Wall clock time and date at job start Sat Apr 11 2020 06:22:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 N 1.40080 * 126.03977 * 2 1 4 4 C 1.30836 * 108.21004 * 179.97438 * 3 2 1 5 5 C 1.39876 * 108.19939 * 359.78344 * 4 3 2 6 6 C 1.34953 * 126.03751 * 179.97438 * 2 1 3 7 7 C 1.50704 * 126.12449 * 359.97438 * 6 2 1 8 8 H 1.09003 * 109.99710 * 333.43538 * 7 6 2 9 9 C 1.54327 * 109.88148 * 94.53486 * 7 6 2 10 10 C 1.55153 * 102.94048 * 141.60798 * 9 7 6 11 11 C 1.55125 * 101.48896 * 324.33275 * 10 9 7 12 12 N 1.47015 * 109.88132 * 212.34352 * 7 6 2 13 13 C 1.34779 * 125.65102 * 61.60329 * 12 7 6 14 14 O 1.21576 * 120.00063 * 0.02562 * 13 12 7 15 15 N 1.34776 * 120.00025 * 179.97438 * 13 12 7 16 16 C 1.39245 * 119.99797 * 186.01903 * 15 13 12 17 17 C 1.39684 * 119.58012 * 17.94115 * 16 15 13 18 18 C 1.38638 * 119.50129 * 179.97438 * 17 16 15 19 19 C 1.38360 * 118.66983 * 359.72775 * 18 17 16 20 20 C 1.40575 * 119.13063 * 0.55432 * 19 18 17 21 21 C 1.41323 * 119.78835 * 179.70602 * 20 19 18 22 22 H 1.08003 * 120.00011 * 8.76875 * 21 20 19 23 23 C 1.40028 * 120.00035 * 188.76501 * 21 20 19 24 24 N 1.30749 * 120.00239 * 195.66441 * 23 21 20 25 25 Si 1.86799 * 120.00031 * 15.66792 * 23 21 20 26 26 H 1.48504 * 109.47162 * 269.99754 * 25 23 21 27 27 H 1.48504 * 109.47305 * 29.99769 * 25 23 21 28 28 H 1.48496 * 109.47305 * 149.99848 * 25 23 21 29 29 N 1.31909 * 119.57773 * 197.95813 * 16 15 13 30 30 H 1.08999 * 109.46691 * 274.22721 * 1 2 3 31 31 H 1.09000 * 109.47374 * 34.22548 * 1 2 3 32 32 H 1.08996 * 109.47532 * 154.22755 * 1 2 3 33 33 H 1.08000 * 125.90463 * 180.02562 * 4 3 2 34 34 H 1.07997 * 126.04201 * 180.23459 * 5 4 3 35 35 H 1.09001 * 110.71762 * 259.97434 * 9 7 6 36 36 H 1.08999 * 110.72140 * 23.24581 * 9 7 6 37 37 H 1.09007 * 111.00478 * 82.57549 * 10 9 7 38 38 H 1.08997 * 111.00180 * 206.41793 * 10 9 7 39 39 H 1.08998 * 110.50052 * 278.45669 * 11 10 9 40 40 H 1.09002 * 110.34602 * 156.05894 * 11 10 9 41 41 H 0.96998 * 119.99929 * 6.02772 * 15 13 12 42 42 H 1.08002 * 120.24881 * 359.97438 * 17 16 15 43 43 H 1.07998 * 120.66932 * 179.97438 * 18 17 16 44 44 H 1.07994 * 120.43272 * 180.26436 * 19 18 17 45 45 H 0.97000 * 119.99884 * 354.93117 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2891 1.1327 0.0000 4 6 3.5346 0.7321 0.0006 5 6 3.5437 -0.6666 0.0059 6 6 2.2589 -1.0913 0.0005 7 6 1.7973 -2.5259 0.0017 8 1 0.8111 -2.5997 0.4602 9 6 1.7452 -3.0616 -1.4447 10 6 2.2531 -4.5199 -1.2935 11 6 3.3217 -4.3611 -0.1803 12 7 2.7563 -3.3591 0.7416 13 6 3.0709 -3.2253 2.0453 14 8 2.5435 -2.3560 2.7118 15 7 3.9694 -4.0559 2.6103 16 6 4.2020 -4.0007 3.9821 17 6 3.2695 -3.3780 4.8151 18 6 3.5026 -3.3244 6.1807 19 6 4.6579 -3.8991 6.6800 20 6 5.5605 -4.5059 5.7894 21 6 6.7479 -5.0916 6.2836 22 1 6.8944 -5.1992 7.3482 23 6 7.7345 -5.5324 5.3930 24 7 8.6774 -6.3374 5.8081 25 14 7.7035 -4.9703 3.6119 26 1 6.9006 -5.9245 2.8056 27 1 7.0945 -3.6183 3.5300 28 1 9.0906 -4.9211 3.0841 29 7 5.3003 -4.5369 4.4783 30 1 -0.3633 0.0758 1.0249 31 1 -0.3634 0.8497 -0.5780 32 1 -0.3634 -0.9254 -0.4468 33 1 4.4054 1.3709 0.0011 34 1 4.4210 -1.2964 0.0113 35 1 0.7238 -3.0464 -1.8250 36 1 2.4077 -2.4878 -2.0926 37 1 1.4483 -5.1829 -0.9755 38 1 2.7057 -4.8739 -2.2197 39 1 4.2608 -4.0020 -0.6012 40 1 3.4743 -5.3086 0.3365 41 1 4.4540 -4.6921 2.0614 42 1 2.3738 -2.9415 4.3985 43 1 2.7945 -2.8473 6.8421 44 1 4.8658 -3.8775 7.7395 45 1 8.7370 -6.5708 6.7477 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932425178.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:40 Heat of formation + Delta-G solvation = 75.009228 kcal Electronic energy + Delta-G solvation = -30012.092445 eV Core-core repulsion = 26030.725496 eV Total energy + Delta-G solvation = -3981.366949 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.52610 -41.68600 -40.25896 -38.66173 -36.25782 -35.40894 -34.27866 -32.95507 -32.87325 -32.18914 -30.87786 -28.84701 -27.59419 -27.27931 -25.34197 -23.73697 -23.33785 -22.49055 -22.09371 -21.45397 -20.72260 -20.03132 -19.32283 -18.34080 -18.08887 -17.28583 -16.84065 -16.49326 -16.35530 -16.29580 -15.91564 -15.48899 -15.25938 -14.97107 -14.76285 -14.48647 -14.44890 -14.17968 -14.02424 -13.94551 -13.73842 -13.57391 -13.27021 -13.20661 -12.99061 -12.75060 -12.58519 -12.21858 -12.13053 -11.85801 -11.74102 -11.64231 -11.58029 -11.06327 -10.96287 -10.39474 -10.27003 -9.93425 -9.81012 -9.47091 -9.31447 -9.13768 -6.78756 0.59085 0.77815 0.79237 1.23484 1.51061 1.65017 1.67222 1.84813 1.97240 2.01173 2.40589 2.64882 2.73876 3.38468 3.54063 3.59014 3.67755 3.73318 4.00427 4.07592 4.17101 4.30955 4.38409 4.38667 4.49491 4.60950 4.62327 4.63558 4.69010 4.70504 4.78378 4.80337 4.88744 4.92315 5.04445 5.15072 5.20447 5.34999 5.37456 5.42334 5.44811 5.65796 5.67185 5.80310 5.91445 6.03583 6.08286 6.41800 6.58450 6.69931 6.74168 7.33645 7.54159 7.93938 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.014472 B = 0.003510 C = 0.003288 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.301935 B = 7974.898707 C = 8513.589339 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -0.371 5.371 3 N -0.329 5.329 4 C 0.036 3.964 5 C -0.279 4.279 6 C 0.087 3.913 7 C 0.216 3.784 8 H 0.091 0.909 9 C -0.110 4.110 10 C -0.113 4.113 11 C 0.077 3.923 12 N -0.618 5.618 13 C 0.728 3.272 14 O -0.589 6.589 15 N -0.660 5.660 16 C 0.395 3.605 17 C -0.310 4.310 18 C -0.030 4.030 19 C -0.297 4.297 20 C 0.261 3.739 21 C -0.512 4.512 22 H 0.069 0.931 23 C 0.023 3.977 24 N -0.825 5.825 25 Si 1.174 2.826 26 H -0.270 1.270 27 H -0.295 1.295 28 H -0.320 1.320 29 N -0.608 5.608 30 H 0.070 0.930 31 H 0.100 0.900 32 H 0.118 0.882 33 H 0.198 0.802 34 H 0.134 0.866 35 H 0.118 0.882 36 H 0.084 0.916 37 H 0.091 0.909 38 H 0.116 0.884 39 H 0.082 0.918 40 H 0.084 0.916 41 H 0.413 0.587 42 H 0.146 0.854 43 H 0.139 0.861 44 H 0.114 0.886 45 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.085 4.050 -20.671 26.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.051 4.051 2 N -0.154 5.154 3 N -0.152 5.152 4 C -0.148 4.148 5 C -0.308 4.308 6 C -0.043 4.043 7 C 0.110 3.890 8 H 0.109 0.891 9 C -0.149 4.149 10 C -0.151 4.151 11 C -0.045 4.045 12 N -0.355 5.355 13 C 0.430 3.570 14 O -0.467 6.467 15 N -0.308 5.308 16 C 0.162 3.838 17 C -0.334 4.334 18 C -0.054 4.054 19 C -0.319 4.319 20 C 0.136 3.864 21 C -0.545 4.545 22 H 0.087 0.913 23 C -0.195 4.195 24 N -0.448 5.448 25 Si 1.004 2.996 26 H -0.196 1.196 27 H -0.224 1.224 28 H -0.252 1.252 29 N -0.333 5.333 30 H 0.089 0.911 31 H 0.119 0.881 32 H 0.136 0.864 33 H 0.215 0.785 34 H 0.152 0.848 35 H 0.136 0.864 36 H 0.103 0.897 37 H 0.110 0.890 38 H 0.134 0.866 39 H 0.100 0.900 40 H 0.102 0.898 41 H 0.250 0.750 42 H 0.163 0.837 43 H 0.157 0.843 44 H 0.132 0.868 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -16.070 5.040 -22.006 27.711 hybrid contribution 0.137 -0.301 3.019 3.037 sum -15.933 4.739 -18.987 25.235 Atomic orbital electron populations 1.22188 0.72464 1.06362 1.04036 1.48669 1.07636 1.02659 1.56440 1.77237 1.02415 1.09114 1.26392 1.24148 0.95673 0.95528 0.99479 1.21199 0.96820 0.95043 1.17787 1.21508 0.91427 0.91126 1.00229 1.20137 0.91721 0.82200 0.94919 0.89097 1.22763 1.05066 0.96488 0.90558 1.22806 0.97839 0.95869 0.98544 1.22861 0.98814 0.91404 0.91382 1.47551 1.45727 1.36035 1.06198 1.15275 0.79584 0.80731 0.81444 1.90820 1.57482 1.36865 1.61545 1.42221 1.42515 1.39762 1.06280 1.18051 0.89708 0.92824 0.83236 1.21863 1.04017 1.13924 0.93629 1.21286 0.95336 0.93997 0.94793 1.21755 0.99398 1.10961 0.99769 1.18344 0.93273 0.88657 0.86128 1.20646 1.01454 1.36710 0.95684 0.91272 1.28401 0.90458 0.89529 1.11102 1.70636 1.31989 1.22544 1.19599 0.81734 0.71653 0.77223 0.68964 1.19601 1.22365 1.25213 1.66122 1.20251 1.31315 1.15630 0.91122 0.88093 0.86395 0.78528 0.84775 0.86372 0.89714 0.89040 0.86590 0.89998 0.89756 0.75010 0.83665 0.84292 0.86813 0.90705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.31 11.17 127.77 1.43 2.74 16 2 N -0.37 -9.10 4.01 -356.04 -1.43 -10.52 16 3 N -0.33 -9.65 12.57 -57.02 -0.72 -10.37 16 4 C 0.04 1.00 12.03 85.24 1.03 2.03 16 5 C -0.28 -7.77 10.10 21.99 0.22 -7.54 16 6 C 0.09 2.13 5.12 41.40 0.21 2.34 16 7 C 0.22 3.95 2.87 44.60 0.13 4.08 16 8 H 0.09 1.60 7.50 -2.39 -0.02 1.58 16 9 C -0.11 -0.95 6.46 31.78 0.21 -0.74 16 10 C -0.11 -0.77 7.10 32.06 0.23 -0.54 16 11 C 0.08 1.11 6.54 86.93 0.57 1.68 16 12 N -0.62 -14.23 2.73 -809.60 -2.21 -16.44 16 13 C 0.73 24.77 7.94 179.05 1.42 26.19 16 14 O -0.59 -24.36 12.95 -3.96 -0.05 -24.41 16 15 N -0.66 -24.49 5.36 -322.12 -1.73 -26.22 16 16 C 0.39 18.25 7.52 133.26 1.00 19.25 16 17 C -0.31 -14.13 8.84 22.72 0.20 -13.93 16 18 C -0.03 -1.32 10.15 22.39 0.23 -1.09 16 19 C -0.30 -14.46 9.83 22.87 0.22 -14.23 16 20 C 0.26 14.06 6.27 40.19 0.25 14.32 16 21 C -0.51 -28.92 9.51 23.46 0.22 -28.70 16 22 H 0.07 3.96 8.06 -2.91 -0.02 3.94 16 23 C 0.02 1.26 5.51 85.29 0.47 1.73 16 24 N -0.82 -45.67 13.65 21.84 0.30 -45.37 16 25 Si 1.17 56.18 25.94 68.60 1.78 57.96 16 26 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 27 H -0.30 -14.82 6.53 99.48 0.65 -14.17 16 28 H -0.32 -14.78 7.11 99.48 0.71 -14.08 16 29 N -0.61 -31.06 5.05 -186.37 -0.94 -32.00 16 30 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 31 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.12 0.87 7.39 -2.39 -0.02 0.86 16 33 H 0.20 4.35 8.06 -2.91 -0.02 4.32 16 34 H 0.13 3.73 8.06 -2.91 -0.02 3.71 16 35 H 0.12 0.37 8.14 -2.39 -0.02 0.35 16 36 H 0.08 0.81 7.84 -2.39 -0.02 0.79 16 37 H 0.09 0.52 8.14 -2.38 -0.02 0.50 16 38 H 0.12 0.30 8.14 -2.39 -0.02 0.28 16 39 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 40 H 0.08 1.19 7.39 -2.39 -0.02 1.17 16 41 H 0.41 13.26 7.37 -92.71 -0.68 12.58 16 42 H 0.15 6.56 5.28 -4.12 -0.02 6.54 16 43 H 0.14 5.06 8.06 -2.91 -0.02 5.04 16 44 H 0.11 5.20 8.06 -2.91 -0.02 5.18 16 45 H 0.28 15.16 8.73 -92.71 -0.81 14.35 16 Total: -1.00 -77.98 370.59 3.28 -74.70 By element: Atomic # 1 Polarization: 24.85 SS G_CDS: 0.24 Total: 25.09 kcal Atomic # 6 Polarization: -0.46 SS G_CDS: 8.04 Total: 7.58 kcal Atomic # 7 Polarization: -134.20 SS G_CDS: -6.73 Total: -140.92 kcal Atomic # 8 Polarization: -24.36 SS G_CDS: -0.05 Total: -24.41 kcal Atomic # 14 Polarization: 56.18 SS G_CDS: 1.78 Total: 57.96 kcal Total: -77.98 3.28 -74.70 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932425178.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 149.706 kcal (2) G-P(sol) polarization free energy of solvation -77.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds