Wall clock time and date at job start Sat Apr 11 2020 06:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.40079 * 126.04232 * 2 1 4 4 C 1.30837 * 108.20995 * 180.02562 * 3 2 1 5 5 C 1.50699 * 125.90118 * 180.02562 * 4 3 2 6 6 C 1.53000 * 117.49688 * 163.77355 * 5 4 3 7 7 C 1.52997 * 117.49567 * 95.11433 * 5 4 3 8 8 C 1.39871 * 108.19590 * 359.78045 * 4 3 2 9 9 C 1.34952 * 126.03027 * 180.02562 * 2 1 3 10 10 C 1.50692 * 126.13094 * 359.94028 * 9 2 1 11 11 N 1.46503 * 109.47114 * 275.00271 * 10 9 2 12 12 C 1.34784 * 119.99777 * 179.97438 * 11 10 9 13 13 O 1.21569 * 120.00075 * 0.02562 * 12 11 10 14 14 N 1.34779 * 119.99810 * 179.97438 * 12 11 10 15 15 C 1.39244 * 119.99884 * 185.79278 * 14 12 11 16 16 C 1.39680 * 119.57925 * 18.77204 * 15 14 12 17 17 C 1.38641 * 119.49708 * 179.97438 * 16 15 14 18 18 C 1.38354 * 118.67146 * 359.73015 * 17 16 15 19 19 C 1.40573 * 119.12950 * 0.51201 * 18 17 16 20 20 C 1.41327 * 119.78618 * 179.75324 * 19 18 17 21 21 H 1.08001 * 120.00023 * 8.65547 * 20 19 18 22 22 C 1.40030 * 120.00016 * 188.66014 * 20 19 18 23 23 N 1.30743 * 120.00004 * 195.96340 * 22 20 19 24 24 Si 1.86800 * 119.99913 * 15.96271 * 22 20 19 25 25 H 1.48494 * 109.46996 * 269.99954 * 24 22 20 26 26 H 1.48506 * 109.46904 * 30.00034 * 24 22 20 27 27 H 1.48492 * 109.47131 * 149.99955 * 24 22 20 28 28 N 1.31903 * 119.57143 * 198.75141 * 15 14 12 29 29 H 1.09000 * 109.47443 * 269.97573 * 1 2 3 30 30 H 1.09009 * 109.46764 * 29.97205 * 1 2 3 31 31 H 1.08995 * 109.47596 * 149.97296 * 1 2 3 32 32 H 1.08999 * 115.54737 * 309.44307 * 5 4 3 33 33 H 1.08999 * 117.50029 * 359.97438 * 6 5 4 34 34 H 1.09000 * 117.49718 * 145.01767 * 6 5 4 35 35 H 1.09003 * 117.49289 * 214.97521 * 7 5 4 36 36 H 1.08998 * 117.50605 * 359.97438 * 7 5 4 37 37 H 1.08009 * 126.03959 * 180.23112 * 8 4 3 38 38 H 1.09000 * 109.47647 * 155.00292 * 10 9 2 39 39 H 1.09003 * 109.47204 * 34.99923 * 10 9 2 40 40 H 0.96993 * 120.00321 * 0.02562 * 11 10 9 41 41 H 0.97001 * 119.99723 * 5.79149 * 14 12 11 42 42 H 1.08007 * 120.24719 * 359.97438 * 16 15 14 43 43 H 1.08008 * 120.66254 * 179.97438 * 17 16 15 44 44 H 1.07998 * 120.43494 * 180.28819 * 18 17 16 45 45 H 0.97002 * 119.99686 * 354.92627 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2892 1.1327 0.0000 4 6 3.5347 0.7320 -0.0006 5 6 4.7498 1.6234 -0.0002 6 6 6.0902 0.9904 0.3783 7 6 5.3911 1.9428 1.3516 8 6 3.5436 -0.6667 0.0042 9 6 2.2588 -1.0914 -0.0005 10 6 1.7972 -2.5258 0.0001 11 7 1.5341 -2.9536 1.3764 12 6 1.1074 -4.2082 1.6222 13 8 0.9413 -4.9851 0.7020 14 7 0.8659 -4.6019 2.8884 15 6 0.5421 -5.9297 3.1549 16 6 0.8445 -6.9156 2.2127 17 6 0.5219 -8.2372 2.4801 18 6 -0.0892 -8.5409 3.6836 19 6 -0.3723 -7.5030 4.5884 20 6 -1.0010 -7.7969 5.8196 21 1 -1.1361 -8.8239 6.1253 22 6 -1.4488 -6.7566 6.6430 23 7 -1.7393 -6.9932 7.8956 24 14 -1.6309 -5.0308 5.9518 25 1 -0.3565 -4.2895 6.1291 26 1 -1.9611 -5.1090 4.5060 27 1 -2.7200 -4.3221 6.6706 28 7 -0.0459 -6.2404 4.2940 29 1 -0.3634 -0.0004 1.0276 30 1 -0.3633 0.8903 -0.5135 31 1 -0.3634 -0.8897 -0.5142 32 1 4.7590 2.4058 -0.7591 33 1 6.0932 -0.0707 0.6275 34 1 6.9815 1.3565 -0.1314 35 1 5.8228 2.9352 1.4819 36 1 4.9341 1.5086 2.2408 37 1 4.4210 -1.2966 0.0085 38 1 2.5721 -3.1572 -0.4347 39 1 0.8840 -2.6139 -0.5885 40 1 1.6662 -2.3337 2.1106 41 1 0.9176 -3.9602 3.6140 42 1 1.3261 -6.6503 1.2831 43 1 0.7468 -9.0146 1.7648 44 1 -0.3488 -9.5615 3.9231 45 1 -1.7157 -7.9013 8.2357 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932425124.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:31 Heat of formation + Delta-G solvation = 109.611723 kcal Electronic energy + Delta-G solvation = -28286.796382 eV Core-core repulsion = 24306.929910 eV Total energy + Delta-G solvation = -3979.866472 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.74411 -40.32840 -38.35746 -37.51126 -35.28277 -34.50900 -33.52259 -33.19170 -31.16756 -31.05037 -29.32865 -27.20555 -26.45831 -25.27681 -23.52725 -22.75096 -22.36909 -21.72816 -20.60091 -20.26163 -19.60297 -18.73150 -17.95664 -17.39006 -16.54789 -16.17210 -15.84725 -15.66987 -15.13266 -14.94468 -14.68922 -14.64795 -14.35070 -14.11728 -13.83430 -13.41159 -13.06461 -13.05117 -12.90327 -12.75709 -12.49899 -12.24763 -12.12457 -11.87953 -11.82990 -11.26198 -11.22560 -10.97545 -10.90568 -10.56198 -10.35020 -10.01818 -9.82742 -9.56511 -9.37408 -9.21154 -9.08972 -8.84156 -8.51630 -7.91687 -7.39663 -7.27659 -4.75708 1.33871 2.10584 2.26905 2.38729 2.68021 2.82522 3.33625 3.44453 3.48513 3.60471 3.87371 3.98186 4.11622 4.25048 4.31325 4.49506 4.55154 4.59650 4.61346 4.80364 4.84591 4.99464 5.11586 5.24169 5.30620 5.32744 5.38302 5.53095 5.54226 5.73854 5.78154 5.82775 5.86395 6.07256 6.14219 6.29226 6.40178 6.55053 6.60775 6.65409 6.83406 7.16176 7.31844 7.39889 7.44031 7.62516 7.76131 7.86784 8.17137 8.32854 8.60906 8.69079 9.44013 9.96921 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014801 B = 0.002431 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.262806 B =11514.870462 C =12076.843174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.362 5.362 3 N -0.282 5.282 4 C 0.100 3.900 5 C -0.081 4.081 6 C -0.165 4.165 7 C -0.165 4.165 8 C -0.241 4.241 9 C 0.065 3.935 10 C 0.207 3.793 11 N -0.745 5.745 12 C 0.712 3.288 13 O -0.561 6.561 14 N -0.665 5.665 15 C 0.399 3.601 16 C -0.310 4.310 17 C -0.036 4.036 18 C -0.280 4.280 19 C 0.276 3.724 20 C -0.482 4.482 21 H 0.084 0.916 22 C 0.049 3.951 23 N -0.805 5.805 24 Si 1.144 2.856 25 H -0.289 1.289 26 H -0.280 1.280 27 H -0.327 1.327 28 N -0.597 5.597 29 H 0.078 0.922 30 H 0.091 0.909 31 H 0.090 0.910 32 H 0.119 0.881 33 H 0.100 0.900 34 H 0.101 0.899 35 H 0.100 0.900 36 H 0.096 0.904 37 H 0.150 0.850 38 H 0.096 0.904 39 H 0.080 0.920 40 H 0.398 0.602 41 H 0.403 0.597 42 H 0.141 0.859 43 H 0.105 0.895 44 H 0.104 0.896 45 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.275 16.581 -14.136 24.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.145 5.145 3 N -0.104 5.104 4 C -0.065 4.065 5 C -0.101 4.101 6 C -0.202 4.202 7 C -0.203 4.203 8 C -0.271 4.271 9 C -0.063 4.063 10 C 0.081 3.919 11 N -0.402 5.402 12 C 0.412 3.588 13 O -0.437 6.437 14 N -0.312 5.312 15 C 0.167 3.833 16 C -0.334 4.334 17 C -0.060 4.060 18 C -0.302 4.302 19 C 0.152 3.848 20 C -0.514 4.514 21 H 0.102 0.898 22 C -0.173 4.173 23 N -0.426 5.426 24 Si 0.978 3.022 25 H -0.216 1.216 26 H -0.207 1.207 27 H -0.260 1.260 28 N -0.322 5.322 29 H 0.097 0.903 30 H 0.109 0.891 31 H 0.109 0.891 32 H 0.137 0.863 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.118 0.882 36 H 0.115 0.885 37 H 0.168 0.832 38 H 0.114 0.886 39 H 0.098 0.902 40 H 0.232 0.768 41 H 0.238 0.762 42 H 0.158 0.842 43 H 0.123 0.877 44 H 0.123 0.877 45 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 8.591 18.920 -13.926 25.014 hybrid contribution 1.046 -2.498 -0.116 2.711 sum 9.637 16.422 -14.042 23.658 Atomic orbital electron populations 1.21950 0.73853 1.04736 1.03922 1.48491 1.06627 1.03073 1.56283 1.77333 1.01153 1.07363 1.24544 1.21334 0.92176 0.93006 0.99963 1.20128 0.89000 1.00483 1.00482 1.23034 0.94522 0.99694 1.02984 1.23006 1.03086 1.00926 0.93251 1.21160 0.96260 0.94308 1.15401 1.20993 0.91293 0.90066 1.03926 1.19543 1.02084 0.86935 0.83313 1.45098 1.73466 1.12881 1.08801 1.15624 0.78288 0.81824 0.83059 1.90868 1.57763 1.51707 1.43357 1.42296 1.70995 1.10311 1.07596 1.17768 0.92193 0.81820 0.91470 1.21526 1.16354 0.92087 1.03480 1.20917 0.94527 0.95251 0.95328 1.21601 1.12588 0.99226 0.96814 1.18162 0.89308 0.85098 0.92271 1.20647 1.32896 0.96366 1.01478 0.89820 1.27643 0.89228 1.08022 0.92419 1.70614 1.33186 1.25342 1.13493 0.82120 0.74990 0.70766 0.74365 1.21626 1.20750 1.25998 1.66124 1.23441 1.22041 1.20571 0.90311 0.89061 0.89121 0.86314 0.88114 0.88059 0.88194 0.88539 0.83216 0.88551 0.90167 0.76754 0.76187 0.84196 0.87676 0.87744 0.90442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.69 11.27 59.85 0.67 1.37 16 2 N -0.36 -3.64 4.01 -63.88 -0.26 -3.90 16 3 N -0.28 -3.29 12.57 33.67 0.42 -2.87 16 4 C 0.10 1.04 6.85 -82.41 -0.56 0.47 16 5 C -0.08 -0.64 6.33 -91.77 -0.58 -1.22 16 6 C -0.16 -1.02 10.02 -26.69 -0.27 -1.29 16 7 C -0.16 -1.13 10.24 -26.69 -0.27 -1.40 16 8 C -0.24 -2.33 10.02 -40.01 -0.40 -2.74 16 9 C 0.06 0.63 6.30 -82.27 -0.52 0.11 16 10 C 0.21 2.02 5.84 -5.20 -0.03 1.99 16 11 N -0.74 -8.42 5.55 -66.42 -0.37 -8.79 16 12 C 0.71 11.48 8.40 -86.91 -0.73 10.75 16 13 O -0.56 -10.78 13.14 5.30 0.07 -10.71 16 14 N -0.67 -12.02 5.42 -15.79 -0.09 -12.11 16 15 C 0.40 9.07 7.51 -155.00 -1.16 7.90 16 16 C -0.31 -6.94 8.83 -38.89 -0.34 -7.28 16 17 C -0.04 -0.79 10.15 -39.39 -0.40 -1.19 16 18 C -0.28 -6.68 9.83 -38.66 -0.38 -7.06 16 19 C 0.28 7.22 6.27 -85.00 -0.53 6.69 16 20 C -0.48 -13.06 9.51 -37.74 -0.36 -13.42 16 21 H 0.08 2.26 8.06 -52.49 -0.42 1.84 16 22 C 0.05 1.31 5.51 -17.34 -0.10 1.22 16 23 N -0.80 -21.70 13.65 55.55 0.76 -20.94 16 24 Si 1.14 27.37 25.93 -169.99 -4.41 22.96 16 25 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 26 H -0.28 -6.86 6.55 56.52 0.37 -6.49 16 27 H -0.33 -7.71 7.11 56.52 0.40 -7.31 16 28 N -0.60 -14.99 5.07 -10.26 -0.05 -15.04 16 29 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.09 0.56 8.14 -51.92 -0.42 0.14 16 31 H 0.09 0.54 7.15 -51.93 -0.37 0.17 16 32 H 0.12 0.85 8.14 -51.93 -0.42 0.43 16 33 H 0.10 0.63 7.14 -51.93 -0.37 0.26 16 34 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.10 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.15 1.22 7.38 -52.48 -0.39 0.83 16 38 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 39 H 0.08 0.77 7.24 -51.93 -0.38 0.39 16 40 H 0.40 3.83 8.48 -40.82 -0.35 3.49 16 41 H 0.40 6.37 8.84 -40.82 -0.36 6.01 16 42 H 0.14 3.07 5.33 -52.50 -0.28 2.79 16 43 H 0.11 1.96 8.06 -52.48 -0.42 1.54 16 44 H 0.10 2.33 8.06 -52.49 -0.42 1.90 16 45 H 0.28 7.35 8.73 -40.82 -0.36 6.99 16 LS Contribution 380.47 15.07 5.73 5.73 Total: -1.00 -32.83 380.47 -10.06 -42.89 By element: Atomic # 1 Polarization: 13.79 SS G_CDS: -5.90 Total: 7.88 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: -5.97 Total: -5.10 kcal Atomic # 7 Polarization: -64.07 SS G_CDS: 0.42 Total: -63.65 kcal Atomic # 8 Polarization: -10.78 SS G_CDS: 0.07 Total: -10.71 kcal Atomic # 14 Polarization: 27.37 SS G_CDS: -4.41 Total: 22.96 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.83 -10.06 -42.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932425124.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.498 kcal (2) G-P(sol) polarization free energy of solvation -32.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds