Wall clock time and date at job start Sat Apr 11 2020 06:22:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.40080 * 126.03977 * 2 1 4 4 C 1.30836 * 108.21004 * 179.97438 * 3 2 1 5 5 C 1.39876 * 108.19939 * 359.78344 * 4 3 2 6 6 C 1.34953 * 126.03751 * 179.97438 * 2 1 3 7 7 C 1.50704 * 126.12449 * 359.97438 * 6 2 1 8 8 H 1.09003 * 109.99710 * 333.43538 * 7 6 2 9 9 C 1.54327 * 109.88148 * 94.53486 * 7 6 2 10 10 C 1.55153 * 102.94048 * 141.60798 * 9 7 6 11 11 C 1.55125 * 101.48896 * 324.33275 * 10 9 7 12 12 N 1.47015 * 109.88132 * 212.34352 * 7 6 2 13 13 C 1.34779 * 125.65102 * 61.60329 * 12 7 6 14 14 O 1.21576 * 120.00063 * 0.02562 * 13 12 7 15 15 N 1.34776 * 120.00025 * 179.97438 * 13 12 7 16 16 C 1.39245 * 119.99797 * 186.01903 * 15 13 12 17 17 C 1.39684 * 119.58012 * 17.94115 * 16 15 13 18 18 C 1.38638 * 119.50129 * 179.97438 * 17 16 15 19 19 C 1.38360 * 118.66983 * 359.72775 * 18 17 16 20 20 C 1.40575 * 119.13063 * 0.55432 * 19 18 17 21 21 C 1.41323 * 119.78835 * 179.70602 * 20 19 18 22 22 H 1.08003 * 120.00011 * 8.76875 * 21 20 19 23 23 C 1.40028 * 120.00035 * 188.76501 * 21 20 19 24 24 N 1.30749 * 120.00239 * 195.66441 * 23 21 20 25 25 Si 1.86799 * 120.00031 * 15.66792 * 23 21 20 26 26 H 1.48504 * 109.47162 * 269.99754 * 25 23 21 27 27 H 1.48504 * 109.47305 * 29.99769 * 25 23 21 28 28 H 1.48496 * 109.47305 * 149.99848 * 25 23 21 29 29 N 1.31909 * 119.57773 * 197.95813 * 16 15 13 30 30 H 1.08999 * 109.46691 * 274.22721 * 1 2 3 31 31 H 1.09000 * 109.47374 * 34.22548 * 1 2 3 32 32 H 1.08996 * 109.47532 * 154.22755 * 1 2 3 33 33 H 1.08000 * 125.90463 * 180.02562 * 4 3 2 34 34 H 1.07997 * 126.04201 * 180.23459 * 5 4 3 35 35 H 1.09001 * 110.71762 * 259.97434 * 9 7 6 36 36 H 1.08999 * 110.72140 * 23.24581 * 9 7 6 37 37 H 1.09007 * 111.00478 * 82.57549 * 10 9 7 38 38 H 1.08997 * 111.00180 * 206.41793 * 10 9 7 39 39 H 1.08998 * 110.50052 * 278.45669 * 11 10 9 40 40 H 1.09002 * 110.34602 * 156.05894 * 11 10 9 41 41 H 0.96998 * 119.99929 * 6.02772 * 15 13 12 42 42 H 1.08002 * 120.24881 * 359.97438 * 17 16 15 43 43 H 1.07998 * 120.66932 * 179.97438 * 18 17 16 44 44 H 1.07994 * 120.43272 * 180.26436 * 19 18 17 45 45 H 0.97000 * 119.99884 * 354.93117 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1327 0.0000 4 6 3.5346 0.7321 0.0006 5 6 3.5437 -0.6666 0.0059 6 6 2.2589 -1.0913 0.0005 7 6 1.7973 -2.5259 0.0017 8 1 0.8111 -2.5997 0.4602 9 6 1.7452 -3.0616 -1.4447 10 6 2.2531 -4.5199 -1.2935 11 6 3.3217 -4.3611 -0.1803 12 7 2.7563 -3.3591 0.7416 13 6 3.0709 -3.2253 2.0453 14 8 2.5435 -2.3560 2.7118 15 7 3.9694 -4.0559 2.6103 16 6 4.2020 -4.0007 3.9821 17 6 3.2695 -3.3780 4.8151 18 6 3.5026 -3.3244 6.1807 19 6 4.6579 -3.8991 6.6800 20 6 5.5605 -4.5059 5.7894 21 6 6.7479 -5.0916 6.2836 22 1 6.8944 -5.1992 7.3482 23 6 7.7345 -5.5324 5.3930 24 7 8.6774 -6.3374 5.8081 25 14 7.7035 -4.9703 3.6119 26 1 6.9006 -5.9245 2.8056 27 1 7.0945 -3.6183 3.5300 28 1 9.0906 -4.9211 3.0841 29 7 5.3003 -4.5369 4.4783 30 1 -0.3633 0.0758 1.0249 31 1 -0.3634 0.8497 -0.5780 32 1 -0.3634 -0.9254 -0.4468 33 1 4.4054 1.3709 0.0011 34 1 4.4210 -1.2964 0.0113 35 1 0.7238 -3.0464 -1.8250 36 1 2.4077 -2.4878 -2.0926 37 1 1.4483 -5.1829 -0.9755 38 1 2.7057 -4.8739 -2.2197 39 1 4.2608 -4.0020 -0.6012 40 1 3.4743 -5.3086 0.3365 41 1 4.4540 -4.6921 2.0614 42 1 2.3738 -2.9415 4.3985 43 1 2.7945 -2.8473 6.8421 44 1 4.8658 -3.8775 7.7395 45 1 8.7370 -6.5708 6.7477 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932425178.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:41 Heat of formation + Delta-G solvation = 96.943151 kcal Electronic energy + Delta-G solvation = -30011.141319 eV Core-core repulsion = 26030.725496 eV Total energy + Delta-G solvation = -3980.415823 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.51200 -40.33068 -38.73588 -37.42410 -34.56797 -33.57286 -33.34441 -31.82094 -31.35178 -31.00546 -29.16391 -28.00194 -26.78324 -25.35259 -24.21157 -22.18407 -21.80025 -21.63681 -21.07779 -20.19705 -19.23879 -18.43560 -17.94740 -17.39231 -16.61846 -15.99359 -15.50948 -15.17043 -15.04577 -14.91484 -14.49489 -14.22268 -13.84082 -13.75237 -13.61457 -13.35354 -13.19902 -13.00252 -12.78452 -12.63176 -12.49239 -12.32021 -12.19685 -11.92680 -11.84075 -11.64637 -11.21286 -11.14824 -10.86470 -10.67485 -10.30560 -9.96959 -9.74658 -9.44382 -9.22630 -9.07072 -8.83797 -8.48262 -8.45089 -7.87375 -7.35255 -7.24217 -4.72645 1.78622 2.32306 2.41308 2.65429 2.71665 2.89643 3.38653 3.47115 3.64212 3.88540 3.95830 4.12797 4.25234 4.34783 4.38021 4.47791 4.63498 4.67747 4.80788 4.98212 5.06483 5.12101 5.24852 5.29385 5.36492 5.42946 5.49000 5.57665 5.66661 5.73958 5.80681 5.85362 5.96614 6.12379 6.18218 6.48534 6.58276 6.67366 6.67683 6.90776 6.97398 7.20490 7.35000 7.46947 7.65810 7.70820 7.79152 7.89977 8.20327 8.36507 8.65765 8.75761 9.47494 10.00015 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014472 B = 0.003510 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.301935 B = 7974.898707 C = 8513.589339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.101 3.899 2 N -0.368 5.368 3 N -0.298 5.298 4 C 0.048 3.952 5 C -0.251 4.251 6 C 0.084 3.916 7 C 0.223 3.777 8 H 0.085 0.915 9 C -0.122 4.122 10 C -0.127 4.127 11 C 0.091 3.909 12 N -0.627 5.627 13 C 0.730 3.270 14 O -0.551 6.551 15 N -0.663 5.663 16 C 0.401 3.599 17 C -0.310 4.310 18 C -0.036 4.036 19 C -0.280 4.280 20 C 0.277 3.723 21 C -0.483 4.483 22 H 0.083 0.917 23 C 0.050 3.950 24 N -0.806 5.806 25 Si 1.143 2.857 26 H -0.289 1.289 27 H -0.279 1.279 28 H -0.327 1.327 29 N -0.597 5.597 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.181 0.819 34 H 0.140 0.860 35 H 0.087 0.913 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.074 0.926 40 H 0.081 0.919 41 H 0.402 0.598 42 H 0.140 0.860 43 H 0.104 0.896 44 H 0.104 0.896 45 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.780 4.415 -17.864 22.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.151 5.151 3 N -0.120 5.120 4 C -0.138 4.138 5 C -0.280 4.280 6 C -0.044 4.044 7 C 0.117 3.883 8 H 0.103 0.897 9 C -0.161 4.161 10 C -0.165 4.165 11 C -0.031 4.031 12 N -0.366 5.366 13 C 0.432 3.568 14 O -0.425 6.425 15 N -0.310 5.310 16 C 0.169 3.831 17 C -0.335 4.335 18 C -0.060 4.060 19 C -0.303 4.303 20 C 0.153 3.847 21 C -0.515 4.515 22 H 0.102 0.898 23 C -0.172 4.172 24 N -0.428 5.428 25 Si 0.976 3.024 26 H -0.216 1.216 27 H -0.206 1.206 28 H -0.259 1.259 29 N -0.322 5.322 30 H 0.094 0.906 31 H 0.105 0.895 32 H 0.102 0.898 33 H 0.198 0.802 34 H 0.157 0.843 35 H 0.105 0.895 36 H 0.103 0.897 37 H 0.099 0.901 38 H 0.108 0.892 39 H 0.092 0.908 40 H 0.099 0.901 41 H 0.238 0.762 42 H 0.158 0.842 43 H 0.122 0.878 44 H 0.122 0.878 45 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -13.738 5.430 -19.128 24.168 hybrid contribution -0.383 -0.514 2.193 2.285 sum -14.121 4.915 -16.935 22.591 Atomic orbital electron populations 1.21813 0.74764 1.03844 1.03651 1.48313 1.06253 1.03213 1.57331 1.77309 1.01845 1.07671 1.25156 1.23776 0.95158 0.95070 0.99773 1.21072 0.96195 0.94817 1.15940 1.21140 0.91632 0.89987 1.01679 1.19699 0.92400 0.83700 0.92538 0.89669 1.22724 1.03050 0.96522 0.93783 1.22791 0.98658 0.96231 0.98842 1.22469 0.97272 0.92360 0.91044 1.47527 1.46109 1.35408 1.07590 1.15149 0.80196 0.81530 0.79970 1.90869 1.56305 1.35474 1.59860 1.42296 1.41871 1.39094 1.07723 1.17762 0.90397 0.93627 0.81275 1.21559 1.03958 1.14809 0.93197 1.20906 0.95529 0.95143 0.94422 1.21594 0.98899 1.10443 0.99352 1.18154 0.93065 0.88410 0.85085 1.20642 1.00189 1.34486 0.96156 0.89849 1.27636 0.90760 0.89782 1.09041 1.70617 1.31236 1.21339 1.19584 0.82144 0.71300 0.78077 0.70875 1.21636 1.20637 1.25947 1.66126 1.19339 1.30780 1.15927 0.90643 0.89479 0.89755 0.80188 0.84257 0.89487 0.89663 0.90068 0.89242 0.90774 0.90095 0.76245 0.84242 0.87786 0.87777 0.90487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.85 11.17 59.85 0.67 1.52 16 2 N -0.37 -4.78 4.01 -63.89 -0.26 -5.03 16 3 N -0.30 -4.44 12.57 30.63 0.39 -4.05 16 4 C 0.05 0.66 12.03 -17.36 -0.21 0.45 16 5 C -0.25 -3.56 10.10 -40.01 -0.40 -3.96 16 6 C 0.08 1.10 5.12 -82.26 -0.42 0.68 16 7 C 0.22 2.37 2.87 -68.10 -0.20 2.17 16 8 H 0.09 0.89 7.50 -51.93 -0.39 0.50 16 9 C -0.12 -0.79 6.46 -24.90 -0.16 -0.95 16 10 C -0.13 -0.73 7.10 -24.47 -0.17 -0.91 16 11 C 0.09 0.81 6.54 -2.41 -0.02 0.79 16 12 N -0.63 -7.94 2.73 -169.86 -0.46 -8.40 16 13 C 0.73 12.91 7.94 -86.92 -0.69 12.22 16 14 O -0.55 -11.62 12.95 5.30 0.07 -11.55 16 15 N -0.66 -12.70 5.36 -15.78 -0.08 -12.79 16 16 C 0.40 9.43 7.52 -154.99 -1.17 8.27 16 17 C -0.31 -7.26 8.84 -38.89 -0.34 -7.60 16 18 C -0.04 -0.81 10.15 -39.39 -0.40 -1.21 16 19 C -0.28 -6.86 9.83 -38.66 -0.38 -7.24 16 20 C 0.28 7.39 6.27 -85.00 -0.53 6.86 16 21 C -0.48 -13.26 9.51 -37.74 -0.36 -13.62 16 22 H 0.08 2.28 8.06 -52.48 -0.42 1.86 16 23 C 0.05 1.35 5.51 -17.34 -0.10 1.25 16 24 N -0.81 -21.91 13.65 55.55 0.76 -21.15 16 25 Si 1.14 27.69 25.94 -169.99 -4.41 23.29 16 26 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 27 H -0.28 -7.01 6.53 56.52 0.37 -6.64 16 28 H -0.33 -7.77 7.11 56.52 0.40 -7.36 16 29 N -0.60 -15.32 5.05 -10.26 -0.05 -15.37 16 30 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 32 H 0.08 0.47 7.39 -51.93 -0.38 0.08 16 33 H 0.18 1.98 8.06 -52.49 -0.42 1.55 16 34 H 0.14 1.94 8.06 -52.49 -0.42 1.52 16 35 H 0.09 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.08 0.58 7.84 -51.93 -0.41 0.17 16 37 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.09 0.36 8.14 -51.93 -0.42 -0.06 16 39 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.08 0.69 7.39 -51.93 -0.38 0.31 16 41 H 0.40 6.77 7.37 -40.82 -0.30 6.47 16 42 H 0.14 3.24 5.28 -52.56 -0.28 2.96 16 43 H 0.10 2.03 8.06 -52.49 -0.42 1.61 16 44 H 0.10 2.38 8.06 -52.49 -0.42 1.95 16 45 H 0.28 7.40 8.73 -40.82 -0.36 7.04 16 LS Contribution 370.59 15.07 5.58 5.58 Total: -1.00 -35.13 370.59 -9.32 -44.45 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -5.98 Total: 6.31 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: -4.88 Total: -1.29 kcal Atomic # 7 Polarization: -67.08 SS G_CDS: 0.29 Total: -66.79 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: 0.07 Total: -11.55 kcal Atomic # 14 Polarization: 27.69 SS G_CDS: -4.41 Total: 23.29 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.13 -9.32 -44.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932425178.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.393 kcal (2) G-P(sol) polarization free energy of solvation -35.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.267 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.450 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds