Wall clock time and date at job start Sat Apr 11 2020 06:22:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.40079 * 126.04232 * 2 1 4 4 C 1.30837 * 108.20995 * 180.02562 * 3 2 1 5 5 C 1.50699 * 125.90118 * 180.02562 * 4 3 2 6 6 C 1.53000 * 117.49688 * 163.77355 * 5 4 3 7 7 C 1.52997 * 117.49567 * 95.11433 * 5 4 3 8 8 C 1.39871 * 108.19590 * 359.78045 * 4 3 2 9 9 C 1.34952 * 126.03027 * 180.02562 * 2 1 3 10 10 C 1.50692 * 126.13094 * 359.94028 * 9 2 1 11 11 N 1.46503 * 109.47114 * 275.00271 * 10 9 2 12 12 C 1.34784 * 119.99777 * 179.97438 * 11 10 9 13 13 O 1.21569 * 120.00075 * 0.02562 * 12 11 10 14 14 N 1.34779 * 119.99810 * 179.97438 * 12 11 10 15 15 C 1.39244 * 119.99884 * 185.79278 * 14 12 11 16 16 C 1.39680 * 119.57925 * 18.77204 * 15 14 12 17 17 C 1.38641 * 119.49708 * 179.97438 * 16 15 14 18 18 C 1.38354 * 118.67146 * 359.73015 * 17 16 15 19 19 C 1.40573 * 119.12950 * 0.51201 * 18 17 16 20 20 C 1.41327 * 119.78618 * 179.75324 * 19 18 17 21 21 H 1.08001 * 120.00023 * 8.65547 * 20 19 18 22 22 C 1.40030 * 120.00016 * 188.66014 * 20 19 18 23 23 N 1.30743 * 120.00004 * 195.96340 * 22 20 19 24 24 Si 1.86800 * 119.99913 * 15.96271 * 22 20 19 25 25 H 1.48494 * 109.46996 * 269.99954 * 24 22 20 26 26 H 1.48506 * 109.46904 * 30.00034 * 24 22 20 27 27 H 1.48492 * 109.47131 * 149.99955 * 24 22 20 28 28 N 1.31903 * 119.57143 * 198.75141 * 15 14 12 29 29 H 1.09000 * 109.47443 * 269.97573 * 1 2 3 30 30 H 1.09009 * 109.46764 * 29.97205 * 1 2 3 31 31 H 1.08995 * 109.47596 * 149.97296 * 1 2 3 32 32 H 1.08999 * 115.54737 * 309.44307 * 5 4 3 33 33 H 1.08999 * 117.50029 * 359.97438 * 6 5 4 34 34 H 1.09000 * 117.49718 * 145.01767 * 6 5 4 35 35 H 1.09003 * 117.49289 * 214.97521 * 7 5 4 36 36 H 1.08998 * 117.50605 * 359.97438 * 7 5 4 37 37 H 1.08009 * 126.03959 * 180.23112 * 8 4 3 38 38 H 1.09000 * 109.47647 * 155.00292 * 10 9 2 39 39 H 1.09003 * 109.47204 * 34.99923 * 10 9 2 40 40 H 0.96993 * 120.00321 * 0.02562 * 11 10 9 41 41 H 0.97001 * 119.99723 * 5.79149 * 14 12 11 42 42 H 1.08007 * 120.24719 * 359.97438 * 16 15 14 43 43 H 1.08008 * 120.66254 * 179.97438 * 17 16 15 44 44 H 1.07998 * 120.43494 * 180.28819 * 18 17 16 45 45 H 0.97002 * 119.99686 * 354.92627 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2892 1.1327 0.0000 4 6 3.5347 0.7320 -0.0006 5 6 4.7498 1.6234 -0.0002 6 6 6.0902 0.9904 0.3783 7 6 5.3911 1.9428 1.3516 8 6 3.5436 -0.6667 0.0042 9 6 2.2588 -1.0914 -0.0005 10 6 1.7972 -2.5258 0.0001 11 7 1.5341 -2.9536 1.3764 12 6 1.1074 -4.2082 1.6222 13 8 0.9413 -4.9851 0.7020 14 7 0.8659 -4.6019 2.8884 15 6 0.5421 -5.9297 3.1549 16 6 0.8445 -6.9156 2.2127 17 6 0.5219 -8.2372 2.4801 18 6 -0.0892 -8.5409 3.6836 19 6 -0.3723 -7.5030 4.5884 20 6 -1.0010 -7.7969 5.8196 21 1 -1.1361 -8.8239 6.1253 22 6 -1.4488 -6.7566 6.6430 23 7 -1.7393 -6.9932 7.8956 24 14 -1.6309 -5.0308 5.9518 25 1 -0.3565 -4.2895 6.1291 26 1 -1.9611 -5.1090 4.5060 27 1 -2.7200 -4.3221 6.6706 28 7 -0.0459 -6.2404 4.2940 29 1 -0.3634 -0.0004 1.0276 30 1 -0.3633 0.8903 -0.5135 31 1 -0.3634 -0.8897 -0.5142 32 1 4.7590 2.4058 -0.7591 33 1 6.0932 -0.0707 0.6275 34 1 6.9815 1.3565 -0.1314 35 1 5.8228 2.9352 1.4819 36 1 4.9341 1.5086 2.2408 37 1 4.4210 -1.2966 0.0085 38 1 2.5721 -3.1572 -0.4347 39 1 0.8840 -2.6139 -0.5885 40 1 1.6662 -2.3337 2.1106 41 1 0.9176 -3.9602 3.6140 42 1 1.3261 -6.6503 1.2831 43 1 0.7468 -9.0146 1.7648 44 1 -0.3488 -9.5615 3.9231 45 1 -1.7157 -7.9013 8.2357 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932425124.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:30 Heat of formation + Delta-G solvation = 89.313894 kcal Electronic energy + Delta-G solvation = -28287.676562 eV Core-core repulsion = 24306.929910 eV Total energy + Delta-G solvation = -3980.746652 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.50062 -41.74248 -40.04064 -38.08819 -36.53356 -35.96929 -35.34780 -33.87247 -32.91822 -32.17865 -30.93224 -27.83491 -27.55262 -27.01844 -24.16414 -23.95083 -23.50338 -23.20828 -21.89603 -21.17895 -20.54690 -20.26377 -19.46794 -18.67922 -17.52273 -17.14602 -16.89062 -16.82106 -16.55560 -16.34453 -15.89061 -15.74188 -15.38927 -15.24599 -15.09743 -14.86677 -14.45966 -14.22407 -14.18779 -13.72498 -13.66623 -13.57465 -13.33316 -12.98129 -12.79528 -12.72235 -12.31061 -12.16152 -11.89942 -11.84640 -11.59170 -11.53095 -11.17568 -11.08277 -10.99867 -10.36651 -10.31995 -10.16279 -9.81884 -9.55952 -9.29970 -9.14297 -6.76936 0.51866 0.63146 0.81278 1.35522 1.48305 1.52015 1.65816 1.75527 1.97457 2.01021 2.40599 2.66398 2.94089 3.04209 3.27747 3.45850 3.61188 3.90852 4.00625 4.06988 4.10925 4.14924 4.30638 4.39118 4.41501 4.50301 4.63300 4.64315 4.67371 4.70440 4.73937 4.82593 4.83398 5.02129 5.10737 5.19628 5.24110 5.30740 5.36276 5.39938 5.46797 5.59165 5.65277 5.80902 5.94173 5.94983 6.05163 6.44317 6.62468 6.66035 6.79338 7.33138 7.56933 7.94947 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014801 B = 0.002431 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1891.262806 B =11514.870462 C =12076.843174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.366 5.366 3 N -0.313 5.313 4 C 0.093 3.907 5 C -0.098 4.098 6 C -0.151 4.151 7 C -0.165 4.165 8 C -0.247 4.247 9 C 0.065 3.935 10 C 0.211 3.789 11 N -0.721 5.721 12 C 0.716 3.284 13 O -0.590 6.590 14 N -0.663 5.663 15 C 0.392 3.608 16 C -0.305 4.305 17 C -0.029 4.029 18 C -0.297 4.297 19 C 0.259 3.741 20 C -0.513 4.513 21 H 0.068 0.932 22 C 0.020 3.980 23 N -0.827 5.827 24 Si 1.177 2.823 25 H -0.274 1.274 26 H -0.290 1.290 27 H -0.323 1.323 28 N -0.609 5.609 29 H 0.084 0.916 30 H 0.098 0.902 31 H 0.103 0.897 32 H 0.123 0.877 33 H 0.101 0.899 34 H 0.119 0.881 35 H 0.114 0.886 36 H 0.085 0.915 37 H 0.164 0.836 38 H 0.103 0.897 39 H 0.087 0.913 40 H 0.410 0.590 41 H 0.414 0.586 42 H 0.152 0.848 43 H 0.143 0.857 44 H 0.113 0.887 45 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.741 17.925 -16.074 26.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.149 5.149 3 N -0.136 5.136 4 C -0.072 4.072 5 C -0.118 4.118 6 C -0.189 4.189 7 C -0.203 4.203 8 C -0.277 4.277 9 C -0.063 4.063 10 C 0.086 3.914 11 N -0.378 5.378 12 C 0.416 3.584 13 O -0.468 6.468 14 N -0.311 5.311 15 C 0.159 3.841 16 C -0.329 4.329 17 C -0.053 4.053 18 C -0.319 4.319 19 C 0.134 3.866 20 C -0.546 4.546 21 H 0.086 0.914 22 C -0.197 4.197 23 N -0.450 5.450 24 Si 1.007 2.993 25 H -0.200 1.200 26 H -0.218 1.218 27 H -0.256 1.256 28 N -0.334 5.334 29 H 0.102 0.898 30 H 0.117 0.883 31 H 0.121 0.879 32 H 0.141 0.859 33 H 0.119 0.881 34 H 0.137 0.863 35 H 0.132 0.868 36 H 0.103 0.897 37 H 0.181 0.819 38 H 0.121 0.879 39 H 0.105 0.895 40 H 0.246 0.754 41 H 0.251 0.749 42 H 0.169 0.831 43 H 0.160 0.840 44 H 0.131 0.869 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 10.084 20.326 -15.866 27.687 hybrid contribution 0.690 -2.876 0.263 2.969 sum 10.774 17.450 -15.603 25.769 Atomic orbital electron populations 1.22172 0.72590 1.05771 1.04598 1.48719 1.07447 1.02757 1.55945 1.77294 1.02032 1.08500 1.25815 1.21739 0.92451 0.93720 0.99279 1.20252 0.89121 1.01031 1.01355 1.23124 0.94150 0.99610 1.01989 1.23046 1.03010 1.01895 0.92394 1.21405 0.96813 0.94334 1.15141 1.20959 0.91395 0.89842 1.04103 1.19618 1.02654 0.86972 0.82114 1.44920 1.71583 1.11254 1.10087 1.15645 0.78036 0.82798 0.81904 1.90836 1.59060 1.53016 1.43880 1.42229 1.70985 1.08978 1.08887 1.18072 0.91395 0.83876 0.90768 1.21879 1.15161 0.92322 1.03558 1.21325 0.92810 0.96176 0.95035 1.21763 1.13425 0.99278 0.97417 1.18342 0.89403 0.86352 0.92464 1.20634 1.35240 0.95835 1.02894 0.91401 1.28440 0.88785 1.10081 0.92399 1.70640 1.35261 1.25233 1.13887 0.81701 0.75616 0.68789 0.73216 1.19990 1.21765 1.25581 1.66102 1.23868 1.21716 1.21749 0.89770 0.88346 0.87873 0.85891 0.88103 0.86278 0.86818 0.89675 0.81871 0.87906 0.89518 0.75405 0.74906 0.83099 0.83967 0.86910 0.90769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.11 11.27 127.77 1.44 2.55 16 2 N -0.37 -6.75 4.01 -356.03 -1.43 -8.18 16 3 N -0.31 -7.00 12.57 -47.39 -0.60 -7.59 16 4 C 0.09 1.80 6.85 43.10 0.30 2.09 16 5 C -0.10 -1.41 6.33 -11.54 -0.07 -1.48 16 6 C -0.15 -1.54 10.02 30.62 0.31 -1.24 16 7 C -0.17 -2.01 10.24 30.62 0.31 -1.70 16 8 C -0.25 -4.30 10.02 21.99 0.22 -4.08 16 9 C 0.07 1.12 6.30 41.40 0.26 1.38 16 10 C 0.21 3.54 5.84 85.63 0.50 4.04 16 11 N -0.72 -14.24 5.55 -482.31 -2.68 -16.91 16 12 C 0.72 21.14 8.40 179.05 1.50 22.64 16 13 O -0.59 -21.04 13.14 -3.93 -0.05 -21.09 16 14 N -0.66 -22.39 5.42 -322.13 -1.75 -24.14 16 15 C 0.39 17.04 7.51 133.26 1.00 18.04 16 16 C -0.30 -12.90 8.83 22.71 0.20 -12.70 16 17 C -0.03 -1.21 10.15 22.39 0.23 -0.98 16 18 C -0.30 -13.90 9.83 22.87 0.22 -13.68 16 19 C 0.26 13.60 6.27 40.19 0.25 13.85 16 20 C -0.51 -28.52 9.51 23.46 0.22 -28.30 16 21 H 0.07 3.84 8.06 -2.91 -0.02 3.82 16 22 C 0.02 1.11 5.51 85.29 0.47 1.58 16 23 N -0.83 -45.61 13.65 21.84 0.30 -45.31 16 24 Si 1.18 55.28 25.93 68.60 1.78 57.05 16 25 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 26 H -0.29 -13.92 6.55 99.48 0.65 -13.27 16 27 H -0.32 -14.80 7.11 99.48 0.71 -14.09 16 28 N -0.61 -30.01 5.07 -186.38 -0.95 -30.95 16 29 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.10 1.07 8.14 -2.38 -0.02 1.05 16 31 H 0.10 1.01 7.15 -2.39 -0.02 0.99 16 32 H 0.12 1.62 8.14 -2.39 -0.02 1.60 16 33 H 0.10 1.03 7.14 -2.39 -0.02 1.01 16 34 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.16 2.26 7.38 -2.91 -0.02 2.24 16 38 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 39 H 0.09 1.41 7.24 -2.39 -0.02 1.40 16 40 H 0.41 6.66 8.48 -92.71 -0.79 5.87 16 41 H 0.41 12.07 8.84 -92.71 -0.82 11.25 16 42 H 0.15 6.16 5.33 -3.21 -0.02 6.14 16 43 H 0.14 4.77 8.06 -2.91 -0.02 4.74 16 44 H 0.11 4.98 8.06 -2.91 -0.02 4.95 16 45 H 0.28 15.07 8.73 -92.71 -0.81 14.26 16 Total: -1.00 -70.16 380.47 1.35 -68.81 By element: Atomic # 1 Polarization: 26.94 SS G_CDS: -0.65 Total: 26.29 kcal Atomic # 6 Polarization: -5.35 SS G_CDS: 7.37 Total: 2.02 kcal Atomic # 7 Polarization: -125.98 SS G_CDS: -7.10 Total: -133.08 kcal Atomic # 8 Polarization: -21.04 SS G_CDS: -0.05 Total: -21.09 kcal Atomic # 14 Polarization: 55.28 SS G_CDS: 1.78 Total: 57.05 kcal Total: -70.16 1.35 -68.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932425124.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.120 kcal (2) G-P(sol) polarization free energy of solvation -70.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.806 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.314 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds