Wall clock time and date at job start Sat Apr 11 2020 06:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46505 * 119.99500 * 2 1 4 4 C 1.39166 * 120.00478 * 179.97438 * 2 1 3 5 5 C 1.39497 * 120.86123 * 0.02562 * 4 2 1 6 6 C 1.37878 * 119.06816 * 179.97438 * 5 4 2 7 7 N 1.32011 * 120.83935 * 359.97438 * 6 5 4 8 8 C 1.31978 * 121.91315 * 0.02562 * 7 6 5 9 9 C 1.50708 * 119.57814 * 180.02562 * 8 7 6 10 10 N 1.46495 * 109.46682 * 274.99298 * 9 8 7 11 11 C 1.34779 * 119.99792 * 180.27476 * 10 9 8 12 12 O 1.21576 * 119.99814 * 359.72858 * 11 10 9 13 13 N 1.34775 * 119.99962 * 179.72606 * 11 10 9 14 14 C 1.39246 * 120.00085 * 174.85521 * 13 11 10 15 15 C 1.39683 * 119.57738 * 185.40408 * 14 13 11 16 16 C 1.38653 * 119.49170 * 179.72948 * 15 14 13 17 17 C 1.38354 * 118.67358 * 0.53837 * 16 15 14 18 18 C 1.40570 * 119.12776 * 359.72784 * 17 16 15 19 19 C 1.41335 * 119.78513 * 180.02562 * 18 17 16 20 20 H 1.07996 * 119.99937 * 359.97438 * 19 18 17 21 21 C 1.40030 * 119.99984 * 179.97438 * 19 18 17 22 22 N 1.30737 * 119.99937 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99678 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47259 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.46903 * 119.99894 * 23 21 19 26 26 H 1.48502 * 109.46642 * 239.99488 * 23 21 19 27 27 N 1.31906 * 119.57244 * 5.68412 * 14 13 11 28 28 C 1.37913 * 120.84414 * 0.27278 * 8 7 6 29 29 H 1.09009 * 109.47424 * 240.00117 * 1 2 3 30 30 H 1.08994 * 109.47742 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.46838 * 120.00620 * 1 2 3 32 32 H 1.08999 * 109.46797 * 269.99175 * 3 2 1 33 33 H 1.08995 * 109.47269 * 29.99859 * 3 2 1 34 34 H 1.09001 * 109.46669 * 149.99748 * 3 2 1 35 35 H 1.07996 * 120.46815 * 0.02562 * 5 4 2 36 36 H 1.08000 * 119.58044 * 179.97438 * 6 5 4 37 37 H 1.08997 * 109.46726 * 154.99979 * 9 8 7 38 38 H 1.08989 * 109.47234 * 34.99559 * 9 8 7 39 39 H 0.97003 * 120.00379 * 0.02562 * 10 9 8 40 40 H 0.97004 * 120.00098 * 354.86296 * 13 11 10 41 41 H 1.07993 * 120.25328 * 359.97438 * 15 14 13 42 42 H 1.08006 * 120.66006 * 180.24226 * 16 15 14 43 43 H 1.07994 * 120.43461 * 179.74688 * 17 16 15 44 44 H 0.97005 * 119.99927 * 180.02562 * 22 21 19 45 45 H 1.07993 * 120.47237 * 179.72726 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1609 -1.2052 0.0005 5 6 1.4817 -2.4236 0.0005 6 6 2.2082 -3.5955 0.0006 7 7 3.5282 -3.5734 0.0000 8 6 4.2070 -2.4416 0.0000 9 6 5.7136 -2.4778 -0.0012 10 7 6.1999 -2.6103 1.3744 11 6 7.5244 -2.6581 1.6192 12 8 8.3154 -2.5962 0.6981 13 7 7.9719 -2.7744 2.8852 14 6 9.3335 -2.9316 3.1306 15 6 9.7766 -3.1648 4.4346 16 6 11.1323 -3.3266 4.6762 17 6 12.0113 -3.2402 3.6113 18 6 11.5037 -2.9979 2.3230 19 6 12.3892 -2.9075 1.2251 20 1 13.4519 -3.0241 1.3775 21 6 11.8884 -2.6668 -0.0602 22 7 10.6018 -2.5262 -0.2447 23 14 13.0587 -2.5482 -1.5114 24 1 14.4533 -2.7426 -1.0398 25 1 12.7212 -3.5975 -2.5065 26 1 12.9316 -1.2094 -2.1414 27 7 10.1888 -2.8528 2.1296 28 6 3.5553 -1.2262 0.0062 29 1 -0.3634 -0.5138 0.8900 30 1 -0.3634 1.0276 -0.0005 31 1 -0.3633 -0.5139 -0.8900 32 1 2.3791 1.5834 -1.0277 33 1 1.6082 2.0284 0.5138 34 1 3.1497 1.1385 0.5139 35 1 0.4021 -2.4488 -0.0003 36 1 1.6909 -4.5435 0.0010 37 1 6.0988 -1.5552 -0.4354 38 1 6.0562 -3.3278 -0.5911 39 1 5.5687 -2.6600 2.1093 40 1 7.3454 -2.7488 3.6253 41 1 9.0683 -3.2225 5.2478 42 1 11.4952 -3.5116 5.6765 43 1 13.0734 -3.3576 3.7678 44 1 10.2548 -2.3598 -1.1352 45 1 4.1168 -0.3037 0.0105 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932425141.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:34 Heat of formation + Delta-G solvation = 87.741609 kcal Electronic energy + Delta-G solvation = -28481.645526 eV Core-core repulsion = 24500.830694 eV Total energy + Delta-G solvation = -3980.814832 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.55738 -39.30500 -37.70418 -37.22899 -34.56162 -33.79150 -32.89146 -31.51689 -31.37506 -30.19523 -29.12188 -28.59526 -26.42213 -25.53922 -25.15594 -22.84476 -21.97740 -21.15473 -20.74613 -19.72194 -18.06871 -17.65721 -16.99612 -16.84281 -16.16479 -15.63741 -15.51187 -14.99193 -14.89002 -14.48356 -14.42760 -14.35739 -14.27075 -13.72698 -13.43890 -13.33649 -13.10608 -12.90931 -12.74835 -12.71561 -12.56702 -12.27374 -11.85289 -11.75132 -11.43079 -11.09888 -10.86277 -10.80411 -10.55171 -10.38684 -9.83005 -9.61690 -9.47969 -9.31276 -8.95308 -8.94273 -8.37246 -7.98461 -7.86501 -7.12024 -6.84862 -6.02143 -4.30320 0.98278 1.36845 2.63468 2.91983 3.20949 3.24030 3.27486 3.31026 3.34595 3.88112 4.14437 4.24066 4.33233 4.45612 4.50267 4.81463 4.82506 4.88669 4.94044 5.04240 5.07664 5.14710 5.20317 5.23128 5.32425 5.52213 5.62868 5.77305 5.90918 6.11230 6.14029 6.18835 6.46962 6.56333 6.70027 6.74508 6.88591 6.93239 6.97252 7.03859 7.32693 7.45698 7.70880 7.83603 7.90041 8.06226 8.26304 8.39122 8.75864 8.89386 9.15202 9.69399 10.36371 10.58733 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013930 B = 0.002519 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.514986 B =11114.726784 C =12113.662444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.629 5.629 3 C 0.088 3.912 4 C 0.245 3.755 5 C -0.249 4.249 6 C 0.138 3.862 7 N -0.509 5.509 8 C 0.156 3.844 9 C 0.198 3.802 10 N -0.752 5.752 11 C 0.666 3.334 12 O -0.462 6.462 13 N -0.673 5.673 14 C 0.388 3.612 15 C -0.359 4.359 16 C -0.036 4.036 17 C -0.308 4.308 18 C 0.271 3.729 19 C -0.425 4.425 20 H 0.082 0.918 21 C 0.056 3.944 22 N -0.647 5.647 23 Si 0.894 3.106 24 H -0.263 1.263 25 H -0.276 1.276 26 H -0.276 1.276 27 N -0.471 5.471 28 C -0.230 4.230 29 H 0.056 0.944 30 H 0.075 0.925 31 H 0.056 0.944 32 H 0.052 0.948 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.129 0.871 36 H 0.154 0.846 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.384 0.616 40 H 0.394 0.606 41 H 0.090 0.910 42 H 0.095 0.905 43 H 0.095 0.905 44 H 0.271 0.729 45 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.657 5.753 -0.565 23.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.340 5.340 3 C -0.055 4.055 4 C 0.135 3.865 5 C -0.274 4.274 6 C -0.019 4.019 7 N -0.222 5.222 8 C 0.019 3.981 9 C 0.073 3.927 10 N -0.412 5.412 11 C 0.364 3.636 12 O -0.326 6.326 13 N -0.321 5.321 14 C 0.148 3.852 15 C -0.385 4.385 16 C -0.060 4.060 17 C -0.331 4.331 18 C 0.146 3.854 19 C -0.456 4.456 20 H 0.100 0.900 21 C -0.174 4.174 22 N -0.265 5.265 23 Si 0.718 3.282 24 H -0.187 1.187 25 H -0.201 1.201 26 H -0.202 1.202 27 N -0.189 5.189 28 C -0.255 4.255 29 H 0.075 0.925 30 H 0.094 0.906 31 H 0.075 0.925 32 H 0.071 0.929 33 H 0.088 0.912 34 H 0.092 0.908 35 H 0.147 0.853 36 H 0.171 0.829 37 H 0.095 0.905 38 H 0.100 0.900 39 H 0.216 0.784 40 H 0.227 0.773 41 H 0.108 0.892 42 H 0.113 0.887 43 H 0.113 0.887 44 H 0.083 0.917 45 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -21.983 5.412 -2.572 22.785 hybrid contribution -0.630 0.748 1.035 1.424 sum -22.613 6.160 -1.537 23.488 Atomic orbital electron populations 1.21653 0.79086 1.02711 1.01439 1.46282 1.05292 1.03240 1.79230 1.21763 0.97605 0.84426 1.01669 1.18026 0.91236 0.86113 0.91145 1.21615 1.00910 0.91966 1.12958 1.22490 0.89509 0.97391 0.92470 1.67607 1.08693 1.29855 1.15995 1.21058 0.96159 0.87797 0.93061 1.19755 0.85521 1.03222 0.84249 1.45142 1.05876 1.82573 1.07628 1.16371 0.82014 0.80586 0.84598 1.91388 1.51442 1.48812 1.40967 1.42536 1.06618 1.76209 1.06740 1.18342 0.83529 0.93250 0.90070 1.20434 0.95924 1.27330 0.94774 1.20537 0.92734 0.95899 0.96855 1.21610 0.98151 1.18745 0.94573 1.18404 0.88280 0.87882 0.90878 1.19595 0.94067 1.41085 0.90848 0.90009 1.26196 0.95452 0.95614 1.00090 1.70358 1.10936 1.22860 1.22371 0.86497 0.81613 0.78322 0.81745 1.18694 1.20111 1.20163 1.68699 1.01565 1.20680 1.27980 1.21535 0.92489 0.99900 1.11618 0.92539 0.90629 0.92544 0.92914 0.91223 0.90830 0.85274 0.82896 0.90468 0.90043 0.78365 0.77285 0.89216 0.88704 0.88653 0.91702 0.84727 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.47 9.44 59.84 0.56 1.04 16 2 N -0.63 -4.88 3.39 -187.35 -0.64 -5.52 16 3 C 0.09 0.55 10.19 59.85 0.61 1.16 16 4 C 0.25 2.45 6.58 -83.61 -0.55 1.90 16 5 C -0.25 -2.31 9.38 -39.24 -0.37 -2.68 16 6 C 0.14 1.46 11.17 -17.61 -0.20 1.26 16 7 N -0.51 -6.86 10.27 -9.57 -0.10 -6.96 16 8 C 0.16 2.05 6.14 -82.64 -0.51 1.55 16 9 C 0.20 3.02 5.98 -5.19 -0.03 2.99 16 10 N -0.75 -12.19 5.55 -66.42 -0.37 -12.56 16 11 C 0.67 14.26 8.52 -86.92 -0.74 13.52 16 12 O -0.46 -12.13 12.11 5.30 0.06 -12.07 16 13 N -0.67 -13.96 5.39 -15.79 -0.09 -14.04 16 14 C 0.39 9.81 7.43 -154.99 -1.15 8.66 16 15 C -0.36 -8.32 9.96 -38.89 -0.39 -8.71 16 16 C -0.04 -0.84 10.15 -39.39 -0.40 -1.24 16 17 C -0.31 -7.96 9.83 -38.66 -0.38 -8.34 16 18 C 0.27 7.82 6.55 -85.00 -0.56 7.26 16 19 C -0.43 -12.00 9.14 -37.73 -0.34 -12.34 16 20 H 0.08 2.16 7.85 -52.49 -0.41 1.75 16 21 C 0.06 1.51 5.50 -17.35 -0.10 1.42 16 22 N -0.65 -18.41 8.99 55.55 0.50 -17.91 16 23 Si 0.89 19.73 29.56 -169.99 -5.02 14.70 16 24 H -0.26 -5.68 7.11 56.52 0.40 -5.27 16 25 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 26 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 27 N -0.47 -13.62 5.74 -10.26 -0.06 -13.68 16 28 C -0.23 -2.59 8.87 -39.25 -0.35 -2.93 16 29 H 0.06 0.26 8.00 -51.92 -0.42 -0.15 16 30 H 0.07 0.25 7.79 -51.93 -0.40 -0.16 16 31 H 0.06 0.27 7.99 -51.93 -0.42 -0.15 16 32 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.07 0.30 7.92 -51.93 -0.41 -0.11 16 34 H 0.07 0.49 6.25 -51.93 -0.32 0.17 16 35 H 0.13 0.88 6.90 -52.49 -0.36 0.52 16 36 H 0.15 1.20 8.06 -52.49 -0.42 0.78 16 37 H 0.08 1.17 8.04 -51.93 -0.42 0.76 16 38 H 0.08 1.40 8.14 -51.94 -0.42 0.98 16 39 H 0.38 5.25 8.48 -40.82 -0.35 4.90 16 40 H 0.39 6.40 8.71 -40.82 -0.36 6.04 16 41 H 0.09 1.79 8.06 -52.49 -0.42 1.36 16 42 H 0.09 1.88 8.06 -52.48 -0.42 1.46 16 43 H 0.10 2.29 8.06 -52.49 -0.42 1.86 16 44 H 0.27 7.24 8.29 -40.82 -0.34 6.90 16 45 H 0.13 1.38 6.27 -52.49 -0.33 1.05 16 LS Contribution 378.15 15.07 5.70 5.70 Total: -1.00 -35.74 378.15 -10.76 -46.50 By element: Atomic # 1 Polarization: 17.20 SS G_CDS: -5.86 Total: 11.34 kcal Atomic # 6 Polarization: 9.39 SS G_CDS: -4.88 Total: 4.50 kcal Atomic # 7 Polarization: -69.93 SS G_CDS: -0.75 Total: -70.68 kcal Atomic # 8 Polarization: -12.13 SS G_CDS: 0.06 Total: -12.07 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.02 Total: 14.70 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -35.74 -10.76 -46.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932425141.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.239 kcal (2) G-P(sol) polarization free energy of solvation -35.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds