.88685 1.01405 1.20430 0.98277 0.85567 1.08642 1.23103 1.01800 0.99934 0.94860 1.23109 1.01959 0.99972 0.94571 0.90525 0.89554 0.89036 0.89256 0.89919 0.76833 0.76221 0.84119 0.87708 0.87798 0.90520 0.83357 0.86735 0.87836 0.87971 0.87934 0.87785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.53 11.22 59.85 0.67 1.20 16 2 N -0.37 -3.50 4.01 -63.89 -0.26 -3.75 16 3 N -0.27 -3.34 12.58 33.67 0.42 -2.92 16 4 C 0.06 0.68 6.59 -82.41 -0.54 0.14 16 5 C 0.23 2.70 6.23 -5.20 -0.03 2.67 16 6 N -0.74 -9.91 5.55 -66.42 -0.37 -10.28 16 7 C 0.71 12.71 8.40 -86.91 -0.73 11.98 16 8 O -0.56 -11.73 13.14 5.30 0.07 -11.66 16 9 N -0.67 -12.95 5.42 -15.79 -0.09 -13.04 16 10 C 0.40 9.53 7.51 -155.00 -1.16 8.37 16 11 C -0.31 -7.21 8.83 -38.89 -0.34 -7.56 16 12 C -0.04 -0.82 10.15 -39.39 -0.40 -1.22 16 13 C -0.28 -6.91 9.83 -38.66 -0.38 -7.29 16 14 C 0.28 7.45 6.27 -85.00 -0.53 6.92 16 15 C -0.48 -13.42 9.51 -37.74 -0.36 -13.78 16 16 H 0.08 2.30 8.06 -52.49 -0.42 1.88 16 17 C 0.05 1.37 5.51 -17.34 -0.10 1.27 16 18 N -0.81 -22.21 13.65 55.55 0.76 -21.45 16 19 Si 1.14 28.32 25.93 -169.99 -4.41 23.91 16 20 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 21 H -0.28 -7.15 6.55 56.52 0.37 -6.78 16 22 H -0.33 -7.98 7.11 56.52 0.40 -7.58 16 23 N -0.60 -15.54 5.07 -10.26 -0.05 -15.59 16 24 C -0.25 -2.45 9.74 -40.01 -0.39 -2.84 16 25 C 0.12 1.01 6.62 -82.26 -0.54 0.47 16 26 C -0.11 -0.62 5.97 -91.78 -0.55 -1.16 16 27 C -0.16 -0.73 10.05 -26.70 -0.27 -1.00 16 28 C -0.16 -0.77 10.05 -26.69 -0.27 -1.03 16 29 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.09 0.25 7.22 -51.93 -0.37 -0.13 16 31 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 34 H 0.40 4.60 8.48 -40.82 -0.35 4.26 16 35 H 0.40 6.90 8.84 -40.82 -0.36 6.53 16 36 H 0.14 3.23 5.33 -52.50 -0.28 2.95 16 37 H 0.10 2.03 8.06 -52.48 -0.42 1.60 16 38 H 0.10 2.38 8.06 -52.49 -0.42 1.96 16 39 H 0.28 7.48 8.73 -40.82 -0.36 7.12 16 40 H 0.15 1.20 8.06 -52.49 -0.42 0.78 16 41 H 0.11 0.46 7.24 -51.93 -0.38 0.08 16 42 H 0.10 0.52 7.94 -51.93 -0.41 0.11 16 43 H 0.10 0.33 8.14 -51.93 -0.42 -0.10 16 44 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 45 H 0.10 0.58 7.95 -51.93 -0.41 0.16 16 LS Contribution 381.40 15.07 5.75 5.75 Total: -1.00 -34.31 381.40 -10.07 -44.38 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: -5.97 Total: 7.53 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: -5.93 Total: -2.87 kcal Atomic # 7 Polarization: -67.46 SS G_CDS: 0.42 Total: -67.04 kcal Atomic # 8 Polarization: -11.73 SS G_CDS: 0.07 Total: -11.66 kcal Atomic # 14 Polarization: 28.32 SS G_CDS: -4.41 Total: 23.91 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.31 -10.07 -44.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932424329.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.278 kcal (2) G-P(sol) polarization free energy of solvation -34.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.385 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.893 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds