Wall clock time and date at job start Sat Apr 11 2020 06:22:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.46505 * 119.99500 * 2 1 4 4 C 1.39166 * 120.00478 * 179.97438 * 2 1 3 5 5 C 1.39497 * 120.86123 * 0.02562 * 4 2 1 6 6 C 1.37878 * 119.06816 * 179.97438 * 5 4 2 7 7 N 1.32011 * 120.83935 * 359.97438 * 6 5 4 8 8 C 1.31978 * 121.91315 * 0.02562 * 7 6 5 9 9 C 1.50708 * 119.57814 * 180.02562 * 8 7 6 10 10 N 1.46495 * 109.46682 * 274.99298 * 9 8 7 11 11 C 1.34779 * 119.99792 * 180.27476 * 10 9 8 12 12 O 1.21576 * 119.99814 * 359.72858 * 11 10 9 13 13 N 1.34775 * 119.99962 * 179.72606 * 11 10 9 14 14 C 1.39246 * 120.00085 * 174.85521 * 13 11 10 15 15 C 1.39683 * 119.57738 * 185.40408 * 14 13 11 16 16 C 1.38653 * 119.49170 * 179.72948 * 15 14 13 17 17 C 1.38354 * 118.67358 * 0.53837 * 16 15 14 18 18 C 1.40570 * 119.12776 * 359.72784 * 17 16 15 19 19 C 1.41335 * 119.78513 * 180.02562 * 18 17 16 20 20 H 1.07996 * 119.99937 * 359.97438 * 19 18 17 21 21 C 1.40030 * 119.99984 * 179.97438 * 19 18 17 22 22 N 1.30737 * 119.99937 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99678 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47259 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.46903 * 119.99894 * 23 21 19 26 26 H 1.48502 * 109.46642 * 239.99488 * 23 21 19 27 27 N 1.31906 * 119.57244 * 5.68412 * 14 13 11 28 28 C 1.37913 * 120.84414 * 0.27278 * 8 7 6 29 29 H 1.09009 * 109.47424 * 240.00117 * 1 2 3 30 30 H 1.08994 * 109.47742 * 0.02562 * 1 2 3 31 31 H 1.09002 * 109.46838 * 120.00620 * 1 2 3 32 32 H 1.08999 * 109.46797 * 269.99175 * 3 2 1 33 33 H 1.08995 * 109.47269 * 29.99859 * 3 2 1 34 34 H 1.09001 * 109.46669 * 149.99748 * 3 2 1 35 35 H 1.07996 * 120.46815 * 0.02562 * 5 4 2 36 36 H 1.08000 * 119.58044 * 179.97438 * 6 5 4 37 37 H 1.08997 * 109.46726 * 154.99979 * 9 8 7 38 38 H 1.08989 * 109.47234 * 34.99559 * 9 8 7 39 39 H 0.97003 * 120.00379 * 0.02562 * 10 9 8 40 40 H 0.97004 * 120.00098 * 354.86296 * 13 11 10 41 41 H 1.07993 * 120.25328 * 359.97438 * 15 14 13 42 42 H 1.08006 * 120.66006 * 180.24226 * 16 15 14 43 43 H 1.07994 * 120.43461 * 179.74688 * 17 16 15 44 44 H 0.97005 * 119.99927 * 180.02562 * 22 21 19 45 45 H 1.07993 * 120.47237 * 179.72726 * 28 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.1609 -1.2052 0.0005 5 6 1.4817 -2.4236 0.0005 6 6 2.2082 -3.5955 0.0006 7 7 3.5282 -3.5734 0.0000 8 6 4.2070 -2.4416 0.0000 9 6 5.7136 -2.4778 -0.0012 10 7 6.1999 -2.6103 1.3744 11 6 7.5244 -2.6581 1.6192 12 8 8.3154 -2.5962 0.6981 13 7 7.9719 -2.7744 2.8852 14 6 9.3335 -2.9316 3.1306 15 6 9.7766 -3.1648 4.4346 16 6 11.1323 -3.3266 4.6762 17 6 12.0113 -3.2402 3.6113 18 6 11.5037 -2.9979 2.3230 19 6 12.3892 -2.9075 1.2251 20 1 13.4519 -3.0241 1.3775 21 6 11.8884 -2.6668 -0.0602 22 7 10.6018 -2.5262 -0.2447 23 14 13.0587 -2.5482 -1.5114 24 1 14.4533 -2.7426 -1.0398 25 1 12.7212 -3.5975 -2.5065 26 1 12.9316 -1.2094 -2.1414 27 7 10.1888 -2.8528 2.1296 28 6 3.5553 -1.2262 0.0062 29 1 -0.3634 -0.5138 0.8900 30 1 -0.3634 1.0276 -0.0005 31 1 -0.3633 -0.5139 -0.8900 32 1 2.3791 1.5834 -1.0277 33 1 1.6082 2.0284 0.5138 34 1 3.1497 1.1385 0.5139 35 1 0.4021 -2.4488 -0.0003 36 1 1.6909 -4.5435 0.0010 37 1 6.0988 -1.5552 -0.4354 38 1 6.0562 -3.3278 -0.5911 39 1 5.5687 -2.6600 2.1093 40 1 7.3454 -2.7488 3.6253 41 1 9.0683 -3.2225 5.2478 42 1 11.4952 -3.5116 5.6765 43 1 13.0734 -3.3576 3.7678 44 1 10.2548 -2.3598 -1.1352 45 1 4.1168 -0.3037 0.0105 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932425141.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:33 Heat of formation + Delta-G solvation = 63.600840 kcal Electronic energy + Delta-G solvation = -28482.692348 eV Core-core repulsion = 24500.830694 eV Total energy + Delta-G solvation = -3981.861654 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.48 seconds Orbital eigenvalues (eV) -41.46922 -40.96103 -39.47320 -38.00087 -36.10657 -35.50578 -34.80133 -32.60325 -32.15325 -32.11916 -30.78491 -29.35158 -27.71917 -27.09180 -26.07540 -23.92512 -23.51305 -23.01930 -21.66017 -21.42904 -19.79862 -18.98172 -18.19632 -17.95489 -17.67650 -16.68228 -16.35246 -16.25847 -16.23849 -16.13611 -15.86416 -15.59922 -15.40308 -15.11784 -14.76547 -14.64668 -14.34584 -14.30724 -13.92787 -13.66984 -13.50917 -13.48520 -13.10707 -12.90027 -12.87127 -12.69150 -12.50539 -12.28407 -12.19001 -11.71263 -11.51892 -11.49804 -10.90595 -10.84618 -10.35763 -10.05655 -9.92187 -9.82066 -9.07658 -8.75631 -8.62982 -7.98534 -6.37440 0.11620 0.55752 0.99466 1.31434 1.41522 1.54343 1.56569 1.84941 2.08025 2.29536 2.58138 2.92301 3.07087 3.27348 3.50049 3.72060 3.96797 4.10867 4.15511 4.26266 4.33324 4.38759 4.44721 4.49335 4.58034 4.68459 4.73244 4.77951 4.82760 4.86985 4.89547 4.89816 4.99902 5.04249 5.06147 5.09317 5.30814 5.60650 5.67416 5.70028 5.88284 5.95292 6.05073 6.17060 6.30533 6.33224 6.45081 6.85594 7.10717 7.20145 7.24877 8.01515 8.41458 8.62256 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.013930 B = 0.002519 C = 0.002311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2009.514986 B =11114.726784 C =12113.662444 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.629 5.629 3 C 0.082 3.918 4 C 0.241 3.759 5 C -0.240 4.240 6 C 0.130 3.870 7 N -0.543 5.543 8 C 0.144 3.856 9 C 0.204 3.796 10 N -0.729 5.729 11 C 0.661 3.339 12 O -0.513 6.513 13 N -0.661 5.661 14 C 0.365 3.635 15 C -0.346 4.346 16 C -0.033 4.033 17 C -0.330 4.330 18 C 0.236 3.764 19 C -0.465 4.465 20 H 0.086 0.914 21 C 0.008 3.992 22 N -0.684 5.684 23 Si 0.975 3.025 24 H -0.254 1.254 25 H -0.273 1.273 26 H -0.270 1.270 27 N -0.506 5.506 28 C -0.234 4.234 29 H 0.063 0.937 30 H 0.095 0.905 31 H 0.062 0.938 32 H 0.055 0.945 33 H 0.092 0.908 34 H 0.064 0.936 35 H 0.158 0.842 36 H 0.178 0.822 37 H 0.072 0.928 38 H 0.055 0.945 39 H 0.400 0.600 40 H 0.416 0.584 41 H 0.131 0.869 42 H 0.138 0.862 43 H 0.105 0.895 44 H 0.269 0.731 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.044 6.366 0.556 25.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.339 5.339 3 C -0.060 4.060 4 C 0.129 3.871 5 C -0.265 4.265 6 C -0.026 4.026 7 N -0.257 5.257 8 C 0.008 3.992 9 C 0.079 3.921 10 N -0.389 5.389 11 C 0.359 3.641 12 O -0.380 6.380 13 N -0.311 5.311 14 C 0.125 3.875 15 C -0.372 4.372 16 C -0.058 4.058 17 C -0.353 4.353 18 C 0.110 3.890 19 C -0.496 4.496 20 H 0.104 0.896 21 C -0.218 4.218 22 N -0.303 5.303 23 Si 0.796 3.204 24 H -0.177 1.177 25 H -0.198 1.198 26 H -0.195 1.195 27 N -0.225 5.225 28 C -0.260 4.260 29 H 0.082 0.918 30 H 0.114 0.886 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.110 0.890 34 H 0.083 0.917 35 H 0.176 0.824 36 H 0.195 0.805 37 H 0.090 0.910 38 H 0.073 0.927 39 H 0.235 0.765 40 H 0.253 0.747 41 H 0.149 0.851 42 H 0.156 0.844 43 H 0.123 0.877 44 H 0.079 0.921 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -24.465 6.045 -1.391 25.239 hybrid contribution -0.111 0.587 0.850 1.039 sum -24.576 6.632 -0.541 25.461 Atomic orbital electron populations 1.21878 0.77239 1.04348 1.02019 1.46567 1.06533 1.02820 1.77965 1.21895 0.97671 0.84380 1.02069 1.18171 0.90871 0.87473 0.90629 1.21882 1.02236 0.91108 1.11318 1.22921 0.88591 0.99091 0.91969 1.67514 1.10401 1.30233 1.17560 1.20613 0.94537 0.88759 0.95340 1.19642 0.87652 1.01727 0.83043 1.44853 1.04300 1.80955 1.08762 1.16619 0.83083 0.80111 0.84241 1.91378 1.53230 1.51003 1.42438 1.42368 1.05632 1.75615 1.07495 1.18845 0.84773 0.93244 0.90656 1.20906 0.96829 1.24493 0.94923 1.21021 0.92515 0.94098 0.98117 1.21799 0.99255 1.19790 0.94490 1.18909 0.88912 0.88701 0.92475 1.19910 0.94383 1.43285 0.91998 0.89631 1.27069 0.97233 0.94755 1.02725 1.70568 1.12866 1.24163 1.22691 0.85278 0.79318 0.78340 0.77479 1.17708 1.19804 1.19516 1.68654 1.02115 1.21748 1.30023 1.21517 0.93473 0.99213 1.11773 0.91817 0.88645 0.91970 0.92666 0.88978 0.91702 0.82426 0.80502 0.90962 0.92710 0.76504 0.74675 0.85110 0.84433 0.87729 0.92059 0.84378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.59 9.44 127.77 1.21 1.79 16 2 N -0.63 -8.22 3.39 -746.65 -2.53 -10.75 16 3 C 0.08 0.86 10.19 127.77 1.30 2.16 16 4 C 0.24 4.39 6.58 38.58 0.25 4.65 16 5 C -0.24 -3.88 9.38 22.49 0.21 -3.67 16 6 C 0.13 2.56 11.17 84.58 0.94 3.50 16 7 N -0.54 -14.62 10.27 -184.19 -1.89 -16.51 16 8 C 0.14 3.85 6.14 42.46 0.26 4.11 16 9 C 0.20 6.60 5.98 85.64 0.51 7.11 16 10 N -0.73 -24.19 5.55 -482.32 -2.68 -26.87 16 11 C 0.66 29.16 8.52 179.05 1.53 30.69 16 12 O -0.51 -28.37 12.11 -3.95 -0.05 -28.42 16 13 N -0.66 -27.35 5.39 -322.12 -1.74 -29.09 16 14 C 0.36 18.50 7.43 133.26 0.99 19.49 16 15 C -0.35 -15.33 9.96 22.72 0.23 -15.10 16 16 C -0.03 -1.49 10.15 22.40 0.23 -1.27 16 17 C -0.33 -17.21 9.83 22.87 0.22 -16.98 16 18 C 0.24 14.09 6.55 40.19 0.26 14.35 16 19 C -0.46 -27.34 9.14 23.47 0.21 -27.12 16 20 H 0.09 4.71 7.85 -2.91 -0.02 4.69 16 21 C 0.01 0.44 5.50 85.29 0.47 0.91 16 22 N -0.68 -40.99 8.99 21.84 0.20 -40.79 16 23 Si 0.97 42.20 29.56 68.60 2.03 44.23 16 24 H -0.25 -10.43 7.11 99.48 0.71 -9.73 16 25 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 26 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 27 N -0.51 -30.30 5.74 -186.37 -1.07 -31.37 16 28 C -0.23 -5.17 8.87 22.49 0.20 -4.97 16 29 H 0.06 0.37 8.00 -2.38 -0.02 0.35 16 30 H 0.09 0.28 7.79 -2.39 -0.02 0.26 16 31 H 0.06 0.38 7.99 -2.39 -0.02 0.36 16 32 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 33 H 0.09 0.55 7.92 -2.39 -0.02 0.53 16 34 H 0.06 0.80 6.25 -2.39 -0.01 0.78 16 35 H 0.16 1.58 6.90 -2.91 -0.02 1.56 16 36 H 0.18 2.41 8.06 -2.91 -0.02 2.39 16 37 H 0.07 2.37 8.04 -2.39 -0.02 2.35 16 38 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.40 10.80 8.48 -92.71 -0.79 10.01 16 40 H 0.42 12.88 8.71 -92.71 -0.81 12.07 16 41 H 0.13 4.65 8.06 -2.91 -0.02 4.63 16 42 H 0.14 4.92 8.06 -2.91 -0.02 4.90 16 43 H 0.10 5.07 8.06 -2.91 -0.02 5.04 16 44 H 0.27 15.20 8.29 -92.70 -0.77 14.43 16 45 H 0.14 2.84 6.27 -2.91 -0.02 2.82 16 Total: -1.00 -82.07 378.15 0.75 -81.32 By element: Atomic # 1 Polarization: 39.16 SS G_CDS: -0.55 Total: 38.61 kcal Atomic # 6 Polarization: 10.61 SS G_CDS: 9.03 Total: 19.64 kcal Atomic # 7 Polarization: -145.67 SS G_CDS: -9.71 Total: -155.38 kcal Atomic # 8 Polarization: -28.37 SS G_CDS: -0.05 Total: -28.42 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.23 kcal Total: -82.07 0.75 -81.32 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932425141.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.918 kcal (2) G-P(sol) polarization free energy of solvation -82.068 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.48 seconds