Wall clock time and date at job start Sat Apr 11 2020 06:22:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 N 1.40077 * 126.03890 * 2 1 4 4 C 1.30836 * 108.20717 * 179.97438 * 3 2 1 5 5 C 1.39871 * 108.20189 * 0.24000 * 4 3 2 6 6 C 1.34948 * 126.03186 * 179.97438 * 2 1 3 7 7 C 1.50697 * 126.13330 * 0.02562 * 6 2 1 8 8 H 1.09003 * 109.87282 * 25.43637 * 7 6 2 9 9 C 1.54328 * 109.88236 * 264.26402 * 7 6 2 10 10 C 1.55152 * 102.94110 * 218.38645 * 9 7 6 11 11 C 1.54907 * 101.58468 * 35.50105 * 10 9 7 12 12 N 1.47016 * 109.88527 * 146.45507 * 7 6 2 13 13 C 1.34779 * 125.64832 * 298.39326 * 12 7 6 14 14 O 1.21580 * 119.99562 * 0.02562 * 13 12 7 15 15 N 1.34773 * 120.00067 * 180.02562 * 13 12 7 16 16 C 1.39244 * 119.99912 * 174.83034 * 15 13 12 17 17 C 1.39687 * 119.57737 * 185.29109 * 16 15 13 18 18 C 1.38645 * 119.49607 * 180.02562 * 17 16 15 19 19 C 1.38348 * 118.67326 * 359.97438 * 18 17 16 20 20 C 1.40573 * 119.12829 * 0.02562 * 19 18 17 21 21 C 1.41334 * 119.78387 * 179.97438 * 20 19 18 22 22 H 1.08005 * 120.00245 * 0.02562 * 21 20 19 23 23 C 1.40027 * 120.00109 * 179.97438 * 21 20 19 24 24 N 1.30743 * 119.99710 * 0.02562 * 23 21 20 25 25 Si 1.86799 * 120.00246 * 180.02562 * 23 21 20 26 26 H 1.48508 * 109.46998 * 60.00551 * 25 23 21 27 27 H 1.48498 * 109.47060 * 180.02562 * 25 23 21 28 28 H 1.48497 * 109.47344 * 300.00520 * 25 23 21 29 29 N 1.31907 * 119.57421 * 5.02477 * 16 15 13 30 30 H 1.09005 * 109.46421 * 89.97597 * 1 2 3 31 31 H 1.08997 * 109.47368 * 209.97276 * 1 2 3 32 32 H 1.09001 * 109.46561 * 329.98134 * 1 2 3 33 33 H 1.07997 * 125.90259 * 179.97438 * 4 3 2 34 34 H 1.07999 * 126.04223 * 179.72160 * 5 4 3 35 35 H 1.09000 * 110.71934 * 336.75126 * 9 7 6 36 36 H 1.09006 * 110.72084 * 100.02184 * 9 7 6 37 37 H 1.09002 * 111.00163 * 277.42365 * 10 9 7 38 38 H 1.09000 * 111.03966 * 153.59125 * 10 9 7 39 39 H 1.09000 * 110.36871 * 204.15305 * 11 10 9 40 40 H 1.08997 * 110.45601 * 81.87264 * 11 10 9 41 41 H 0.97000 * 120.00203 * 354.83762 * 15 13 12 42 42 H 1.08000 * 120.24875 * 0.02584 * 17 16 15 43 43 H 1.08003 * 120.66042 * 179.97438 * 18 17 16 44 44 H 1.08001 * 120.43566 * 180.02562 * 19 18 17 45 45 H 0.97008 * 120.00150 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 7 2.2892 1.1327 0.0000 4 6 3.5347 0.7320 0.0006 5 6 3.5437 -0.6666 -0.0046 6 6 2.2589 -1.0913 0.0005 7 6 1.7973 -2.5259 0.0006 8 1 0.8027 -2.5951 -0.4401 9 6 1.7741 -3.0696 1.4447 10 6 2.2787 -4.5270 1.2753 11 6 3.3208 -4.3655 0.1406 12 7 2.7413 -3.3549 -0.7629 13 6 3.0297 -3.2140 -2.0719 14 8 2.4898 -2.3405 -2.7227 15 7 3.9167 -4.0414 -2.6594 16 6 4.1348 -3.9666 -4.0326 17 6 4.9713 -4.8997 -4.6497 18 6 5.1877 -4.8233 -6.0170 19 6 4.5629 -3.8177 -6.7328 20 6 3.7326 -2.9089 -6.0540 21 6 3.0879 -1.8759 -6.7715 22 1 3.2336 -1.7869 -7.8379 23 6 2.2594 -0.9685 -6.0999 24 7 2.0827 -1.0767 -4.8090 25 14 1.4068 0.3963 -7.0483 26 1 0.5232 -0.1976 -8.0837 27 1 0.5939 1.2153 -6.1137 28 1 2.4259 1.2566 -7.7015 29 7 3.5446 -3.0187 -4.7348 30 1 -0.3632 0.0004 -1.0278 31 1 -0.3634 -0.8902 0.5134 32 1 -0.3632 0.8899 0.5141 33 1 4.4054 1.3709 0.0003 34 1 4.4211 -1.2964 -0.0098 35 1 2.4495 -2.4993 2.0824 36 1 0.7605 -3.0566 1.8455 37 1 1.4678 -5.1882 0.9699 38 1 2.7498 -4.8868 2.1901 39 1 3.4585 -5.3102 -0.3853 40 1 4.2709 -4.0142 0.5431 41 1 4.4031 -4.6891 -2.1256 42 1 5.4458 -5.6747 -4.0661 43 1 5.8311 -5.5347 -6.5134 44 1 4.7111 -3.7320 -7.7992 45 1 1.5090 -0.4478 -4.3436 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932425176.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:37 Heat of formation + Delta-G solvation = 107.350687 kcal Electronic energy + Delta-G solvation = -30691.890113 eV Core-core repulsion = 26711.925595 eV Total energy + Delta-G solvation = -3979.964518 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.34767 -41.12490 -39.81188 -38.16653 -35.89001 -34.86650 -34.22471 -32.58021 -32.13500 -32.08057 -30.51041 -28.75201 -27.58707 -27.44588 -25.01729 -23.48811 -23.03820 -22.36972 -22.02406 -21.26598 -20.18219 -19.56378 -18.59066 -18.13481 -17.82032 -16.72761 -16.43139 -16.31977 -16.23816 -15.80028 -15.63233 -15.48840 -15.14145 -14.72703 -14.61522 -14.28322 -14.18164 -13.90099 -13.71796 -13.62669 -13.54641 -13.24259 -13.07501 -12.86382 -12.75419 -12.57319 -12.53698 -12.33482 -12.10764 -11.81317 -11.68350 -11.59272 -11.49699 -10.86351 -10.79236 -10.20098 -9.87945 -9.57268 -9.35357 -9.08384 -8.75861 -8.03015 -6.40907 0.88667 0.97943 1.29551 1.33526 1.44642 1.49430 1.55017 1.81352 1.93564 2.22459 2.57468 3.03134 3.14862 3.50208 3.62235 3.76209 3.80935 4.07826 4.09473 4.23045 4.29780 4.36194 4.37050 4.55784 4.60737 4.67200 4.70124 4.77235 4.83347 4.85605 4.93867 4.97610 4.98003 5.07456 5.11339 5.19252 5.23619 5.38474 5.50241 5.69555 5.72775 5.87361 5.94132 6.05683 6.14638 6.28535 6.41715 6.75719 6.82761 7.06971 7.18734 8.02692 8.38519 8.56076 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009827 B = 0.005135 C = 0.003720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2848.547560 B = 5451.260976 C = 7525.359546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.373 5.373 3 N -0.334 5.334 4 C 0.034 3.966 5 C -0.273 4.273 6 C 0.095 3.905 7 C 0.220 3.780 8 H 0.068 0.932 9 C -0.109 4.109 10 C -0.114 4.114 11 C 0.087 3.913 12 N -0.630 5.630 13 C 0.675 3.325 14 O -0.503 6.503 15 N -0.659 5.659 16 C 0.365 3.635 17 C -0.344 4.344 18 C -0.033 4.033 19 C -0.331 4.331 20 C 0.239 3.761 21 C -0.467 4.467 22 H 0.085 0.915 23 C 0.012 3.988 24 N -0.677 5.677 25 Si 0.966 3.034 26 H -0.256 1.256 27 H -0.281 1.281 28 H -0.260 1.260 29 N -0.505 5.505 30 H 0.059 0.941 31 H 0.115 0.885 32 H 0.102 0.898 33 H 0.197 0.803 34 H 0.135 0.865 35 H 0.084 0.916 36 H 0.109 0.891 37 H 0.084 0.916 38 H 0.116 0.884 39 H 0.083 0.917 40 H 0.076 0.924 41 H 0.414 0.586 42 H 0.132 0.868 43 H 0.138 0.862 44 H 0.103 0.897 45 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.704 -6.471 18.199 19.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.047 4.047 2 N -0.156 5.156 3 N -0.157 5.157 4 C -0.150 4.150 5 C -0.303 4.303 6 C -0.035 4.035 7 C 0.113 3.887 8 H 0.086 0.914 9 C -0.148 4.148 10 C -0.151 4.151 11 C -0.035 4.035 12 N -0.372 5.372 13 C 0.376 3.624 14 O -0.369 6.369 15 N -0.309 5.309 16 C 0.125 3.875 17 C -0.370 4.370 18 C -0.057 4.057 19 C -0.354 4.354 20 C 0.113 3.887 21 C -0.498 4.498 22 H 0.103 0.897 23 C -0.214 4.214 24 N -0.295 5.295 25 Si 0.787 3.213 26 H -0.180 1.180 27 H -0.207 1.207 28 H -0.185 1.185 29 N -0.224 5.224 30 H 0.078 0.922 31 H 0.134 0.866 32 H 0.121 0.879 33 H 0.213 0.787 34 H 0.153 0.847 35 H 0.103 0.897 36 H 0.127 0.873 37 H 0.102 0.898 38 H 0.135 0.865 39 H 0.101 0.899 40 H 0.094 0.906 41 H 0.252 0.748 42 H 0.150 0.850 43 H 0.156 0.844 44 H 0.121 0.879 45 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -3.751 -4.070 18.243 19.064 hybrid contribution 1.176 -0.598 -1.171 1.764 sum -2.575 -4.667 17.072 17.885 Atomic orbital electron populations 1.22086 0.73044 1.06170 1.03366 1.48579 1.07403 1.02919 1.56693 1.77179 1.02487 1.09280 1.26721 1.24101 0.95558 0.95681 0.99658 1.21090 0.96684 0.94724 1.17785 1.21587 0.91409 0.91127 0.99394 1.19921 0.91839 0.82631 0.94353 0.91400 1.22707 1.04527 0.96850 0.90666 1.22752 0.98341 0.95396 0.98642 1.22612 0.97997 0.91383 0.91519 1.47704 1.47197 1.35928 1.06384 1.16208 0.81804 0.83155 0.81278 1.91398 1.52075 1.32603 1.60825 1.42387 1.43417 1.39410 1.05711 1.18847 0.92293 0.91908 0.84417 1.20905 1.13427 1.06632 0.95991 1.21013 0.95660 0.95626 0.93375 1.21790 1.10362 1.03548 0.99684 1.18847 0.89828 0.91936 0.88072 1.19823 1.24320 1.10041 0.95568 0.89732 1.26984 0.97582 1.00823 0.96039 1.70577 1.22674 1.28412 1.07876 0.85514 0.78818 0.78135 0.78787 1.18016 1.20666 1.18463 1.68658 1.25706 1.21068 1.06952 0.92223 0.86621 0.87905 0.78674 0.84706 0.89728 0.87252 0.89762 0.86527 0.89861 0.90611 0.74844 0.85024 0.84427 0.87871 0.92826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.22 11.08 127.77 1.42 3.64 16 2 N -0.37 -12.26 4.01 -356.01 -1.43 -13.69 16 3 N -0.33 -12.33 12.57 -57.03 -0.72 -13.04 16 4 C 0.03 1.19 12.03 85.24 1.03 2.22 16 5 C -0.27 -9.41 10.15 21.99 0.22 -9.19 16 6 C 0.09 3.05 5.10 41.41 0.21 3.26 16 7 C 0.22 5.75 2.91 44.60 0.13 5.88 16 8 H 0.07 1.93 7.54 -2.39 -0.02 1.91 16 9 C -0.11 -1.58 6.47 31.78 0.21 -1.38 16 10 C -0.11 -1.25 7.08 31.98 0.23 -1.02 16 11 C 0.09 1.53 6.53 86.85 0.57 2.10 16 12 N -0.63 -18.56 2.74 -810.06 -2.22 -20.78 16 13 C 0.68 28.52 8.09 179.05 1.45 29.97 16 14 O -0.50 -27.14 11.94 -3.97 -0.05 -27.19 16 15 N -0.66 -26.34 5.33 -322.12 -1.72 -28.06 16 16 C 0.37 18.11 7.43 133.26 0.99 19.10 16 17 C -0.34 -14.85 9.96 22.72 0.23 -14.63 16 18 C -0.03 -1.43 10.15 22.39 0.23 -1.21 16 19 C -0.33 -17.08 9.83 22.87 0.22 -16.85 16 20 C 0.24 14.18 6.55 40.19 0.26 14.44 16 21 C -0.47 -27.51 9.14 23.47 0.21 -27.30 16 22 H 0.08 4.67 7.85 -2.91 -0.02 4.64 16 23 C 0.01 0.66 5.50 85.29 0.47 1.13 16 24 N -0.68 -41.00 8.98 21.84 0.20 -40.80 16 25 Si 0.97 43.14 29.56 68.60 2.03 45.17 16 26 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 27 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 28 H -0.26 -11.20 7.11 99.48 0.71 -10.50 16 29 N -0.50 -29.81 5.73 -186.36 -1.07 -30.88 16 30 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 31 H 0.12 1.86 7.56 -2.39 -0.02 1.84 16 32 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 33 H 0.20 5.52 8.06 -2.91 -0.02 5.50 16 34 H 0.14 4.49 8.06 -2.91 -0.02 4.47 16 35 H 0.08 1.24 7.84 -2.39 -0.02 1.22 16 36 H 0.11 1.06 8.14 -2.38 -0.02 1.04 16 37 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.12 0.63 8.14 -2.39 -0.02 0.61 16 39 H 0.08 1.31 7.38 -2.39 -0.02 1.29 16 40 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 41 H 0.41 12.35 7.24 -92.71 -0.67 11.68 16 42 H 0.13 4.51 8.06 -2.91 -0.02 4.49 16 43 H 0.14 4.82 8.06 -2.91 -0.02 4.80 16 44 H 0.10 4.98 8.06 -2.91 -0.02 4.95 16 45 H 0.26 15.44 8.29 -92.70 -0.77 14.67 16 Total: -1.00 -86.13 373.03 3.44 -82.69 By element: Atomic # 1 Polarization: 36.06 SS G_CDS: 0.35 Total: 36.42 kcal Atomic # 6 Polarization: 2.10 SS G_CDS: 8.07 Total: 10.17 kcal Atomic # 7 Polarization: -140.30 SS G_CDS: -6.95 Total: -147.25 kcal Atomic # 8 Polarization: -27.14 SS G_CDS: -0.05 Total: -27.19 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -86.13 3.44 -82.69 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932425176.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 190.039 kcal (2) G-P(sol) polarization free energy of solvation -86.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 103.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds