Wall clock time and date at job start Sat Apr 11 2020 06:22:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34810 * 126.59736 * 2 1 4 4 C 1.36599 * 106.83840 * 179.76267 * 3 2 1 5 5 C 1.47523 * 125.76842 * 180.22146 * 4 3 2 6 6 O 1.21594 * 120.00186 * 359.97438 * 5 4 3 7 7 N 1.34777 * 119.99569 * 179.97438 * 5 4 3 8 8 C 1.46499 * 119.99681 * 179.97438 * 7 5 4 9 9 C 1.53003 * 109.47064 * 180.02562 * 8 7 5 10 10 H 1.08998 * 109.43416 * 65.00088 * 9 8 7 11 11 C 1.50807 * 109.43670 * 184.91727 * 9 8 7 12 12 C 1.38927 * 117.74314 * 289.10220 * 11 9 8 13 13 C 1.37958 * 120.49211 * 179.57872 * 12 11 9 14 14 C 1.38268 * 119.71553 * 359.97438 * 13 12 11 15 15 C 1.37903 * 119.82517 * 0.21655 * 14 13 12 16 16 C 1.37597 * 122.41742 * 109.03595 * 11 9 8 17 17 C 1.50599 * 122.84599 * 0.69587 * 16 11 9 18 18 C 1.52792 * 110.85740 * 340.30220 * 17 16 11 19 19 N 1.46684 * 109.43683 * 305.08176 * 9 8 7 20 20 C 1.36930 * 121.35120 * 104.26087 * 19 9 8 21 21 H 1.08004 * 120.00058 * 333.23234 * 20 19 9 22 22 C 1.38810 * 120.00319 * 153.23691 * 20 19 9 23 23 N 1.31617 * 120.00087 * 341.50551 * 22 20 19 24 24 Si 1.86799 * 120.00260 * 161.51296 * 22 20 19 25 25 H 1.48503 * 109.47332 * 59.99488 * 24 22 20 26 26 H 1.48498 * 109.47414 * 179.97438 * 24 22 20 27 27 H 1.48506 * 109.46935 * 299.99760 * 24 22 20 28 28 N 1.34404 * 108.45649 * 0.23823 * 4 3 2 29 29 N 1.28756 * 109.52331 * 359.97438 * 28 4 3 30 30 H 1.09000 * 109.47313 * 89.99877 * 1 2 3 31 31 H 1.08997 * 109.47461 * 210.00309 * 1 2 3 32 32 H 1.09003 * 109.46788 * 330.00372 * 1 2 3 33 33 H 1.08003 * 126.58088 * 0.02562 * 3 2 1 34 34 H 0.97001 * 120.00198 * 359.97438 * 7 5 4 35 35 H 1.09004 * 109.47513 * 299.99903 * 8 7 5 36 36 H 1.09005 * 109.47395 * 59.99877 * 8 7 5 37 37 H 1.08004 * 119.76539 * 359.56292 * 12 11 9 38 38 H 1.07995 * 120.14062 * 180.02562 * 13 12 11 39 39 H 1.07995 * 120.08681 * 180.20143 * 14 13 12 40 40 H 1.07999 * 119.70609 * 179.97438 * 15 14 13 41 41 H 1.08997 * 109.19736 * 219.94685 * 17 16 11 42 42 H 1.08997 * 109.16117 * 100.63320 * 17 16 11 43 43 H 1.09006 * 109.77604 * 287.84651 * 18 17 16 44 44 H 1.08990 * 109.82218 * 167.06428 * 18 17 16 45 45 H 0.96992 * 120.00492 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2687 1.0823 0.0000 4 6 3.5543 0.6205 0.0054 5 6 4.7704 1.4555 0.0120 6 8 4.6756 2.6678 0.0125 7 7 5.9866 0.8746 0.0175 8 6 7.1943 1.7038 0.0235 9 6 8.4312 0.8032 0.0283 10 1 8.4729 0.2393 -0.9035 11 6 9.6703 1.6532 0.1564 12 6 10.0372 2.4303 -0.9353 13 6 11.1557 3.2358 -0.8769 14 6 11.9164 3.2697 0.2772 15 6 11.5551 2.4956 1.3598 16 6 10.4311 1.6802 1.3026 17 6 10.1040 0.8557 2.5196 18 6 8.6424 0.4110 2.4987 19 7 8.3529 -0.1276 1.1592 20 6 8.0242 -1.4443 0.9767 21 1 7.4173 -1.7374 0.1328 22 6 8.4709 -2.4024 1.8763 23 7 9.4818 -2.1342 2.6754 24 14 7.6376 -4.0724 1.9528 25 1 7.7478 -4.7417 0.6318 26 1 8.2980 -4.9084 2.9873 27 1 6.2045 -3.8951 2.2998 28 7 3.5237 -0.7232 0.0033 29 7 2.3008 -1.1258 -0.0025 30 1 -0.3634 0.0000 -1.0277 31 1 -0.3634 -0.8899 0.5139 32 1 -0.3633 0.8901 0.5138 33 1 1.9562 2.1161 0.0004 34 1 6.0622 -0.0924 0.0175 35 1 7.2073 2.3335 -0.8662 36 1 7.1989 2.3328 0.9138 37 1 9.4426 2.4036 -1.8365 38 1 11.4354 3.8378 -1.7287 39 1 12.7913 3.9005 0.3306 40 1 12.1509 2.5233 2.2602 41 1 10.2849 1.4507 3.4148 42 1 10.7464 -0.0246 2.5385 43 1 7.9945 1.2638 2.7013 44 1 8.4805 -0.3619 3.2499 45 1 9.7942 -2.8037 3.3037 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000948912801.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:22:44 Heat of formation + Delta-G solvation = 115.351996 kcal Electronic energy + Delta-G solvation = -29718.157517 eV Core-core repulsion = 25738.539962 eV Total energy + Delta-G solvation = -3979.617555 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 341.159 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.11948 -39.54070 -38.70384 -36.23089 -34.72490 -34.05750 -32.25691 -31.95973 -30.88848 -29.82135 -28.70132 -28.01999 -26.78464 -24.45411 -23.08807 -22.50783 -22.19457 -21.89360 -21.14860 -20.07462 -18.67979 -17.95322 -16.72696 -16.26756 -16.02318 -15.88650 -15.42753 -15.32241 -14.68765 -14.54498 -14.44260 -14.13559 -13.92000 -13.75367 -13.38542 -13.33566 -13.14827 -12.60080 -12.52640 -12.32163 -12.14480 -12.08271 -11.64642 -11.22386 -11.13188 -11.05555 -11.03302 -10.73495 -10.63739 -10.41539 -10.38520 -10.04680 -9.83840 -9.75406 -9.47483 -9.25898 -8.51937 -8.45415 -8.20906 -7.87712 -6.76577 -5.84265 -3.27621 1.14450 1.89346 1.91067 1.98221 2.01208 3.41780 3.46288 3.51834 3.56917 3.64677 4.25844 4.30986 4.34579 4.46579 4.69287 4.82596 4.96724 5.06848 5.29919 5.31003 5.34850 5.41722 5.47006 5.49708 5.62107 5.80824 5.90750 5.94715 6.01799 6.13936 6.27195 6.27989 6.41842 6.48677 6.59429 6.64579 6.76263 6.81391 6.95573 7.00217 7.06767 7.39480 7.42757 7.59985 7.66528 7.77429 7.89997 8.18218 8.35660 8.63422 9.13034 9.74961 10.32787 11.23088 Molecular weight = 341.16amu Principal moments of inertia in cm(-1) A = 0.009790 B = 0.004120 C = 0.003072 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2859.483832 B = 6793.942819 C = 9111.019001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.370 5.370 3 C 0.086 3.914 4 C -0.093 4.093 5 C 0.597 3.403 6 O -0.558 6.558 7 N -0.687 5.687 8 C 0.113 3.887 9 C 0.192 3.808 10 H 0.078 0.922 11 C -0.079 4.079 12 C -0.119 4.119 13 C -0.140 4.140 14 C -0.128 4.128 15 C -0.134 4.134 16 C -0.039 4.039 17 C -0.096 4.096 18 C 0.165 3.835 19 N -0.579 5.579 20 C -0.256 4.256 21 H 0.069 0.931 22 C 0.012 3.988 23 N -0.894 5.894 24 Si 0.901 3.099 25 H -0.282 1.282 26 H -0.292 1.292 27 H -0.280 1.280 28 N -0.192 5.192 29 N -0.069 5.069 30 H 0.087 0.913 31 H 0.099 0.901 32 H 0.096 0.904 33 H 0.203 0.797 34 H 0.419 0.581 35 H 0.060 0.940 36 H 0.063 0.937 37 H 0.115 0.885 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.113 0.887 41 H 0.048 0.952 42 H 0.102 0.898 43 H 0.006 0.994 44 H 0.095 0.905 45 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.691 8.699 -4.670 14.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.155 5.155 3 C -0.071 4.071 4 C -0.232 4.232 5 C 0.380 3.620 6 O -0.437 6.437 7 N -0.337 5.337 8 C -0.013 4.013 9 C 0.084 3.916 10 H 0.096 0.904 11 C -0.081 4.081 12 C -0.137 4.137 13 C -0.158 4.158 14 C -0.147 4.147 15 C -0.152 4.152 16 C -0.039 4.039 17 C -0.135 4.135 18 C 0.040 3.960 19 N -0.299 5.299 20 C -0.385 4.385 21 H 0.087 0.913 22 C -0.187 4.187 23 N -0.537 5.537 24 Si 0.730 3.270 25 H -0.208 1.208 26 H -0.218 1.218 27 H -0.206 1.206 28 N -0.066 5.066 29 N -0.049 5.049 30 H 0.106 0.894 31 H 0.118 0.882 32 H 0.114 0.886 33 H 0.220 0.780 34 H 0.258 0.742 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.133 0.867 38 H 0.130 0.870 39 H 0.129 0.871 40 H 0.131 0.869 41 H 0.066 0.934 42 H 0.120 0.880 43 H 0.024 0.976 44 H 0.113 0.887 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -10.650 7.835 -4.526 13.975 hybrid contribution -0.372 -0.214 0.085 0.438 sum -11.022 7.621 -4.441 14.117 Atomic orbital electron populations 1.22133 0.72914 1.05599 1.04513 1.50395 1.08970 1.05891 1.50265 1.23314 0.90247 0.94818 0.98730 1.21627 0.94768 0.90409 1.16400 1.16761 0.82029 0.86171 0.77051 1.90756 1.86929 1.13126 1.52856 1.45771 1.04311 1.12358 1.71271 1.21974 0.84538 0.93673 1.01095 1.19615 0.88235 0.89933 0.93858 0.90389 1.20084 0.97609 0.97115 0.93259 1.21126 0.97287 0.97081 0.98222 1.20873 0.96460 1.00577 0.97877 1.20906 0.99703 1.00095 0.93955 1.21190 0.97490 0.97994 0.98566 1.19856 0.93334 0.94754 0.95949 1.20999 1.02159 0.98448 0.91855 1.20794 0.90449 0.95988 0.88807 1.44126 1.80292 1.05465 1.00029 1.19015 1.25653 0.82128 1.11699 0.91297 1.24955 0.96015 0.97564 1.00208 1.69958 1.23980 1.34569 1.25165 0.86399 0.79513 0.83671 0.77415 1.20831 1.21832 1.20626 1.74752 1.12416 1.10342 1.09100 1.82044 0.93615 1.06325 1.22960 0.89432 0.88214 0.88590 0.78001 0.74182 0.92159 0.91870 0.86731 0.86995 0.87109 0.86930 0.93395 0.88033 0.97591 0.88716 0.93537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.45 11.51 59.85 0.69 1.14 16 2 N -0.37 -4.08 4.03 -67.85 -0.27 -4.35 16 3 C 0.09 1.02 11.31 -16.84 -0.19 0.83 16 4 C -0.09 -1.50 6.99 -83.55 -0.58 -2.08 16 5 C 0.60 10.87 7.82 -12.48 -0.10 10.77 16 6 O -0.56 -10.91 16.86 5.28 0.09 -10.82 16 7 N -0.69 -12.97 5.38 -61.35 -0.33 -13.30 16 8 C 0.11 2.11 5.01 -4.04 -0.02 2.09 16 9 C 0.19 3.86 2.50 -68.93 -0.17 3.69 16 10 H 0.08 1.58 7.98 -51.93 -0.41 1.17 16 11 C -0.08 -1.52 5.17 -104.55 -0.54 -2.06 16 12 C -0.12 -1.97 9.34 -39.43 -0.37 -2.34 16 13 C -0.14 -2.12 10.05 -39.67 -0.40 -2.52 16 14 C -0.13 -1.97 10.04 -39.69 -0.40 -2.37 16 15 C -0.13 -2.31 9.59 -39.43 -0.38 -2.69 16 16 C -0.04 -0.76 5.76 -104.63 -0.60 -1.37 16 17 C -0.10 -2.03 5.77 -28.04 -0.16 -2.19 16 18 C 0.16 3.77 5.46 -3.74 -0.02 3.75 16 19 N -0.58 -13.37 2.30 -166.31 -0.38 -13.75 16 20 C -0.26 -6.49 8.72 -15.06 -0.13 -6.62 16 21 H 0.07 1.72 7.29 -52.48 -0.38 1.34 16 22 C 0.01 0.32 4.93 -17.43 -0.09 0.24 16 23 N -0.89 -24.05 10.13 55.49 0.56 -23.49 16 24 Si 0.90 21.30 29.59 -169.99 -5.03 16.27 16 25 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 26 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 27 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 28 N -0.19 -3.41 12.04 32.85 0.40 -3.01 16 29 N -0.07 -1.07 13.78 60.35 0.83 -0.24 16 30 H 0.09 0.30 8.14 -51.93 -0.42 -0.13 16 31 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.10 0.23 8.14 -51.93 -0.42 -0.20 16 33 H 0.20 1.67 8.06 -52.48 -0.42 1.25 16 34 H 0.42 8.40 6.37 -40.82 -0.26 8.14 16 35 H 0.06 1.04 8.03 -51.93 -0.42 0.62 16 36 H 0.06 1.26 7.54 -51.93 -0.39 0.87 16 37 H 0.11 1.67 8.05 -52.48 -0.42 1.25 16 38 H 0.11 1.39 8.06 -52.49 -0.42 0.96 16 39 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 40 H 0.11 1.74 8.05 -52.49 -0.42 1.31 16 41 H 0.05 0.91 8.11 -51.93 -0.42 0.49 16 42 H 0.10 2.43 7.11 -51.93 -0.37 2.07 16 43 H 0.01 0.14 7.48 -51.93 -0.39 -0.25 16 44 H 0.09 2.41 5.95 -51.93 -0.31 2.10 16 45 H 0.25 6.76 8.31 -40.82 -0.34 6.42 16 LS Contribution 374.30 15.07 5.64 5.64 Total: -1.00 -31.76 374.30 -7.83 -39.59 By element: Atomic # 1 Polarization: 15.08 SS G_CDS: -5.87 Total: 9.21 kcal Atomic # 6 Polarization: 1.72 SS G_CDS: -3.46 Total: -1.74 kcal Atomic # 7 Polarization: -58.95 SS G_CDS: 0.80 Total: -58.15 kcal Atomic # 8 Polarization: -10.91 SS G_CDS: 0.09 Total: -10.82 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.03 Total: 16.27 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -31.76 -7.83 -39.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000948912801.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.942 kcal (2) G-P(sol) polarization free energy of solvation -31.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 115.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds