Wall clock time and date at job start Sat Apr 11 2020 06:22:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.40077 * 126.03890 * 2 1 4 4 C 1.30836 * 108.20717 * 179.97438 * 3 2 1 5 5 C 1.39871 * 108.20189 * 0.24000 * 4 3 2 6 6 C 1.34948 * 126.03186 * 179.97438 * 2 1 3 7 7 C 1.50697 * 126.13330 * 0.02562 * 6 2 1 8 8 H 1.09003 * 109.87282 * 25.43637 * 7 6 2 9 9 C 1.54328 * 109.88236 * 264.26402 * 7 6 2 10 10 C 1.55152 * 102.94110 * 218.38645 * 9 7 6 11 11 C 1.54907 * 101.58468 * 35.50105 * 10 9 7 12 12 N 1.47016 * 109.88527 * 146.45507 * 7 6 2 13 13 C 1.34779 * 125.64832 * 298.39326 * 12 7 6 14 14 O 1.21580 * 119.99562 * 0.02562 * 13 12 7 15 15 N 1.34773 * 120.00067 * 180.02562 * 13 12 7 16 16 C 1.39244 * 119.99912 * 174.83034 * 15 13 12 17 17 C 1.39687 * 119.57737 * 185.29109 * 16 15 13 18 18 C 1.38645 * 119.49607 * 180.02562 * 17 16 15 19 19 C 1.38348 * 118.67326 * 359.97438 * 18 17 16 20 20 C 1.40573 * 119.12829 * 0.02562 * 19 18 17 21 21 C 1.41334 * 119.78387 * 179.97438 * 20 19 18 22 22 H 1.08005 * 120.00245 * 0.02562 * 21 20 19 23 23 C 1.40027 * 120.00109 * 179.97438 * 21 20 19 24 24 N 1.30743 * 119.99710 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00246 * 180.02562 * 23 21 20 26 26 H 1.48508 * 109.46998 * 60.00551 * 25 23 21 27 27 H 1.48498 * 109.47060 * 180.02562 * 25 23 21 28 28 H 1.48497 * 109.47344 * 300.00520 * 25 23 21 29 29 N 1.31907 * 119.57421 * 5.02477 * 16 15 13 30 30 H 1.09005 * 109.46421 * 89.97597 * 1 2 3 31 31 H 1.08997 * 109.47368 * 209.97276 * 1 2 3 32 32 H 1.09001 * 109.46561 * 329.98134 * 1 2 3 33 33 H 1.07997 * 125.90259 * 179.97438 * 4 3 2 34 34 H 1.07999 * 126.04223 * 179.72160 * 5 4 3 35 35 H 1.09000 * 110.71934 * 336.75126 * 9 7 6 36 36 H 1.09006 * 110.72084 * 100.02184 * 9 7 6 37 37 H 1.09002 * 111.00163 * 277.42365 * 10 9 7 38 38 H 1.09000 * 111.03966 * 153.59125 * 10 9 7 39 39 H 1.09000 * 110.36871 * 204.15305 * 11 10 9 40 40 H 1.08997 * 110.45601 * 81.87264 * 11 10 9 41 41 H 0.97000 * 120.00203 * 354.83762 * 15 13 12 42 42 H 1.08000 * 120.24875 * 0.02584 * 17 16 15 43 43 H 1.08003 * 120.66042 * 179.97438 * 18 17 16 44 44 H 1.08001 * 120.43566 * 180.02562 * 19 18 17 45 45 H 0.97008 * 120.00150 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2892 1.1327 0.0000 4 6 3.5347 0.7320 0.0006 5 6 3.5437 -0.6666 -0.0046 6 6 2.2589 -1.0913 0.0005 7 6 1.7973 -2.5259 0.0006 8 1 0.8027 -2.5951 -0.4401 9 6 1.7741 -3.0696 1.4447 10 6 2.2787 -4.5270 1.2753 11 6 3.3208 -4.3655 0.1406 12 7 2.7413 -3.3549 -0.7629 13 6 3.0297 -3.2140 -2.0719 14 8 2.4898 -2.3405 -2.7227 15 7 3.9167 -4.0414 -2.6594 16 6 4.1348 -3.9666 -4.0326 17 6 4.9713 -4.8997 -4.6497 18 6 5.1877 -4.8233 -6.0170 19 6 4.5629 -3.8177 -6.7328 20 6 3.7326 -2.9089 -6.0540 21 6 3.0879 -1.8759 -6.7715 22 1 3.2336 -1.7869 -7.8379 23 6 2.2594 -0.9685 -6.0999 24 7 2.0827 -1.0767 -4.8090 25 14 1.4068 0.3963 -7.0483 26 1 0.5232 -0.1976 -8.0837 27 1 0.5939 1.2153 -6.1137 28 1 2.4259 1.2566 -7.7015 29 7 3.5446 -3.0187 -4.7348 30 1 -0.3632 0.0004 -1.0278 31 1 -0.3634 -0.8902 0.5134 32 1 -0.3632 0.8899 0.5141 33 1 4.4054 1.3709 0.0003 34 1 4.4211 -1.2964 -0.0098 35 1 2.4495 -2.4993 2.0824 36 1 0.7605 -3.0566 1.8455 37 1 1.4678 -5.1882 0.9699 38 1 2.7498 -4.8868 2.1901 39 1 3.4585 -5.3102 -0.3853 40 1 4.2709 -4.0142 0.5431 41 1 4.4031 -4.6891 -2.1256 42 1 5.4458 -5.6747 -4.0661 43 1 5.8311 -5.5347 -6.5134 44 1 4.7111 -3.7320 -7.7992 45 1 1.5090 -0.4478 -4.3436 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932425176.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:38 Heat of formation + Delta-G solvation = 130.529595 kcal Electronic energy + Delta-G solvation = -30690.885000 eV Core-core repulsion = 26711.925595 eV Total energy + Delta-G solvation = -3978.959405 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.13056 -39.64414 -38.20709 -36.72228 -34.06085 -33.13114 -32.93649 -31.32149 -31.00189 -30.21971 -28.71216 -27.68959 -26.49084 -25.50258 -23.72590 -21.84173 -21.52636 -21.22456 -20.76634 -19.88594 -18.67341 -17.97936 -17.12938 -16.86523 -16.10919 -15.48698 -15.16652 -14.65394 -14.43941 -14.34219 -14.25875 -14.07552 -13.69847 -13.37669 -13.31461 -13.04013 -12.75518 -12.66355 -12.46667 -12.34556 -12.16475 -11.88556 -11.74720 -11.64349 -11.41115 -11.09857 -10.93703 -10.92957 -10.61899 -10.41472 -10.37067 -9.90413 -9.66022 -9.12767 -8.98949 -8.91888 -8.29151 -8.09371 -7.90494 -7.16718 -6.90231 -6.06248 -4.34355 2.12672 2.71656 2.89393 3.08567 3.17333 3.20027 3.21266 3.23357 3.31483 4.10861 4.15769 4.35460 4.43290 4.59890 4.70556 4.77399 4.95189 5.00711 5.11910 5.24743 5.33730 5.40019 5.52387 5.54500 5.57876 5.68352 5.71801 5.94727 6.00021 6.08698 6.10558 6.12746 6.34335 6.46954 6.54597 6.79637 6.85504 6.89380 6.97488 7.25453 7.29063 7.42485 7.66106 7.77440 7.85729 8.02126 8.20403 8.31899 8.66456 8.83452 9.10709 9.60600 10.31477 10.53939 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009827 B = 0.005135 C = 0.003720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2848.547560 B = 5451.260976 C = 7525.359546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.366 5.366 3 N -0.302 5.302 4 C 0.046 3.954 5 C -0.249 4.249 6 C 0.093 3.907 7 C 0.226 3.774 8 H 0.079 0.921 9 C -0.122 4.122 10 C -0.128 4.128 11 C 0.098 3.902 12 N -0.635 5.635 13 C 0.683 3.317 14 O -0.446 6.446 15 N -0.669 5.669 16 C 0.387 3.613 17 C -0.358 4.358 18 C -0.035 4.035 19 C -0.307 4.307 20 C 0.272 3.728 21 C -0.425 4.425 22 H 0.081 0.919 23 C 0.057 3.943 24 N -0.644 5.644 25 Si 0.892 3.108 26 H -0.267 1.267 27 H -0.281 1.281 28 H -0.267 1.267 29 N -0.470 5.470 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.177 0.823 34 H 0.136 0.864 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.077 0.923 38 H 0.083 0.917 39 H 0.072 0.928 40 H 0.063 0.937 41 H 0.394 0.606 42 H 0.089 0.911 43 H 0.095 0.905 44 H 0.095 0.905 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.947 -4.301 16.287 16.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.149 5.149 3 N -0.123 5.123 4 C -0.140 4.140 5 C -0.279 4.279 6 C -0.036 4.036 7 C 0.119 3.881 8 H 0.097 0.903 9 C -0.160 4.160 10 C -0.166 4.166 11 C -0.026 4.026 12 N -0.379 5.379 13 C 0.383 3.617 14 O -0.308 6.308 15 N -0.318 5.318 16 C 0.147 3.853 17 C -0.385 4.385 18 C -0.059 4.059 19 C -0.330 4.330 20 C 0.147 3.853 21 C -0.455 4.455 22 H 0.099 0.901 23 C -0.173 4.173 24 N -0.262 5.262 25 Si 0.717 3.283 26 H -0.192 1.192 27 H -0.206 1.206 28 H -0.192 1.192 29 N -0.189 5.189 30 H 0.094 0.906 31 H 0.100 0.900 32 H 0.103 0.897 33 H 0.194 0.806 34 H 0.154 0.846 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.096 0.904 38 H 0.102 0.898 39 H 0.090 0.910 40 H 0.081 0.919 41 H 0.227 0.773 42 H 0.108 0.892 43 H 0.113 0.887 44 H 0.113 0.887 45 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.016 -1.839 16.255 16.845 hybrid contribution 1.144 -1.079 -0.662 1.706 sum -2.872 -2.918 15.593 16.122 Atomic orbital electron populations 1.21781 0.75015 1.03542 1.03623 1.48243 1.06118 1.03283 1.57264 1.77265 1.01823 1.07866 1.25365 1.23680 0.95067 0.95121 1.00101 1.20949 0.96124 0.94530 1.16259 1.21168 0.91483 0.90027 1.00881 1.19561 0.93035 0.83851 0.91682 0.90278 1.22689 1.02615 0.96380 0.94340 1.22739 0.98999 0.96310 0.98580 1.22223 0.96656 0.92371 0.91352 1.47844 1.47397 1.34981 1.07696 1.15954 0.82207 0.83797 0.79742 1.91412 1.50283 1.30477 1.58622 1.42543 1.43249 1.38990 1.07011 1.18333 0.92183 0.92018 0.82733 1.20409 1.15351 1.07060 0.95635 1.20528 0.96268 0.96029 0.93121 1.21608 1.09715 1.02743 0.98973 1.18365 0.88817 0.90862 0.87273 1.19525 1.22349 1.08493 0.95145 0.90097 1.26172 0.97262 0.98692 0.95159 1.70326 1.21807 1.27688 1.06417 0.86644 0.79968 0.81451 0.80286 1.19209 1.20561 1.19163 1.68689 1.24335 1.19263 1.06619 0.90581 0.90035 0.89653 0.80619 0.84624 0.90011 0.89956 0.90430 0.89848 0.90957 0.91861 0.77269 0.89242 0.88676 0.88659 0.91792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.21 11.08 59.85 0.66 1.88 16 2 N -0.37 -5.92 4.01 -63.88 -0.26 -6.18 16 3 N -0.30 -5.40 12.57 30.62 0.39 -5.01 16 4 C 0.05 0.76 12.03 -17.36 -0.21 0.55 16 5 C -0.25 -4.20 10.15 -40.01 -0.41 -4.60 16 6 C 0.09 1.49 5.10 -82.26 -0.42 1.07 16 7 C 0.23 3.08 2.91 -68.11 -0.20 2.88 16 8 H 0.08 1.14 7.54 -51.93 -0.39 0.75 16 9 C -0.12 -1.08 6.47 -24.90 -0.16 -1.25 16 10 C -0.13 -0.98 7.08 -24.59 -0.17 -1.16 16 11 C 0.10 1.01 6.53 -2.53 -0.02 0.99 16 12 N -0.64 -9.67 2.74 -170.01 -0.47 -10.13 16 13 C 0.68 14.26 8.09 -86.92 -0.70 13.56 16 14 O -0.45 -11.53 11.94 5.30 0.06 -11.47 16 15 N -0.67 -13.58 5.33 -15.78 -0.08 -13.67 16 16 C 0.39 9.62 7.43 -154.99 -1.15 8.47 16 17 C -0.36 -8.16 9.96 -38.89 -0.39 -8.54 16 18 C -0.04 -0.81 10.15 -39.39 -0.40 -1.21 16 19 C -0.31 -7.88 9.83 -38.66 -0.38 -8.26 16 20 C 0.27 7.79 6.55 -85.00 -0.56 7.24 16 21 C -0.42 -11.97 9.14 -37.73 -0.34 -12.32 16 22 H 0.08 2.13 7.85 -52.48 -0.41 1.72 16 23 C 0.06 1.55 5.50 -17.34 -0.10 1.45 16 24 N -0.64 -18.48 8.98 55.55 0.50 -17.98 16 25 Si 0.89 20.07 29.56 -169.99 -5.02 15.05 16 26 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 27 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 28 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 29 N -0.47 -13.46 5.73 -10.26 -0.06 -13.52 16 30 H 0.08 0.98 8.14 -51.93 -0.42 0.55 16 31 H 0.08 0.71 7.56 -51.93 -0.39 0.32 16 32 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.18 2.40 8.06 -52.49 -0.42 1.98 16 34 H 0.14 2.21 8.06 -52.49 -0.42 1.79 16 35 H 0.08 0.74 7.84 -51.93 -0.41 0.33 16 36 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 37 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.07 0.69 7.38 -51.93 -0.38 0.31 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.39 6.28 7.24 -40.82 -0.30 5.98 16 42 H 0.09 1.74 8.06 -52.49 -0.42 1.31 16 43 H 0.10 1.86 8.06 -52.48 -0.42 1.43 16 44 H 0.10 2.27 8.06 -52.49 -0.42 1.85 16 45 H 0.27 7.49 8.29 -40.82 -0.34 7.16 16 LS Contribution 373.03 15.07 5.62 5.62 Total: -1.00 -36.62 373.03 -10.33 -46.94 By element: Atomic # 1 Polarization: 15.66 SS G_CDS: -6.07 Total: 9.59 kcal Atomic # 6 Polarization: 5.69 SS G_CDS: -4.94 Total: 0.75 kcal Atomic # 7 Polarization: -66.51 SS G_CDS: 0.02 Total: -66.49 kcal Atomic # 8 Polarization: -11.53 SS G_CDS: 0.06 Total: -11.47 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -36.62 -10.33 -46.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932425176.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 177.473 kcal (2) G-P(sol) polarization free energy of solvation -36.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.944 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds